Wall clock time and date at job start Tue Mar 31 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36874 * 126.39529 * 2 1 4 4 C 1.34675 * 106.81768 * 179.97438 * 3 2 1 5 5 N 1.34128 * 108.01655 * 359.97438 * 4 3 2 6 6 C 1.30499 * 109.26095 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.65164 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47660 * 194.97888 * 7 6 5 9 9 C 1.53086 * 109.48083 * 74.93965 * 7 6 5 10 10 C 1.53174 * 109.16160 * 182.40553 * 9 7 6 11 11 H 1.09006 * 109.54381 * 176.84935 * 10 9 7 12 12 N 1.46499 * 109.54755 * 297.11598 * 10 9 7 13 13 C 1.34781 * 119.99998 * 204.55581 * 12 10 9 14 14 O 1.21689 * 119.99979 * 0.02562 * 13 12 10 15 15 C 1.46373 * 119.99516 * 180.02562 * 13 12 10 16 16 H 1.07999 * 120.00475 * 359.97438 * 15 13 12 17 17 C 1.40058 * 119.99737 * 180.02562 * 15 13 12 18 18 N 1.30675 * 119.99541 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99963 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47120 * 89.99985 * 19 17 15 21 21 H 1.48494 * 109.46714 * 209.99760 * 19 17 15 22 22 H 1.48498 * 109.46785 * 329.99565 * 19 17 15 23 23 C 1.53180 * 109.03614 * 56.98609 * 10 9 7 24 24 C 1.53092 * 109.16015 * 303.01541 * 23 10 9 25 25 O 1.42899 * 109.47750 * 314.99896 * 7 6 5 26 26 H 1.09004 * 109.46608 * 90.02833 * 1 2 3 27 27 H 1.09003 * 109.47023 * 210.02186 * 1 2 3 28 28 H 1.08996 * 109.47506 * 330.02406 * 1 2 3 29 29 H 1.07999 * 126.59384 * 359.97438 * 3 2 1 30 30 H 1.08002 * 125.98988 * 179.73289 * 4 3 2 31 31 H 1.08993 * 109.52448 * 302.31662 * 9 7 6 32 32 H 1.09005 * 109.52105 * 62.50309 * 9 7 6 33 33 H 0.96993 * 119.99976 * 24.55696 * 12 10 9 34 34 H 0.97004 * 119.99093 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.52551 * 183.11238 * 23 10 9 36 36 H 1.09002 * 109.52118 * 62.92351 * 23 10 9 37 37 H 1.09003 * 109.48323 * 297.62519 * 24 23 10 38 38 H 1.08999 * 109.48968 * 177.59252 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0006 5 7 3.5095 -0.6903 0.0015 6 6 2.2663 -1.0871 0.0009 7 6 1.8018 -2.5207 0.0022 8 1 0.7457 -2.5607 -0.2642 9 6 2.0001 -3.1204 1.3967 10 6 1.5822 -4.5938 1.3744 11 1 1.7733 -5.0419 2.3496 12 7 0.1552 -4.6939 1.0584 13 6 -0.5477 -5.7749 1.4507 14 8 0.0028 -6.6676 2.0678 15 6 -1.9734 -5.8750 1.1344 16 1 -2.4621 -5.0825 0.5871 17 6 -2.7040 -6.9980 1.5425 18 7 -2.1127 -7.9566 2.2052 19 14 -4.5233 -7.1262 1.1383 20 1 -4.6925 -7.8013 -0.1734 21 1 -5.2102 -7.9142 2.1929 22 1 -5.1131 -5.7648 1.0742 23 6 2.3966 -5.3280 0.3048 24 6 2.1830 -4.6430 -1.0476 25 8 2.5620 -3.2686 -0.9490 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5134 29 1 1.9612 2.1345 -0.0004 30 1 4.4369 1.2612 -0.0033 31 1 3.0497 -3.0436 1.6803 32 1 1.3867 -2.5786 2.1167 33 1 -0.2837 -3.9822 0.5669 34 1 -2.6187 -8.7346 2.4874 35 1 2.0668 -6.3652 0.2438 36 1 3.4543 -5.2959 0.5664 37 1 1.1318 -4.7111 -1.3276 38 1 2.7935 -5.1350 -1.8048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642507255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:45 Heat of formation + Delta-G solvation = -20.629240 kcal Electronic energy + Delta-G solvation = -22211.770995 eV Core-core repulsion = 18862.406280 eV Total energy + Delta-G solvation = -3349.364715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15122 -39.42043 -36.96223 -34.13823 -33.98749 -32.46260 -32.01574 -30.35142 -28.68726 -27.11665 -26.29631 -24.50944 -23.46015 -21.48809 -20.71464 -19.99402 -18.53657 -17.66741 -17.03065 -16.07476 -15.72678 -15.61428 -15.32219 -14.99006 -14.52150 -14.10124 -14.04932 -13.68918 -13.46106 -13.03149 -12.84900 -12.58384 -12.47612 -12.18806 -11.97023 -11.67465 -11.15099 -11.13200 -11.03549 -10.59589 -10.48635 -10.31649 -10.06221 -9.91220 -9.64939 -9.27388 -8.90477 -8.40361 -7.68165 -7.59386 -6.24131 -4.70616 1.92793 2.59932 3.09271 3.12307 3.16408 3.19072 3.93749 4.04882 4.42604 4.53536 4.57975 4.72583 4.79491 4.93279 5.01606 5.10795 5.24246 5.29276 5.35729 5.43266 5.54251 5.63958 5.79634 5.80151 5.85407 6.14963 6.20816 6.36528 6.40011 6.54430 6.63871 6.72456 7.03896 7.37009 7.39807 7.82649 8.01740 8.13524 8.25186 8.96663 9.45042 10.54171 10.72670 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.004563 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.715145 B = 6134.881386 C = 6843.631716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.455 5.455 3 C -0.060 4.060 4 C -0.032 4.032 5 N -0.466 5.466 6 C 0.216 3.784 7 C 0.184 3.816 8 H 0.068 0.932 9 C -0.145 4.145 10 C 0.155 3.845 11 H 0.085 0.915 12 N -0.763 5.763 13 C 0.556 3.444 14 O -0.577 6.577 15 C -0.547 4.547 16 H 0.066 0.934 17 C 0.088 3.912 18 N -0.766 5.766 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.164 4.164 24 C 0.065 3.935 25 O -0.366 6.366 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.374 0.626 34 H 0.268 0.732 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 15.572 -5.181 16.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.138 5.138 3 C -0.193 4.193 4 C -0.181 4.181 5 N -0.184 5.184 6 C -0.047 4.047 7 C 0.124 3.876 8 H 0.086 0.914 9 C -0.184 4.184 10 C 0.049 3.951 11 H 0.103 0.897 12 N -0.419 5.419 13 C 0.360 3.640 14 O -0.460 6.460 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.731 3.269 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.203 4.203 24 C -0.011 4.011 25 O -0.284 6.284 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.192 0.808 30 H 0.187 0.813 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.205 0.795 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.825 14.274 -4.727 15.792 hybrid contribution -2.081 0.869 -0.320 2.277 sum 2.745 15.143 -5.048 16.196 Atomic orbital electron populations 1.22154 0.76460 1.05163 1.03975 1.45256 1.07674 1.06382 1.54535 1.22684 0.91444 0.92339 1.12837 1.22371 0.96366 0.91376 1.08005 1.70267 1.18392 1.11477 1.18299 1.22768 0.85878 0.90021 1.06018 1.19894 0.93870 0.83095 0.90701 0.91393 1.22425 1.03520 0.96893 0.95591 1.20511 0.83502 0.92283 0.98852 0.89742 1.46298 1.07470 1.24648 1.63463 1.18207 0.87248 0.79787 0.78781 1.90607 1.71713 1.39425 1.44207 1.20865 0.92889 1.05847 1.38792 0.91614 1.25692 0.99554 0.94822 0.93082 1.70016 1.36388 1.05911 1.27159 0.86399 0.82890 0.78938 0.78676 1.19736 1.20447 1.18996 1.22559 1.00348 1.01550 0.95875 1.22614 1.00402 0.80476 0.97596 1.87963 1.60012 1.21600 1.58815 0.90198 0.88955 0.89333 0.80842 0.81346 0.89512 0.90843 0.79461 0.92070 0.89852 0.91296 0.92542 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.75 59.85 0.64 1.17 16 2 N -0.46 -5.38 3.15 -121.27 -0.38 -5.76 16 3 C -0.06 -0.65 11.58 -16.56 -0.19 -0.84 16 4 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 5 N -0.47 -7.58 11.25 -10.81 -0.12 -7.70 16 6 C 0.22 3.22 6.79 -155.41 -1.06 2.17 16 7 C 0.18 2.78 2.74 -27.84 -0.08 2.70 16 8 H 0.07 0.94 5.65 -51.93 -0.29 0.65 16 9 C -0.15 -2.27 5.05 -26.60 -0.13 -2.40 16 10 C 0.16 2.89 2.81 -67.75 -0.19 2.70 16 11 H 0.08 1.79 7.59 -51.93 -0.39 1.39 16 12 N -0.76 -15.91 4.40 -55.03 -0.24 -16.15 16 13 C 0.56 15.01 7.71 -12.99 -0.10 14.91 16 14 O -0.58 -17.93 14.69 5.20 0.08 -17.86 16 15 C -0.55 -14.78 9.54 -35.63 -0.34 -15.12 16 16 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 17 C 0.09 2.39 5.50 -17.36 -0.10 2.30 16 18 N -0.77 -22.41 11.83 55.55 0.66 -21.75 16 19 Si 0.91 19.50 29.56 -169.99 -5.02 14.48 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.16 -2.88 5.80 -26.59 -0.15 -3.03 16 24 C 0.07 1.04 6.68 37.21 0.25 1.29 16 25 O -0.37 -6.11 10.39 -35.23 -0.37 -6.47 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.75 7.33 -51.93 -0.38 0.37 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.37 6.81 7.05 -40.82 -0.29 6.53 16 34 H 0.27 7.14 8.29 -40.82 -0.34 6.81 16 35 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 318.03 15.07 4.79 4.79 Total: -1.00 -35.69 318.03 -7.38 -43.07 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.11 Total: 8.15 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.66 Total: 5.21 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.09 Total: -51.36 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.29 Total: -24.33 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.69 -7.38 -43.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.436 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds