Wall clock time and date at job start Tue Mar 31 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36891 * 126.39965 * 2 1 4 4 C 1.34672 * 106.81690 * 180.25402 * 3 2 1 5 5 N 1.34122 * 108.01959 * 359.73697 * 4 3 2 6 6 C 1.30505 * 109.25951 * 0.02562 * 5 4 3 7 7 C 1.50699 * 125.64787 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47896 * 165.04506 * 7 6 5 9 9 C 1.53083 * 109.48451 * 285.07780 * 7 6 5 10 10 C 1.53176 * 109.16727 * 177.59354 * 9 7 6 11 11 H 1.08998 * 109.61983 * 183.11458 * 10 9 7 12 12 N 1.46499 * 109.54477 * 62.88691 * 10 9 7 13 13 C 1.34777 * 120.00195 * 155.44272 * 12 10 9 14 14 O 1.21683 * 120.00011 * 0.02562 * 13 12 10 15 15 C 1.46378 * 119.99801 * 179.97438 * 13 12 10 16 16 H 1.08001 * 119.99947 * 0.02562 * 15 13 12 17 17 C 1.40042 * 119.99532 * 180.02562 * 15 13 12 18 18 N 1.30674 * 120.00364 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99822 * 180.27790 * 17 15 13 20 20 H 1.48497 * 109.47322 * 179.72810 * 19 17 15 21 21 H 1.48498 * 109.47165 * 299.72757 * 19 17 15 22 22 H 1.48501 * 109.47099 * 59.72583 * 19 17 15 23 23 C 1.53185 * 109.03599 * 303.02188 * 10 9 7 24 24 C 1.53089 * 109.16099 * 56.97860 * 23 10 9 25 25 O 1.42907 * 109.41744 * 302.38937 * 24 23 10 26 26 H 1.08999 * 109.46946 * 270.19162 * 1 2 3 27 27 H 1.08998 * 109.47048 * 30.18881 * 1 2 3 28 28 H 1.08994 * 109.47217 * 150.19105 * 1 2 3 29 29 H 1.07997 * 126.59009 * 359.97037 * 3 2 1 30 30 H 1.08000 * 125.98635 * 179.76082 * 4 3 2 31 31 H 1.09009 * 109.52261 * 57.68753 * 9 7 6 32 32 H 1.09005 * 109.52436 * 297.50335 * 9 7 6 33 33 H 0.97000 * 119.99478 * 335.44994 * 12 10 9 34 34 H 0.97005 * 120.00029 * 179.97438 * 18 17 15 35 35 H 1.08995 * 109.52366 * 176.88304 * 23 10 9 36 36 H 1.09004 * 109.52160 * 297.07537 * 23 10 9 37 37 H 1.08994 * 109.48372 * 62.37478 * 24 23 10 38 38 H 1.09002 * 109.47972 * 182.39614 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0033 6 6 2.2663 -1.0870 0.0032 7 6 1.8018 -2.5206 0.0073 8 1 0.7466 -2.5600 0.2776 9 6 1.9949 -3.1238 -1.3864 10 6 1.5771 -4.5973 -1.3589 11 1 1.7635 -5.0488 -2.3333 12 7 0.1513 -4.6965 -1.0374 13 6 -0.5531 -5.7784 -1.4244 14 8 -0.0047 -6.6730 -2.0405 15 6 -1.9776 -5.8777 -1.1027 16 1 -2.4643 -5.0838 -0.5556 17 6 -2.7094 -7.0022 -1.5044 18 7 -2.1204 -7.9629 -2.1659 19 14 -4.5291 -7.1254 -1.1006 20 1 -5.0701 -8.3997 -1.6377 21 1 -4.7126 -7.0917 0.3726 22 1 -5.2511 -5.9828 -1.7156 23 6 2.3954 -5.3288 -0.2903 24 6 2.1868 -4.6404 1.0610 25 8 2.5654 -3.2662 0.9577 26 1 -0.3633 0.0034 1.0277 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8916 -0.5108 29 1 1.9614 2.1346 -0.0004 30 1 4.4369 1.2611 -0.0109 31 1 3.0436 -3.0479 -1.6741 32 1 1.3789 -2.5839 -2.1056 33 1 -0.2858 -3.9834 -0.5461 34 1 -2.6272 -8.7419 -2.4438 35 1 2.0658 -6.3657 -0.2256 36 1 3.4521 -5.2973 -0.5558 37 1 1.1366 -4.7077 1.3450 38 1 2.7999 -5.1306 1.8172 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642507254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:42 Heat of formation + Delta-G solvation = -46.551290 kcal Electronic energy + Delta-G solvation = -22213.109498 eV Core-core repulsion = 18862.620719 eV Total energy + Delta-G solvation = -3350.488779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.09064 -40.86579 -38.84479 -35.75031 -34.93798 -34.51097 -33.23637 -32.10469 -29.76752 -28.30895 -27.83950 -25.84419 -24.78282 -22.74782 -22.18343 -21.10002 -20.12106 -19.35969 -18.19805 -17.43193 -17.22150 -16.92873 -16.73721 -16.27380 -15.94252 -15.72586 -15.33240 -14.85301 -14.50110 -14.36149 -14.09049 -13.78693 -13.72251 -13.52885 -13.39452 -13.29822 -12.90131 -12.72786 -12.59212 -12.42681 -12.07688 -11.99704 -11.45681 -10.91292 -10.89944 -10.62015 -10.54573 -9.83546 -9.48769 -9.34286 -8.26814 -6.83510 1.00841 1.41772 1.44555 1.56175 1.74327 2.14162 2.25255 2.49977 2.83544 3.04585 3.32399 3.62198 3.73113 3.78037 3.95157 3.98153 4.01935 4.12304 4.16927 4.40237 4.42975 4.54135 4.61092 4.69324 4.74999 4.82294 4.91028 4.99162 5.02257 5.13966 5.33494 5.34572 5.85322 5.88443 6.05097 6.21509 6.23754 6.27533 6.89205 7.17753 7.54858 8.51955 8.69844 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024114 B = 0.004564 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.849617 B = 6133.807104 C = 6843.680147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.452 5.452 3 C -0.037 4.037 4 C -0.063 4.063 5 N -0.507 5.507 6 C 0.185 3.815 7 C 0.188 3.812 8 H 0.081 0.919 9 C -0.129 4.129 10 C 0.154 3.846 11 H 0.052 0.948 12 N -0.746 5.746 13 C 0.542 3.458 14 O -0.628 6.628 15 C -0.572 4.572 16 H 0.089 0.911 17 C 0.031 3.969 18 N -0.822 5.822 19 Si 0.994 3.006 20 H -0.278 1.278 21 H -0.254 1.254 22 H -0.253 1.253 23 C -0.159 4.159 24 C 0.074 3.926 25 O -0.376 6.376 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.218 0.782 30 H 0.188 0.812 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.390 0.610 34 H 0.273 0.727 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 18.286 6.364 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.135 5.135 3 C -0.171 4.171 4 C -0.211 4.211 5 N -0.227 5.227 6 C -0.077 4.077 7 C 0.128 3.872 8 H 0.098 0.902 9 C -0.168 4.168 10 C 0.048 3.952 11 H 0.070 0.930 12 N -0.400 5.400 13 C 0.347 3.653 14 O -0.515 6.515 15 C -0.609 4.609 16 H 0.107 0.893 17 C -0.185 4.185 18 N -0.451 5.451 19 Si 0.814 3.186 20 H -0.203 1.203 21 H -0.178 1.178 22 H -0.177 1.177 23 C -0.198 4.198 24 C -0.003 4.003 25 O -0.294 6.294 26 H 0.112 0.888 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.205 0.795 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.224 0.776 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.052 17.041 5.932 18.301 hybrid contribution -1.446 0.150 -0.082 1.456 sum 1.606 17.191 5.850 18.230 Atomic orbital electron populations 1.22469 0.74252 1.06497 1.05325 1.45489 1.09046 1.05758 1.53184 1.23369 0.90544 0.93678 1.09503 1.22854 0.98380 0.90530 1.09307 1.70163 1.19650 1.13619 1.19222 1.22522 0.86363 0.90336 1.08492 1.19873 0.94319 0.83538 0.89433 0.90171 1.22246 1.03272 0.94372 0.96882 1.20549 0.82392 0.94578 0.97642 0.92955 1.45879 1.08317 1.23346 1.62501 1.18551 0.87991 0.80369 0.78421 1.90567 1.72846 1.41556 1.46533 1.21386 0.93382 1.06795 1.39292 0.89291 1.26920 1.05449 0.93906 0.92177 1.70185 1.39180 1.06878 1.28886 0.85120 0.75306 0.78423 0.79764 1.20339 1.17835 1.17739 1.22470 1.00660 0.99779 0.96912 1.22566 1.00646 0.80413 0.96651 1.87969 1.60384 1.21681 1.59359 0.88830 0.86418 0.89321 0.76568 0.79507 0.89834 0.89989 0.77594 0.91698 0.92891 0.90079 0.92956 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 10.75 127.77 1.37 2.07 16 2 N -0.45 -9.40 3.15 -537.62 -1.69 -11.10 16 3 C -0.04 -0.67 11.58 83.09 0.96 0.29 16 4 C -0.06 -1.48 11.87 83.53 0.99 -0.49 16 5 N -0.51 -16.02 11.25 -188.13 -2.12 -18.14 16 6 C 0.19 5.26 6.79 138.13 0.94 6.20 16 7 C 0.19 5.48 2.74 29.88 0.08 5.56 16 8 H 0.08 2.09 5.66 -2.39 -0.01 2.08 16 9 C -0.13 -4.01 5.05 30.68 0.16 -3.85 16 10 C 0.15 5.94 2.81 45.11 0.13 6.06 16 11 H 0.05 2.35 7.59 -2.39 -0.02 2.33 16 12 N -0.75 -31.48 4.40 -446.25 -1.96 -33.44 16 13 C 0.54 30.09 7.71 86.36 0.67 30.76 16 14 O -0.63 -40.93 14.69 -4.29 -0.06 -40.99 16 15 C -0.57 -30.93 9.54 24.83 0.24 -30.69 16 16 H 0.09 4.22 7.85 -2.91 -0.02 4.20 16 17 C 0.03 1.66 5.50 85.30 0.47 2.13 16 18 N -0.82 -49.37 11.83 21.83 0.26 -49.11 16 19 Si 0.99 39.44 29.56 68.60 2.03 41.47 16 20 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 22 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 23 C -0.16 -5.75 5.80 30.69 0.18 -5.57 16 24 C 0.07 2.30 6.68 72.01 0.48 2.78 16 25 O -0.38 -12.25 10.39 -148.98 -1.55 -13.79 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 1.19 7.33 -2.39 -0.02 1.18 16 29 H 0.22 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.39 13.92 7.05 -92.71 -0.65 13.27 16 34 H 0.27 14.97 8.29 -92.70 -0.77 14.21 16 35 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 37 H 0.05 1.67 7.75 -2.39 -0.02 1.66 16 38 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -80.64 318.03 1.99 -78.65 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.42 Total: 31.19 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.66 Total: 15.26 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -5.51 Total: -111.79 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -1.61 Total: -54.79 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -80.64 1.99 -78.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.103 kcal (2) G-P(sol) polarization free energy of solvation -80.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds