Wall clock time and date at job start Tue Mar 31 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36883 * 126.39554 * 2 1 4 4 C 1.34673 * 106.81470 * 180.25294 * 3 2 1 5 5 N 1.34126 * 108.02132 * 359.73882 * 4 3 2 6 6 C 1.30500 * 109.25241 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.64524 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.49207 * 165.05406 * 7 6 5 9 9 C 1.53098 * 109.48082 * 285.08461 * 7 6 5 10 10 C 1.53180 * 109.16075 * 177.59391 * 9 7 6 11 11 H 1.08999 * 109.54515 * 62.88494 * 10 9 7 12 12 N 1.46500 * 109.61253 * 183.10741 * 10 9 7 13 13 C 1.34782 * 119.99699 * 204.59667 * 12 10 9 14 14 O 1.21685 * 120.00138 * 0.02562 * 13 12 10 15 15 C 1.46377 * 119.99434 * 180.02562 * 13 12 10 16 16 H 1.07998 * 120.00444 * 0.02562 * 15 13 12 17 17 C 1.40047 * 119.99360 * 180.02562 * 15 13 12 18 18 N 1.30675 * 120.00642 * 359.97438 * 17 15 13 19 19 Si 1.86811 * 120.00026 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46730 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47178 * 119.99616 * 19 17 15 22 22 H 1.48493 * 109.47052 * 240.00045 * 19 17 15 23 23 C 1.53175 * 109.03606 * 303.01560 * 10 9 7 24 24 C 1.53092 * 109.16344 * 56.98567 * 23 10 9 25 25 O 1.42905 * 109.48261 * 45.02438 * 7 6 5 26 26 H 1.08994 * 109.47678 * 270.19252 * 1 2 3 27 27 H 1.09000 * 109.46985 * 30.19021 * 1 2 3 28 28 H 1.09000 * 109.46733 * 150.18444 * 1 2 3 29 29 H 1.08000 * 126.59351 * 359.97309 * 3 2 1 30 30 H 1.08003 * 125.98839 * 179.76908 * 4 3 2 31 31 H 1.08996 * 109.52270 * 57.68637 * 9 7 6 32 32 H 1.08998 * 109.51931 * 297.49559 * 9 7 6 33 33 H 0.96999 * 120.00467 * 24.60389 * 12 10 9 34 34 H 0.96997 * 120.00368 * 179.97438 * 18 17 15 35 35 H 1.09004 * 109.52714 * 297.07587 * 23 10 9 36 36 H 1.08998 * 109.52443 * 176.88852 * 23 10 9 37 37 H 1.08997 * 109.48111 * 182.40965 * 24 23 10 38 38 H 1.08999 * 109.49220 * 62.37875 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0033 6 6 2.2663 -1.0869 0.0032 7 6 1.8018 -2.5205 0.0072 8 1 0.7466 -2.5602 0.2773 9 6 1.9952 -3.1238 -1.3866 10 6 1.5773 -4.5972 -1.3591 11 1 0.5164 -4.6710 -1.1200 12 7 1.8279 -5.2039 -2.6688 13 6 1.1237 -6.2860 -3.0560 14 8 0.2796 -6.7587 -2.3179 15 6 1.3746 -6.8925 -4.3644 16 1 2.1241 -6.4733 -5.0192 17 6 0.6425 -8.0165 -4.7669 18 7 -0.2640 -8.5242 -3.9744 19 14 0.9620 -8.7903 -6.4369 20 1 2.0295 -8.0321 -7.1376 21 1 1.3929 -10.1996 -6.2552 22 1 -0.2828 -8.7536 -7.2457 23 6 2.3955 -5.3287 -0.2905 24 6 2.1867 -4.6403 1.0609 25 8 2.5653 -3.2662 0.9575 26 1 -0.3634 0.0035 1.0276 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5110 29 1 1.9613 2.1346 -0.0004 30 1 4.4368 1.2612 -0.0108 31 1 3.0437 -3.0478 -1.6741 32 1 1.3792 -2.5839 -2.1057 33 1 2.5006 -4.8271 -3.2572 34 1 -0.7713 -9.3024 -4.2534 35 1 3.4523 -5.2973 -0.5559 36 1 2.0659 -6.3656 -0.2258 37 1 2.8000 -5.1304 1.8170 38 1 1.1366 -4.7077 1.3450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642507256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:47 Heat of formation + Delta-G solvation = -22.446440 kcal Electronic energy + Delta-G solvation = -21808.182655 eV Core-core repulsion = 18458.739141 eV Total energy + Delta-G solvation = -3349.443514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18770 -39.26672 -37.10169 -34.16931 -34.05608 -32.42756 -32.07012 -30.45113 -28.70681 -27.17421 -26.34745 -24.19523 -23.42138 -21.52152 -20.50791 -19.77334 -19.38839 -17.41925 -17.15345 -16.12315 -15.71464 -15.65534 -15.36838 -14.86672 -14.42501 -14.11392 -14.06713 -13.69221 -13.48489 -13.17648 -12.92336 -12.82862 -12.52855 -12.37663 -11.96736 -11.24366 -11.16734 -11.10250 -10.94233 -10.54958 -10.45553 -10.22940 -10.06394 -9.94047 -9.69122 -9.52692 -8.87539 -8.47364 -7.63031 -7.53679 -6.20445 -4.65691 1.88246 2.54343 3.08766 3.11988 3.20578 3.25082 3.87155 4.08794 4.36429 4.50565 4.56010 4.66620 4.79924 4.86188 4.94126 5.15639 5.16361 5.21839 5.33794 5.45990 5.56629 5.60624 5.68700 5.81244 5.86979 6.01033 6.16910 6.19336 6.33638 6.57282 6.69305 6.77021 6.99202 7.31837 7.42278 7.91471 8.08451 8.10150 8.32418 9.01347 9.51821 10.57930 10.76444 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.003768 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.606245 B = 7429.426043 C = 7720.031063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.456 5.456 3 C -0.060 4.060 4 C -0.031 4.031 5 N -0.464 5.464 6 C 0.216 3.784 7 C 0.187 3.813 8 H 0.069 0.931 9 C -0.146 4.146 10 C 0.159 3.841 11 H 0.075 0.925 12 N -0.761 5.761 13 C 0.555 3.445 14 O -0.581 6.581 15 C -0.545 4.545 16 H 0.068 0.932 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.166 4.166 24 C 0.065 3.935 25 O -0.365 6.365 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.381 0.619 34 H 0.267 0.733 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 16.421 7.363 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.140 5.140 3 C -0.192 4.192 4 C -0.180 4.180 5 N -0.182 5.182 6 C -0.047 4.047 7 C 0.127 3.873 8 H 0.087 0.913 9 C -0.185 4.185 10 C 0.052 3.948 11 H 0.093 0.907 12 N -0.414 5.414 13 C 0.360 3.640 14 O -0.464 6.464 15 C -0.582 4.582 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.731 3.269 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.205 4.205 24 C -0.012 4.012 25 O -0.283 6.283 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.192 0.808 30 H 0.187 0.813 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.212 0.788 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.492 15.478 8.042 17.506 hybrid contribution -0.446 0.367 -1.266 1.391 sum 1.046 15.845 6.776 17.265 Atomic orbital electron populations 1.22127 0.76598 1.05074 1.03834 1.45246 1.07613 1.06413 1.54714 1.22689 0.91436 0.92309 1.12806 1.22386 0.96397 0.91354 1.07847 1.70280 1.18333 1.11499 1.18087 1.22702 0.85904 0.89922 1.06170 1.19881 0.93822 0.83264 0.90377 0.91344 1.22448 1.03815 0.96782 0.95490 1.20424 0.99166 0.89232 0.85964 0.90678 1.46172 1.44253 1.34227 1.16793 1.18226 0.80151 0.78053 0.87602 1.90586 1.36201 1.63321 1.56281 1.20936 1.22582 1.13509 1.01180 0.91398 1.25701 0.93565 0.96055 0.97842 1.70027 1.16845 1.18127 1.34703 0.86332 0.78882 0.79249 0.82398 1.18769 1.20148 1.20197 1.22658 1.01538 1.01469 0.94820 1.22661 0.99999 0.80708 0.97814 1.87979 1.59815 1.21559 1.58915 0.90298 0.89330 0.89113 0.80802 0.81282 0.89862 0.90916 0.78750 0.92197 0.91239 0.89903 0.88549 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.75 59.85 0.64 1.12 16 2 N -0.46 -5.18 3.15 -121.28 -0.38 -5.56 16 3 C -0.06 -0.62 11.58 -16.56 -0.19 -0.81 16 4 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 5 N -0.46 -7.46 11.25 -10.82 -0.12 -7.58 16 6 C 0.22 3.14 6.79 -155.42 -1.06 2.08 16 7 C 0.19 2.73 2.91 -27.83 -0.08 2.64 16 8 H 0.07 0.87 7.09 -51.93 -0.37 0.50 16 9 C -0.15 -2.29 4.88 -26.59 -0.13 -2.42 16 10 C 0.16 3.00 2.54 -67.75 -0.17 2.82 16 11 H 0.08 1.55 7.59 -51.93 -0.39 1.16 16 12 N -0.76 -16.83 5.08 -55.04 -0.28 -17.10 16 13 C 0.56 15.51 7.71 -12.98 -0.10 15.41 16 14 O -0.58 -18.28 14.69 5.20 0.08 -18.20 16 15 C -0.55 -15.30 9.54 -35.63 -0.34 -15.64 16 16 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 17 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 18 N -0.77 -22.79 11.83 55.55 0.66 -22.14 16 19 Si 0.91 20.06 29.56 -169.99 -5.02 15.03 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.17 -2.93 5.71 -26.59 -0.15 -3.08 16 24 C 0.07 0.96 6.84 37.20 0.25 1.22 16 25 O -0.36 -5.86 10.39 -35.23 -0.37 -6.23 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.65 7.33 -51.93 -0.38 0.27 16 29 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.38 7.62 8.58 -40.82 -0.35 7.27 16 34 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 321.87 15.07 4.85 4.85 Total: -1.00 -36.62 321.87 -7.49 -44.11 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.27 Total: 7.72 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -1.63 Total: 5.10 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.13 Total: -52.38 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.29 Total: -24.43 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.62 -7.49 -44.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.665 kcal (2) G-P(sol) polarization free energy of solvation -36.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds