Wall clock time and date at job start Tue Mar 31 2020 01:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40084 * 126.03871 * 2 1 4 4 C 1.30839 * 108.20436 * 180.02562 * 3 2 1 5 5 C 1.39871 * 108.20318 * 359.78457 * 4 3 2 6 6 C 1.34943 * 126.03548 * 180.02562 * 2 1 3 7 7 C 1.50710 * 126.12788 * 359.94470 * 6 2 1 8 8 H 1.09006 * 109.48592 * 25.02517 * 7 6 2 9 9 C 1.53088 * 109.47911 * 265.00146 * 7 6 2 10 10 C 1.53174 * 109.16555 * 182.40872 * 9 7 6 11 11 H 1.09009 * 109.53884 * 297.02379 * 10 9 7 12 12 N 1.46492 * 109.54573 * 176.84441 * 10 9 7 13 13 C 1.34784 * 120.00032 * 155.17563 * 12 10 9 14 14 O 1.21682 * 119.99709 * 359.97438 * 13 12 10 15 15 C 1.46375 * 120.00017 * 179.97438 * 13 12 10 16 16 H 1.07997 * 120.00017 * 6.06241 * 15 13 12 17 17 C 1.40048 * 119.99791 * 186.05788 * 15 13 12 18 18 N 1.30667 * 120.00227 * 353.85499 * 17 15 13 19 19 Si 1.86801 * 119.99713 * 173.85184 * 17 15 13 20 20 H 1.48499 * 109.47082 * 275.01119 * 19 17 15 21 21 H 1.48502 * 109.47315 * 35.01165 * 19 17 15 22 22 H 1.48498 * 109.46972 * 155.01320 * 19 17 15 23 23 C 1.53179 * 109.10835 * 56.93125 * 10 9 7 24 24 C 1.53108 * 109.15744 * 303.15484 * 23 10 9 25 25 O 1.42895 * 109.47996 * 145.05337 * 7 6 2 26 26 H 1.08997 * 109.46927 * 269.97477 * 1 2 3 27 27 H 1.09009 * 109.46926 * 29.97101 * 1 2 3 28 28 H 1.08994 * 109.47350 * 149.96751 * 1 2 3 29 29 H 1.07995 * 125.89599 * 180.02562 * 4 3 2 30 30 H 1.07998 * 126.04199 * 180.22541 * 5 4 3 31 31 H 1.09005 * 109.52681 * 62.49607 * 9 7 6 32 32 H 1.09010 * 109.57079 * 302.34543 * 9 7 6 33 33 H 0.96998 * 120.00262 * 335.17885 * 12 10 9 34 34 H 0.97002 * 120.00373 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.52063 * 62.97307 * 23 10 9 36 36 H 1.09000 * 109.52256 * 183.16425 * 23 10 9 37 37 H 1.09004 * 109.40786 * 297.49578 * 24 23 10 38 38 H 1.08998 * 109.48923 * 177.51006 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 3.5437 -0.6666 0.0041 6 6 2.2589 -1.0912 -0.0005 7 6 1.7972 -2.5259 0.0000 8 1 0.7991 -2.5869 -0.4339 9 6 1.7617 -3.0502 1.4379 10 6 1.3499 -4.5255 1.4252 11 1 0.3405 -4.6188 1.0242 12 7 1.3861 -5.0562 2.7901 13 6 0.6229 -6.1167 3.1213 14 8 -0.0964 -6.6329 2.2866 15 6 0.6595 -6.6473 4.4850 16 1 1.2210 -6.1319 5.2501 17 6 -0.0337 -7.8234 4.7975 18 7 -0.8092 -8.3812 3.9060 19 14 0.1504 -8.5946 6.4889 20 1 1.3521 -9.4667 6.5071 21 1 0.3000 -7.5242 7.5074 22 1 -1.0547 -9.4058 6.7968 23 6 2.3260 -5.3110 0.5439 24 6 2.3412 -4.6979 -0.8590 25 8 2.7018 -3.3178 -0.7722 26 1 -0.3633 -0.0005 1.0276 27 1 -0.3633 0.8903 -0.5134 28 1 -0.3634 -0.8896 -0.5143 29 1 4.4054 1.3709 -0.0003 30 1 4.4210 -1.2964 0.0083 31 1 1.0394 -2.4753 2.0176 32 1 2.7501 -2.9517 1.8870 33 1 1.9592 -4.6444 3.4556 34 1 -1.2891 -9.1960 4.1223 35 1 3.3265 -5.2597 0.9733 36 1 2.0068 -6.3515 0.4847 37 1 1.3502 -4.7873 -1.3041 38 1 3.0669 -5.2250 -1.4783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640836530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:14 Heat of formation + Delta-G solvation = -34.666664 kcal Electronic energy + Delta-G solvation = -21800.270020 eV Core-core repulsion = 18450.296597 eV Total energy + Delta-G solvation = -3349.973423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33064 -40.59841 -39.01915 -35.84345 -34.55163 -34.38483 -33.24425 -32.19179 -30.04892 -28.39716 -27.62505 -25.52787 -24.75341 -22.38792 -21.92669 -21.22844 -20.68829 -19.21892 -18.13644 -17.48964 -17.11324 -16.84671 -16.42670 -16.20087 -15.92077 -15.65775 -15.32926 -14.67406 -14.57937 -14.49198 -14.32634 -14.01667 -13.61383 -13.40673 -13.23587 -13.10140 -12.82110 -12.61193 -12.50584 -12.35423 -12.04096 -11.99095 -11.69512 -11.47794 -10.92424 -10.86902 -10.28774 -9.82477 -9.50672 -9.46497 -8.30060 -6.85163 0.78152 1.40291 1.41549 1.47613 1.55757 1.87268 2.24151 2.47126 2.68656 2.99653 3.43878 3.58284 3.71127 3.76733 3.89205 3.94241 4.10890 4.18146 4.32957 4.35432 4.41101 4.46889 4.61800 4.67448 4.74907 4.78581 4.80564 4.98746 5.08069 5.22240 5.26724 5.32414 5.73887 5.88373 5.93921 6.11557 6.22239 6.28643 6.70909 6.87309 7.53993 8.49127 8.66928 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028664 B = 0.003769 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.614265 B = 7428.197415 C = 7736.276504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.374 5.374 3 N -0.323 5.323 4 C 0.043 3.957 5 C -0.256 4.256 6 C 0.079 3.921 7 C 0.168 3.832 8 H 0.077 0.923 9 C -0.130 4.130 10 C 0.156 3.844 11 H 0.049 0.951 12 N -0.750 5.750 13 C 0.542 3.458 14 O -0.628 6.628 15 C -0.577 4.577 16 H 0.085 0.915 17 C 0.032 3.968 18 N -0.820 5.820 19 Si 0.994 3.006 20 H -0.262 1.262 21 H -0.251 1.251 22 H -0.274 1.274 23 C -0.159 4.159 24 C 0.074 3.926 25 O -0.372 6.372 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.214 0.786 30 H 0.157 0.843 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.393 0.607 34 H 0.274 0.726 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 13.682 -6.487 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.158 5.158 3 N -0.145 5.145 4 C -0.142 4.142 5 C -0.285 4.285 6 C -0.049 4.049 7 C 0.108 3.892 8 H 0.095 0.905 9 C -0.169 4.169 10 C 0.050 3.950 11 H 0.068 0.932 12 N -0.403 5.403 13 C 0.346 3.654 14 O -0.515 6.515 15 C -0.613 4.613 16 H 0.103 0.897 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.814 3.186 20 H -0.186 1.186 21 H -0.174 1.174 22 H -0.199 1.199 23 C -0.198 4.198 24 C -0.003 4.003 25 O -0.291 6.291 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.231 0.769 30 H 0.175 0.825 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.227 0.773 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.524 14.281 -7.242 16.938 hybrid contribution 0.344 -1.272 1.035 1.676 sum 5.869 13.008 -6.207 15.562 Atomic orbital electron populations 1.22188 0.72850 1.05791 1.04618 1.48686 1.07521 1.02625 1.56991 1.77319 1.02820 1.08318 1.26004 1.24386 0.95627 0.95311 0.98853 1.21482 0.96678 0.95189 1.15142 1.20581 0.92230 0.89159 1.02949 1.20081 0.93093 0.84763 0.91244 0.90481 1.22288 1.03612 0.94329 0.96682 1.20576 0.97953 0.92183 0.84330 0.93250 1.45863 1.48537 1.34843 1.11060 1.18516 0.78679 0.78794 0.89394 1.90545 1.45284 1.62082 1.53548 1.21423 1.33907 1.11024 0.94965 0.89706 1.26901 0.91985 0.96638 1.02830 1.70169 1.21166 1.16784 1.36802 0.85080 0.78547 0.78580 0.76389 1.18616 1.17446 1.19862 1.22549 1.00353 0.99804 0.97119 1.22648 1.01978 0.80365 0.95288 1.87902 1.50206 1.19777 1.71168 0.89726 0.87891 0.88251 0.76921 0.82527 0.90353 0.89625 0.77312 0.91586 0.90726 0.93230 0.92550 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 11.27 127.77 1.44 2.89 16 2 N -0.37 -8.99 4.01 -356.02 -1.43 -10.42 16 3 N -0.32 -8.28 12.58 -57.02 -0.72 -9.00 16 4 C 0.04 0.93 12.03 85.24 1.03 1.96 16 5 C -0.26 -6.05 10.37 21.99 0.23 -5.82 16 6 C 0.08 1.96 6.00 41.41 0.25 2.20 16 7 C 0.17 4.20 2.90 29.88 0.09 4.29 16 8 H 0.08 1.79 6.95 -2.38 -0.02 1.77 16 9 C -0.13 -3.59 4.88 30.68 0.15 -3.45 16 10 C 0.16 5.62 2.54 45.11 0.11 5.74 16 11 H 0.05 2.06 7.58 -2.38 -0.02 2.04 16 12 N -0.75 -32.38 5.08 -446.26 -2.27 -34.65 16 13 C 0.54 30.53 7.71 86.36 0.67 31.19 16 14 O -0.63 -40.64 14.71 -4.29 -0.06 -40.70 16 15 C -0.58 -32.14 9.53 24.83 0.24 -31.90 16 16 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 17 C 0.03 1.75 5.49 85.31 0.47 2.22 16 18 N -0.82 -49.37 11.85 21.83 0.26 -49.12 16 19 Si 0.99 40.40 29.56 68.60 2.03 42.42 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 23 C -0.16 -5.27 5.72 30.69 0.18 -5.10 16 24 C 0.07 1.91 6.84 72.02 0.49 2.40 16 25 O -0.37 -9.73 10.10 -148.98 -1.51 -11.23 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.10 1.40 6.98 -2.39 -0.02 1.38 16 29 H 0.21 2.96 8.06 -2.91 -0.02 2.93 16 30 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 31 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.39 14.86 8.58 -92.71 -0.80 14.07 16 34 H 0.27 14.98 8.29 -92.71 -0.77 14.21 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -76.97 321.98 1.92 -75.05 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.28 Total: 31.02 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 5.33 Total: 6.62 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -4.15 Total: -103.18 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.57 Total: -51.94 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -76.97 1.92 -75.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640836530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.386 kcal (2) G-P(sol) polarization free energy of solvation -76.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds