Wall clock time and date at job start Tue Mar 31 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36883 * 126.39554 * 2 1 4 4 C 1.34673 * 106.81470 * 180.25294 * 3 2 1 5 5 N 1.34126 * 108.02132 * 359.73882 * 4 3 2 6 6 C 1.30500 * 109.25241 * 0.02562 * 5 4 3 7 7 C 1.50700 * 125.64524 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.49207 * 165.05406 * 7 6 5 9 9 C 1.53098 * 109.48082 * 285.08461 * 7 6 5 10 10 C 1.53180 * 109.16075 * 177.59391 * 9 7 6 11 11 H 1.08999 * 109.54515 * 62.88494 * 10 9 7 12 12 N 1.46500 * 109.61253 * 183.10741 * 10 9 7 13 13 C 1.34782 * 119.99699 * 204.59667 * 12 10 9 14 14 O 1.21685 * 120.00138 * 0.02562 * 13 12 10 15 15 C 1.46377 * 119.99434 * 180.02562 * 13 12 10 16 16 H 1.07998 * 120.00444 * 0.02562 * 15 13 12 17 17 C 1.40047 * 119.99360 * 180.02562 * 15 13 12 18 18 N 1.30675 * 120.00642 * 359.97438 * 17 15 13 19 19 Si 1.86811 * 120.00026 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46730 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47178 * 119.99616 * 19 17 15 22 22 H 1.48493 * 109.47052 * 240.00045 * 19 17 15 23 23 C 1.53175 * 109.03606 * 303.01560 * 10 9 7 24 24 C 1.53092 * 109.16344 * 56.98567 * 23 10 9 25 25 O 1.42905 * 109.48261 * 45.02438 * 7 6 5 26 26 H 1.08994 * 109.47678 * 270.19252 * 1 2 3 27 27 H 1.09000 * 109.46985 * 30.19021 * 1 2 3 28 28 H 1.09000 * 109.46733 * 150.18444 * 1 2 3 29 29 H 1.08000 * 126.59351 * 359.97309 * 3 2 1 30 30 H 1.08003 * 125.98839 * 179.76908 * 4 3 2 31 31 H 1.08996 * 109.52270 * 57.68637 * 9 7 6 32 32 H 1.08998 * 109.51931 * 297.49559 * 9 7 6 33 33 H 0.96999 * 120.00467 * 24.60389 * 12 10 9 34 34 H 0.96997 * 120.00368 * 179.97438 * 18 17 15 35 35 H 1.09004 * 109.52714 * 297.07587 * 23 10 9 36 36 H 1.08998 * 109.52443 * 176.88852 * 23 10 9 37 37 H 1.08997 * 109.48111 * 182.40965 * 24 23 10 38 38 H 1.08999 * 109.49220 * 62.37875 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5096 -0.6903 -0.0033 6 6 2.2663 -1.0869 0.0032 7 6 1.8018 -2.5205 0.0072 8 1 0.7466 -2.5602 0.2773 9 6 1.9952 -3.1238 -1.3866 10 6 1.5773 -4.5972 -1.3591 11 1 0.5164 -4.6710 -1.1200 12 7 1.8279 -5.2039 -2.6688 13 6 1.1237 -6.2860 -3.0560 14 8 0.2796 -6.7587 -2.3179 15 6 1.3746 -6.8925 -4.3644 16 1 2.1241 -6.4733 -5.0192 17 6 0.6425 -8.0165 -4.7669 18 7 -0.2640 -8.5242 -3.9744 19 14 0.9620 -8.7903 -6.4369 20 1 2.0295 -8.0321 -7.1376 21 1 1.3929 -10.1996 -6.2552 22 1 -0.2828 -8.7536 -7.2457 23 6 2.3955 -5.3287 -0.2905 24 6 2.1867 -4.6403 1.0609 25 8 2.5653 -3.2662 0.9575 26 1 -0.3634 0.0035 1.0276 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5110 29 1 1.9613 2.1346 -0.0004 30 1 4.4368 1.2612 -0.0108 31 1 3.0437 -3.0478 -1.6741 32 1 1.3792 -2.5839 -2.1057 33 1 2.5006 -4.8271 -3.2572 34 1 -0.7713 -9.3024 -4.2534 35 1 3.4523 -5.2973 -0.5559 36 1 2.0659 -6.3656 -0.2258 37 1 2.8000 -5.1304 1.8170 38 1 1.1366 -4.7077 1.3450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642507256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:47 Heat of formation + Delta-G solvation = -49.677479 kcal Electronic energy + Delta-G solvation = -21809.363482 eV Core-core repulsion = 18458.739141 eV Total energy + Delta-G solvation = -3350.624341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.09577 -40.66662 -39.01865 -35.84157 -34.95929 -34.53102 -33.25721 -32.19696 -29.76539 -28.40560 -27.85117 -25.54346 -24.76121 -22.54264 -22.01409 -21.23479 -20.73637 -19.21553 -18.24448 -17.51051 -17.22526 -16.98197 -16.55283 -16.21249 -15.98709 -15.69729 -15.31362 -14.82770 -14.54308 -14.44479 -14.33144 -14.11027 -13.77176 -13.53487 -13.39171 -13.08338 -12.82734 -12.63768 -12.50572 -12.42507 -11.99424 -11.96103 -11.51523 -10.94606 -10.91443 -10.80503 -10.57211 -9.83940 -9.49154 -9.35700 -8.29306 -6.85714 0.99167 1.39554 1.40293 1.57630 1.72513 2.12093 2.24645 2.46912 2.82908 2.99440 3.36449 3.58539 3.69010 3.86318 3.89224 3.97037 4.10232 4.11447 4.17696 4.37775 4.40005 4.47370 4.59557 4.63853 4.67165 4.76070 4.80748 4.96316 5.08804 5.23870 5.32221 5.32819 5.84042 5.88217 6.03389 6.20828 6.22012 6.28757 6.87135 7.17052 7.53033 8.48979 8.67058 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028635 B = 0.003768 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.606245 B = 7429.426043 C = 7720.031063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.453 5.453 3 C -0.036 4.036 4 C -0.063 4.063 5 N -0.507 5.507 6 C 0.185 3.815 7 C 0.189 3.811 8 H 0.087 0.913 9 C -0.128 4.128 10 C 0.158 3.842 11 H 0.055 0.945 12 N -0.751 5.751 13 C 0.542 3.458 14 O -0.626 6.626 15 C -0.575 4.575 16 H 0.084 0.916 17 C 0.031 3.969 18 N -0.819 5.819 19 Si 0.996 3.004 20 H -0.250 1.250 21 H -0.269 1.269 22 H -0.267 1.267 23 C -0.159 4.159 24 C 0.073 3.927 25 O -0.376 6.376 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.218 0.782 30 H 0.187 0.813 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.392 0.608 34 H 0.274 0.726 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.118 0.882 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 18.275 6.683 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.136 5.136 3 C -0.170 4.170 4 C -0.211 4.211 5 N -0.227 5.227 6 C -0.077 4.077 7 C 0.129 3.871 8 H 0.105 0.895 9 C -0.167 4.167 10 C 0.052 3.948 11 H 0.073 0.927 12 N -0.404 5.404 13 C 0.346 3.654 14 O -0.513 6.513 15 C -0.612 4.612 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.815 3.185 20 H -0.173 1.173 21 H -0.194 1.194 22 H -0.192 1.192 23 C -0.198 4.198 24 C -0.004 4.004 25 O -0.295 6.295 26 H 0.112 0.888 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.235 0.765 30 H 0.204 0.796 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.225 0.775 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.534 17.378 7.374 18.940 hybrid contribution -0.451 -0.089 -1.002 1.102 sum 1.083 17.289 6.373 18.458 Atomic orbital electron populations 1.22458 0.74222 1.06421 1.05309 1.45492 1.09080 1.05740 1.53270 1.23365 0.90514 0.93674 1.09425 1.22858 0.98418 0.90522 1.09300 1.70171 1.19730 1.13645 1.19118 1.22483 0.86341 0.90308 1.08544 1.19888 0.94711 0.83575 0.88898 0.89490 1.22251 1.03112 0.94283 0.97093 1.20555 0.98315 0.91381 0.84576 0.92683 1.45889 1.43387 1.32896 1.18193 1.18528 0.80089 0.79045 0.87719 1.90541 1.38246 1.65044 1.57468 1.21462 1.23459 1.14477 1.01776 0.89825 1.26911 0.92660 0.96211 1.02626 1.70176 1.18171 1.19000 1.37546 0.85002 0.79282 0.78123 0.76073 1.17299 1.19368 1.19218 1.22543 1.00852 0.99934 0.96512 1.22659 1.01247 0.80275 0.96216 1.87980 1.60527 1.21734 1.59219 0.88756 0.86485 0.89377 0.76517 0.79561 0.90779 0.90107 0.77472 0.91568 0.91445 0.92906 0.86445 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 10.75 127.77 1.37 2.02 16 2 N -0.45 -9.15 3.15 -537.62 -1.69 -10.84 16 3 C -0.04 -0.64 11.58 83.09 0.96 0.33 16 4 C -0.06 -1.48 11.87 83.52 0.99 -0.49 16 5 N -0.51 -16.00 11.25 -188.13 -2.12 -18.12 16 6 C 0.19 5.19 6.79 138.13 0.94 6.13 16 7 C 0.19 5.40 2.91 29.88 0.09 5.48 16 8 H 0.09 2.11 7.09 -2.39 -0.02 2.10 16 9 C -0.13 -4.02 4.88 30.69 0.15 -3.87 16 10 C 0.16 6.10 2.54 45.11 0.11 6.21 16 11 H 0.05 2.36 7.59 -2.39 -0.02 2.35 16 12 N -0.75 -34.09 5.08 -446.25 -2.27 -36.35 16 13 C 0.54 31.26 7.71 86.36 0.67 31.92 16 14 O -0.63 -41.11 14.69 -4.30 -0.06 -41.17 16 15 C -0.58 -32.72 9.54 24.83 0.24 -32.48 16 16 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 17 C 0.03 1.73 5.50 85.30 0.47 2.20 16 18 N -0.82 -49.79 11.83 21.84 0.26 -49.53 16 19 Si 1.00 41.02 29.56 68.60 2.03 43.05 16 20 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 23 C -0.16 -5.80 5.71 30.68 0.18 -5.62 16 24 C 0.07 2.13 6.84 72.01 0.49 2.62 16 25 O -0.38 -11.89 10.39 -148.98 -1.55 -13.43 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.09 1.07 7.33 -2.39 -0.02 1.05 16 29 H 0.22 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.39 15.91 8.58 -92.71 -0.80 15.11 16 34 H 0.27 15.05 8.29 -92.71 -0.77 14.28 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -82.48 321.87 1.53 -80.95 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.28 Total: 31.00 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.66 Total: 14.46 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -5.82 Total: -114.85 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -1.61 Total: -54.60 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -82.48 1.53 -80.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.276 kcal (2) G-P(sol) polarization free energy of solvation -82.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds