Wall clock time and date at job start Tue Mar 31 2020 01:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36891 * 126.39965 * 2 1 4 4 C 1.34672 * 106.81690 * 180.25402 * 3 2 1 5 5 N 1.34122 * 108.01959 * 359.73697 * 4 3 2 6 6 C 1.30505 * 109.25951 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.64787 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47896 * 165.04506 * 7 6 5 9 9 C 1.53083 * 109.48451 * 285.07780 * 7 6 5 10 10 C 1.53176 * 109.16727 * 177.59354 * 9 7 6 11 11 H 1.08998 * 109.61983 * 183.11458 * 10 9 7 12 12 N 1.46499 * 109.54477 * 62.88691 * 10 9 7 13 13 C 1.34777 * 120.00195 * 155.44272 * 12 10 9 14 14 O 1.21683 * 120.00011 * 0.02562 * 13 12 10 15 15 C 1.46378 * 119.99801 * 179.97438 * 13 12 10 16 16 H 1.08001 * 119.99947 * 0.02562 * 15 13 12 17 17 C 1.40042 * 119.99532 * 180.02562 * 15 13 12 18 18 N 1.30674 * 120.00364 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99822 * 180.27790 * 17 15 13 20 20 H 1.48497 * 109.47322 * 179.72810 * 19 17 15 21 21 H 1.48498 * 109.47165 * 299.72757 * 19 17 15 22 22 H 1.48501 * 109.47099 * 59.72583 * 19 17 15 23 23 C 1.53185 * 109.03599 * 303.02188 * 10 9 7 24 24 C 1.53089 * 109.16099 * 56.97860 * 23 10 9 25 25 O 1.42907 * 109.41744 * 302.38937 * 24 23 10 26 26 H 1.08999 * 109.46946 * 270.19162 * 1 2 3 27 27 H 1.08998 * 109.47048 * 30.18881 * 1 2 3 28 28 H 1.08994 * 109.47217 * 150.19105 * 1 2 3 29 29 H 1.07997 * 126.59009 * 359.97037 * 3 2 1 30 30 H 1.08000 * 125.98635 * 179.76082 * 4 3 2 31 31 H 1.09009 * 109.52261 * 57.68753 * 9 7 6 32 32 H 1.09005 * 109.52436 * 297.50335 * 9 7 6 33 33 H 0.97000 * 119.99478 * 335.44994 * 12 10 9 34 34 H 0.97005 * 120.00029 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.52366 * 176.88304 * 23 10 9 36 36 H 1.09004 * 109.52160 * 297.07537 * 23 10 9 37 37 H 1.08994 * 109.48372 * 62.37478 * 24 23 10 38 38 H 1.09002 * 109.47972 * 182.39614 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0033 6 6 2.2663 -1.0870 0.0032 7 6 1.8018 -2.5206 0.0073 8 1 0.7466 -2.5600 0.2776 9 6 1.9949 -3.1238 -1.3864 10 6 1.5771 -4.5973 -1.3589 11 1 1.7635 -5.0488 -2.3333 12 7 0.1513 -4.6965 -1.0374 13 6 -0.5531 -5.7784 -1.4244 14 8 -0.0047 -6.6730 -2.0405 15 6 -1.9776 -5.8777 -1.1027 16 1 -2.4643 -5.0838 -0.5556 17 6 -2.7094 -7.0022 -1.5044 18 7 -2.1204 -7.9629 -2.1659 19 14 -4.5291 -7.1254 -1.1006 20 1 -5.0701 -8.3997 -1.6377 21 1 -4.7126 -7.0917 0.3726 22 1 -5.2511 -5.9828 -1.7156 23 6 2.3954 -5.3288 -0.2903 24 6 2.1868 -4.6404 1.0610 25 8 2.5654 -3.2662 0.9577 26 1 -0.3633 0.0034 1.0277 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8916 -0.5108 29 1 1.9614 2.1346 -0.0004 30 1 4.4369 1.2611 -0.0109 31 1 3.0436 -3.0479 -1.6741 32 1 1.3789 -2.5839 -2.1056 33 1 -0.2858 -3.9834 -0.5461 34 1 -2.6272 -8.7419 -2.4438 35 1 2.0658 -6.3657 -0.2256 36 1 3.4521 -5.2973 -0.5558 37 1 1.1366 -4.7077 1.3450 38 1 2.7999 -5.1306 1.8172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642507254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:43 Heat of formation + Delta-G solvation = -20.585056 kcal Electronic energy + Delta-G solvation = -22211.983517 eV Core-core repulsion = 18862.620719 eV Total energy + Delta-G solvation = -3349.362799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15076 -39.41994 -36.96293 -34.13919 -33.98712 -32.46187 -32.01579 -30.35107 -28.68645 -27.11763 -26.29569 -24.50905 -23.46008 -21.48736 -20.71444 -19.99427 -18.53664 -17.66710 -17.02977 -16.07144 -15.72917 -15.61374 -15.32007 -14.98800 -14.52111 -14.10467 -14.05182 -13.69007 -13.45949 -13.03408 -12.84797 -12.57721 -12.47668 -12.18875 -11.96933 -11.67368 -11.16259 -11.12322 -11.02517 -10.59293 -10.48803 -10.33341 -10.06529 -9.91219 -9.64931 -9.27446 -8.89746 -8.40309 -7.68299 -7.59377 -6.23790 -4.70557 1.92743 2.59858 3.10724 3.12389 3.16337 3.17739 3.93646 4.05001 4.42567 4.53675 4.57985 4.72589 4.79510 4.93261 5.01588 5.10813 5.24223 5.29283 5.35724 5.43322 5.54276 5.63960 5.79656 5.80232 5.85434 6.14902 6.20760 6.36536 6.40052 6.54455 6.63916 6.72442 7.03880 7.36953 7.39811 7.82605 8.01716 8.13503 8.25015 8.96697 9.45100 10.54394 10.72795 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.004564 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.849617 B = 6133.807104 C = 6843.680147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.455 5.455 3 C -0.060 4.060 4 C -0.032 4.032 5 N -0.466 5.466 6 C 0.216 3.784 7 C 0.184 3.816 8 H 0.068 0.932 9 C -0.145 4.145 10 C 0.155 3.845 11 H 0.085 0.915 12 N -0.763 5.763 13 C 0.556 3.444 14 O -0.577 6.577 15 C -0.547 4.547 16 H 0.065 0.935 17 C 0.089 3.911 18 N -0.766 5.766 19 Si 0.906 3.094 20 H -0.280 1.280 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.164 4.164 24 C 0.065 3.935 25 O -0.366 6.366 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.374 0.626 34 H 0.269 0.731 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.783 15.578 5.106 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.139 5.139 3 C -0.193 4.193 4 C -0.181 4.181 5 N -0.184 5.184 6 C -0.047 4.047 7 C 0.124 3.876 8 H 0.086 0.914 9 C -0.184 4.184 10 C 0.048 3.952 11 H 0.103 0.897 12 N -0.419 5.419 13 C 0.360 3.640 14 O -0.460 6.460 15 C -0.584 4.584 16 H 0.083 0.917 17 C -0.131 4.131 18 N -0.395 5.395 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.203 4.203 24 C -0.011 4.011 25 O -0.284 6.284 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.192 0.808 30 H 0.187 0.813 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.205 0.795 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.844 14.274 4.646 15.773 hybrid contribution -2.085 0.883 0.324 2.288 sum 2.759 15.157 4.970 16.188 Atomic orbital electron populations 1.22151 0.76461 1.05167 1.03970 1.45256 1.07672 1.06381 1.54544 1.22687 0.91439 0.92337 1.12848 1.22369 0.96368 0.91378 1.07993 1.70268 1.18385 1.11480 1.18306 1.22765 0.85881 0.90023 1.06007 1.19894 0.93831 0.83115 0.90718 0.91393 1.22425 1.03522 0.96874 0.95604 1.20514 0.83503 0.92297 0.98839 0.89735 1.46300 1.07582 1.24505 1.63499 1.18196 0.87206 0.79804 0.78796 1.90606 1.71778 1.39317 1.44251 1.20829 0.93000 1.05697 1.38903 0.91660 1.25683 0.99533 0.94814 0.93092 1.70002 1.36468 1.05834 1.27192 0.86462 0.82959 0.78079 0.79403 1.20532 1.19312 1.19342 1.22560 1.00338 1.01543 0.95892 1.22612 1.00415 0.80475 0.97588 1.87964 1.59785 1.21692 1.58945 0.90207 0.89333 0.88948 0.80843 0.81346 0.89512 0.90845 0.79467 0.92007 0.89850 0.91297 0.92543 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.75 59.85 0.64 1.16 16 2 N -0.46 -5.38 3.15 -121.28 -0.38 -5.76 16 3 C -0.06 -0.65 11.58 -16.56 -0.19 -0.84 16 4 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 5 N -0.47 -7.58 11.25 -10.82 -0.12 -7.70 16 6 C 0.22 3.22 6.79 -155.41 -1.06 2.17 16 7 C 0.18 2.78 2.74 -27.84 -0.08 2.70 16 8 H 0.07 0.94 5.66 -51.93 -0.29 0.65 16 9 C -0.15 -2.27 5.05 -26.60 -0.13 -2.40 16 10 C 0.15 2.89 2.81 -67.74 -0.19 2.70 16 11 H 0.08 1.79 7.59 -51.93 -0.39 1.40 16 12 N -0.76 -15.91 4.40 -55.03 -0.24 -16.15 16 13 C 0.56 15.01 7.71 -12.99 -0.10 14.91 16 14 O -0.58 -17.93 14.69 5.20 0.08 -17.86 16 15 C -0.55 -14.79 9.54 -35.63 -0.34 -15.13 16 16 H 0.07 1.60 7.85 -52.49 -0.41 1.19 16 17 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 18 N -0.77 -22.41 11.83 55.55 0.66 -21.76 16 19 Si 0.91 19.50 29.56 -169.99 -5.02 14.48 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.16 -2.88 5.80 -26.59 -0.15 -3.03 16 24 C 0.07 1.04 6.68 37.20 0.25 1.29 16 25 O -0.37 -6.11 10.39 -35.23 -0.37 -6.47 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.75 7.33 -51.93 -0.38 0.37 16 29 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.37 6.81 7.05 -40.82 -0.29 6.52 16 34 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -35.66 318.03 -7.38 -43.04 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.11 Total: 8.17 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.66 Total: 5.22 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.09 Total: -51.37 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.29 Total: -24.33 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.66 -7.38 -43.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.455 kcal (2) G-P(sol) polarization free energy of solvation -35.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds