Wall clock time and date at job start Tue Mar 31 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36874 * 126.39529 * 2 1 4 4 C 1.34675 * 106.81768 * 179.97438 * 3 2 1 5 5 N 1.34128 * 108.01655 * 359.97438 * 4 3 2 6 6 C 1.30499 * 109.26095 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.65164 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47660 * 194.97888 * 7 6 5 9 9 C 1.53086 * 109.48083 * 74.93965 * 7 6 5 10 10 C 1.53174 * 109.16160 * 182.40553 * 9 7 6 11 11 H 1.09006 * 109.54381 * 176.84935 * 10 9 7 12 12 N 1.46499 * 109.54755 * 297.11598 * 10 9 7 13 13 C 1.34781 * 119.99998 * 204.55581 * 12 10 9 14 14 O 1.21689 * 119.99979 * 0.02562 * 13 12 10 15 15 C 1.46373 * 119.99516 * 180.02562 * 13 12 10 16 16 H 1.07999 * 120.00475 * 359.97438 * 15 13 12 17 17 C 1.40058 * 119.99737 * 180.02562 * 15 13 12 18 18 N 1.30675 * 119.99541 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99963 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47120 * 89.99985 * 19 17 15 21 21 H 1.48494 * 109.46714 * 209.99760 * 19 17 15 22 22 H 1.48498 * 109.46785 * 329.99565 * 19 17 15 23 23 C 1.53180 * 109.03614 * 56.98609 * 10 9 7 24 24 C 1.53092 * 109.16015 * 303.01541 * 23 10 9 25 25 O 1.42899 * 109.47750 * 314.99896 * 7 6 5 26 26 H 1.09004 * 109.46608 * 90.02833 * 1 2 3 27 27 H 1.09003 * 109.47023 * 210.02186 * 1 2 3 28 28 H 1.08996 * 109.47506 * 330.02406 * 1 2 3 29 29 H 1.07999 * 126.59384 * 359.97438 * 3 2 1 30 30 H 1.08002 * 125.98988 * 179.73289 * 4 3 2 31 31 H 1.08993 * 109.52448 * 302.31662 * 9 7 6 32 32 H 1.09005 * 109.52105 * 62.50309 * 9 7 6 33 33 H 0.96993 * 119.99976 * 24.55696 * 12 10 9 34 34 H 0.97004 * 119.99093 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.52551 * 183.11238 * 23 10 9 36 36 H 1.09002 * 109.52118 * 62.92351 * 23 10 9 37 37 H 1.09003 * 109.48323 * 297.62519 * 24 23 10 38 38 H 1.08999 * 109.48968 * 177.59252 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0006 5 7 3.5095 -0.6903 0.0015 6 6 2.2663 -1.0871 0.0009 7 6 1.8018 -2.5207 0.0022 8 1 0.7457 -2.5607 -0.2642 9 6 2.0001 -3.1204 1.3967 10 6 1.5822 -4.5938 1.3744 11 1 1.7733 -5.0419 2.3496 12 7 0.1552 -4.6939 1.0584 13 6 -0.5477 -5.7749 1.4507 14 8 0.0028 -6.6676 2.0678 15 6 -1.9734 -5.8750 1.1344 16 1 -2.4621 -5.0825 0.5871 17 6 -2.7040 -6.9980 1.5425 18 7 -2.1127 -7.9566 2.2052 19 14 -4.5233 -7.1262 1.1383 20 1 -4.6925 -7.8013 -0.1734 21 1 -5.2102 -7.9142 2.1929 22 1 -5.1131 -5.7648 1.0742 23 6 2.3966 -5.3280 0.3048 24 6 2.1830 -4.6430 -1.0476 25 8 2.5620 -3.2686 -0.9490 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5134 29 1 1.9612 2.1345 -0.0004 30 1 4.4369 1.2612 -0.0033 31 1 3.0497 -3.0436 1.6803 32 1 1.3867 -2.5786 2.1167 33 1 -0.2837 -3.9822 0.5669 34 1 -2.6187 -8.7346 2.4874 35 1 2.0668 -6.3652 0.2438 36 1 3.4543 -5.2959 0.5664 37 1 1.1318 -4.7111 -1.3276 38 1 2.7935 -5.1350 -1.8048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642507255.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:44 Heat of formation + Delta-G solvation = -46.618472 kcal Electronic energy + Delta-G solvation = -22212.897973 eV Core-core repulsion = 18862.406280 eV Total energy + Delta-G solvation = -3350.491692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.09111 -40.86591 -38.84430 -35.75043 -34.93731 -34.51189 -33.23607 -32.10518 -29.76821 -28.31019 -27.83876 -25.84428 -24.78266 -22.74896 -22.18369 -21.09971 -20.12068 -19.36117 -18.19867 -17.43511 -17.22407 -16.92689 -16.73827 -16.27428 -15.93737 -15.72472 -15.33322 -14.85296 -14.50821 -14.36170 -14.09124 -13.78358 -13.72240 -13.53063 -13.39406 -13.29713 -12.89349 -12.76309 -12.59416 -12.42641 -12.04075 -11.98963 -11.45653 -10.92453 -10.90465 -10.61972 -10.54551 -9.83340 -9.48805 -9.34315 -8.27177 -6.83581 1.00892 1.41822 1.42750 1.57715 1.74399 2.14087 2.25095 2.49840 2.83645 3.04564 3.32441 3.62101 3.73127 3.77994 3.95164 3.98193 4.01878 4.12296 4.16944 4.40211 4.42982 4.54172 4.61120 4.69308 4.74993 4.82321 4.90981 4.99172 5.02311 5.13957 5.33668 5.34628 5.85339 5.88480 6.05144 6.21523 6.23755 6.27606 6.89146 7.17772 7.54800 8.51849 8.69758 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.004563 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.715145 B = 6134.881386 C = 6843.631716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.452 5.452 3 C -0.037 4.037 4 C -0.063 4.063 5 N -0.507 5.507 6 C 0.185 3.815 7 C 0.188 3.812 8 H 0.081 0.919 9 C -0.129 4.129 10 C 0.154 3.846 11 H 0.052 0.948 12 N -0.745 5.745 13 C 0.542 3.458 14 O -0.628 6.628 15 C -0.571 4.571 16 H 0.089 0.911 17 C 0.030 3.970 18 N -0.822 5.822 19 Si 0.994 3.006 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.246 1.246 23 C -0.159 4.159 24 C 0.074 3.926 25 O -0.376 6.376 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.117 0.883 29 H 0.218 0.782 30 H 0.188 0.812 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.390 0.610 34 H 0.273 0.727 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 18.284 -6.441 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.135 5.135 3 C -0.171 4.171 4 C -0.211 4.211 5 N -0.227 5.227 6 C -0.077 4.077 7 C 0.128 3.872 8 H 0.098 0.902 9 C -0.168 4.168 10 C 0.048 3.952 11 H 0.070 0.930 12 N -0.400 5.400 13 C 0.347 3.653 14 O -0.515 6.515 15 C -0.608 4.608 16 H 0.107 0.893 17 C -0.185 4.185 18 N -0.451 5.451 19 Si 0.814 3.186 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.170 1.170 23 C -0.198 4.198 24 C -0.003 4.003 25 O -0.294 6.294 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.136 0.864 29 H 0.234 0.766 30 H 0.205 0.795 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.224 0.776 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.032 17.044 -6.016 18.327 hybrid contribution -1.441 0.132 0.086 1.449 sum 1.591 17.177 -5.931 18.241 Atomic orbital electron populations 1.22472 0.74252 1.06501 1.05319 1.45489 1.09047 1.05760 1.53176 1.23366 0.90549 0.93680 1.09491 1.22857 0.98378 0.90527 1.09318 1.70161 1.19657 1.13617 1.19216 1.22525 0.86360 0.90335 1.08502 1.19873 0.94361 0.83518 0.89414 0.90171 1.22245 1.03267 0.94390 0.96871 1.20546 0.82383 0.94571 0.97660 0.92957 1.45877 1.08214 1.23485 1.62459 1.18560 0.88028 0.80351 0.78408 1.90569 1.72778 1.41664 1.46492 1.21415 0.93267 1.06931 1.39177 0.89290 1.26929 1.05469 0.93918 0.92168 1.70195 1.39129 1.06972 1.28834 0.85063 0.75247 0.79793 0.78481 1.18808 1.20186 1.16961 1.22469 1.00674 0.99780 0.96896 1.22569 1.00632 0.80417 0.96659 1.87968 1.60606 1.21592 1.59229 0.88827 0.89329 0.86413 0.76565 0.79507 0.89834 0.89992 0.77590 0.91708 0.92892 0.90080 0.92946 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.70 10.75 127.77 1.37 2.07 16 2 N -0.45 -9.40 3.15 -537.60 -1.69 -11.10 16 3 C -0.04 -0.67 11.58 83.09 0.96 0.29 16 4 C -0.06 -1.49 11.87 83.52 0.99 -0.49 16 5 N -0.51 -16.02 11.25 -188.12 -2.12 -18.14 16 6 C 0.18 5.26 6.79 138.13 0.94 6.20 16 7 C 0.19 5.48 2.74 29.88 0.08 5.56 16 8 H 0.08 2.09 5.65 -2.39 -0.01 2.08 16 9 C -0.13 -4.01 5.05 30.68 0.16 -3.85 16 10 C 0.15 5.94 2.81 45.11 0.13 6.06 16 11 H 0.05 2.35 7.59 -2.38 -0.02 2.33 16 12 N -0.75 -31.47 4.40 -446.25 -1.96 -33.44 16 13 C 0.54 30.08 7.71 86.36 0.67 30.74 16 14 O -0.63 -40.93 14.69 -4.31 -0.06 -40.99 16 15 C -0.57 -30.89 9.54 24.83 0.24 -30.65 16 16 H 0.09 4.23 7.85 -2.91 -0.02 4.21 16 17 C 0.03 1.64 5.50 85.31 0.47 2.11 16 18 N -0.82 -49.36 11.83 21.84 0.26 -49.10 16 19 Si 0.99 39.46 29.56 68.60 2.03 41.49 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 23 C -0.16 -5.75 5.80 30.69 0.18 -5.57 16 24 C 0.07 2.30 6.68 72.01 0.48 2.78 16 25 O -0.38 -12.24 10.39 -148.98 -1.55 -13.79 16 26 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 27 H 0.09 1.19 7.33 -2.39 -0.02 1.18 16 28 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.22 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.39 13.93 7.05 -92.71 -0.65 13.27 16 34 H 0.27 14.93 8.29 -92.71 -0.77 14.16 16 35 H 0.05 2.23 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.05 1.68 7.75 -2.39 -0.02 1.66 16 38 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -80.69 318.03 1.99 -78.70 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.42 Total: 31.11 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.66 Total: 15.26 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -5.51 Total: -111.77 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -1.61 Total: -54.79 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -80.69 1.99 -78.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507255.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.080 kcal (2) G-P(sol) polarization free energy of solvation -80.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds