Wall clock time and date at job start Tue Mar 31 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36880 * 126.39215 * 2 1 4 4 C 1.34668 * 106.81278 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.02099 * 0.22717 * 4 3 2 6 6 C 1.30500 * 109.25886 * 359.61875 * 5 4 3 7 7 C 1.50696 * 125.65302 * 180.14226 * 6 5 4 8 8 H 1.09000 * 109.48219 * 195.29574 * 7 6 5 9 9 C 1.53097 * 109.47648 * 75.27486 * 7 6 5 10 10 C 1.53180 * 109.16250 * 182.40667 * 9 7 6 11 11 H 1.08995 * 109.54045 * 297.02642 * 10 9 7 12 12 N 1.46495 * 109.54433 * 176.84829 * 10 9 7 13 13 C 1.34767 * 120.00295 * 154.99692 * 12 10 9 14 14 O 1.21687 * 119.99980 * 0.02562 * 13 12 10 15 15 C 1.46374 * 120.00307 * 179.97438 * 13 12 10 16 16 H 1.08000 * 120.00309 * 353.94938 * 15 13 12 17 17 C 1.40053 * 120.00075 * 173.94290 * 15 13 12 18 18 N 1.30669 * 119.99951 * 6.15205 * 17 15 13 19 19 Si 1.86796 * 119.99990 * 186.15346 * 17 15 13 20 20 H 1.48505 * 109.47244 * 94.98727 * 19 17 15 21 21 H 1.48501 * 109.47066 * 214.98133 * 19 17 15 22 22 H 1.48495 * 109.47318 * 334.98378 * 19 17 15 23 23 C 1.53171 * 109.03342 * 56.98287 * 10 9 7 24 24 C 1.53096 * 109.16656 * 303.01679 * 23 10 9 25 25 O 1.42899 * 109.48142 * 315.33598 * 7 6 5 26 26 H 1.09002 * 109.47088 * 90.02518 * 1 2 3 27 27 H 1.09003 * 109.46985 * 210.02479 * 1 2 3 28 28 H 1.08999 * 109.47472 * 330.02134 * 1 2 3 29 29 H 1.07995 * 126.59358 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.98740 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.52341 * 302.31882 * 9 7 6 32 32 H 1.08999 * 109.51847 * 62.50514 * 9 7 6 33 33 H 0.97004 * 120.00269 * 335.00469 * 12 10 9 34 34 H 0.96997 * 120.00225 * 179.97438 * 18 17 15 35 35 H 1.09002 * 109.52642 * 62.92631 * 23 10 9 36 36 H 1.09000 * 109.52206 * 183.11198 * 23 10 9 37 37 H 1.08996 * 109.48124 * 177.59084 * 24 23 10 38 38 H 1.09004 * 109.47904 * 297.63202 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6506 -0.0006 5 7 3.5095 -0.6902 -0.0060 6 6 2.2663 -1.0870 -0.0006 7 6 1.8018 -2.5206 -0.0009 8 1 0.7455 -2.5605 -0.2668 9 6 2.0004 -3.1218 1.3930 10 6 1.5825 -4.5953 1.3693 11 1 0.5205 -4.6693 1.1358 12 7 1.8396 -5.1988 2.6791 13 6 1.1323 -6.2752 3.0757 14 8 0.2802 -6.7461 2.3456 15 6 1.3896 -6.8786 4.3843 16 1 2.2101 -6.5241 4.9905 17 6 0.5716 -7.9155 4.8503 18 7 -0.3442 -8.4260 4.0705 19 14 0.7899 -8.5688 6.5867 20 1 -0.1636 -7.8844 7.4966 21 1 0.5267 -10.0302 6.6024 22 1 2.1798 -8.3111 7.0414 23 6 2.3967 -5.3282 0.2987 24 6 2.1829 -4.6419 -1.0530 25 8 2.5618 -3.2676 -0.9530 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5135 29 1 1.9612 2.1345 -0.0004 30 1 4.4368 1.2612 -0.0011 31 1 3.0501 -3.0453 1.6766 32 1 1.3871 -2.5809 2.1137 33 1 2.5190 -4.8237 3.2611 34 1 -0.9105 -9.1444 4.3931 35 1 3.4545 -5.2965 0.5601 36 1 2.0670 -6.3653 0.2368 37 1 2.7934 -5.1330 -1.8107 38 1 1.1316 -4.7096 -1.3328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642507257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:49 Heat of formation + Delta-G solvation = -22.472936 kcal Electronic energy + Delta-G solvation = -21808.383734 eV Core-core repulsion = 18458.939071 eV Total energy + Delta-G solvation = -3349.444663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18720 -39.26842 -37.10415 -34.16897 -34.05733 -32.43231 -32.07145 -30.45227 -28.70861 -27.17311 -26.34800 -24.19546 -23.42280 -21.52116 -20.50819 -19.77447 -19.38962 -17.41979 -17.15446 -16.12572 -15.71396 -15.65618 -15.36263 -14.86769 -14.42861 -14.11501 -14.07241 -13.69252 -13.48779 -13.17622 -12.92405 -12.82823 -12.53091 -12.36718 -11.98112 -11.25449 -11.16873 -11.10084 -10.94066 -10.56161 -10.42694 -10.25356 -10.06995 -9.93966 -9.69104 -9.52925 -8.86609 -8.47404 -7.63031 -7.53979 -6.21335 -4.65282 1.88233 2.54385 3.08813 3.12781 3.20403 3.24071 3.87131 4.08804 4.36527 4.50559 4.55221 4.66779 4.80181 4.86273 4.94127 5.15683 5.16507 5.21581 5.33773 5.45550 5.56539 5.60476 5.68609 5.80107 5.87241 6.00915 6.16944 6.19103 6.33423 6.56967 6.69248 6.76653 6.99227 7.31679 7.42486 7.91430 8.08323 8.10190 8.32515 9.01276 9.51662 10.57627 10.76091 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.003796 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.149787 B = 7373.738806 C = 7698.058170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.456 5.456 3 C -0.060 4.060 4 C -0.031 4.031 5 N -0.464 5.464 6 C 0.216 3.784 7 C 0.187 3.813 8 H 0.069 0.931 9 C -0.146 4.146 10 C 0.159 3.841 11 H 0.076 0.924 12 N -0.760 5.760 13 C 0.556 3.444 14 O -0.581 6.581 15 C -0.546 4.546 16 H 0.068 0.932 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.166 4.166 24 C 0.065 3.935 25 O -0.365 6.365 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.175 0.825 30 H 0.170 0.830 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.381 0.619 34 H 0.268 0.732 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 16.383 -7.448 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.140 5.140 3 C -0.192 4.192 4 C -0.180 4.180 5 N -0.182 5.182 6 C -0.047 4.047 7 C 0.127 3.873 8 H 0.087 0.913 9 C -0.185 4.185 10 C 0.052 3.948 11 H 0.094 0.906 12 N -0.414 5.414 13 C 0.360 3.640 14 O -0.464 6.464 15 C -0.583 4.583 16 H 0.086 0.914 17 C -0.131 4.131 18 N -0.397 5.397 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.205 4.205 24 C -0.012 4.012 25 O -0.283 6.283 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.192 0.808 30 H 0.187 0.813 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.213 0.787 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.481 15.442 -8.130 17.514 hybrid contribution -0.499 0.443 1.311 1.471 sum 0.981 15.885 -6.819 17.314 Atomic orbital electron populations 1.22129 0.76600 1.05072 1.03835 1.45249 1.07614 1.06414 1.54710 1.22687 0.91439 0.92308 1.12799 1.22385 0.96396 0.91355 1.07852 1.70278 1.18344 1.11495 1.18079 1.22707 0.85898 0.89920 1.06177 1.19881 0.93862 0.83254 0.90351 0.91348 1.22451 1.03810 0.96801 0.95477 1.20429 0.99192 0.89256 0.85925 0.90631 1.46170 1.43607 1.34677 1.16969 1.18217 0.80241 0.78139 0.87388 1.90586 1.36009 1.63425 1.56419 1.20903 1.16180 1.19144 1.02109 0.91402 1.25693 0.93969 0.95182 0.98277 1.70021 1.15200 1.19531 1.34914 0.86374 0.79400 0.78239 0.82840 1.19841 1.20452 1.18865 1.22658 1.01548 1.01460 0.94820 1.22663 0.99984 0.80717 0.97821 1.87979 1.60051 1.21500 1.58733 0.90291 0.89117 0.89332 0.80802 0.81282 0.89869 0.90905 0.78740 0.92149 0.91235 0.89919 0.88545 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.75 59.85 0.64 1.12 16 2 N -0.46 -5.18 3.15 -121.28 -0.38 -5.56 16 3 C -0.06 -0.62 11.58 -16.56 -0.19 -0.81 16 4 C -0.03 -0.39 11.87 -17.81 -0.21 -0.60 16 5 N -0.46 -7.46 11.25 -10.82 -0.12 -7.58 16 6 C 0.22 3.14 6.79 -155.42 -1.06 2.08 16 7 C 0.19 2.73 2.92 -27.83 -0.08 2.64 16 8 H 0.07 0.87 7.08 -51.93 -0.37 0.50 16 9 C -0.15 -2.29 4.88 -26.59 -0.13 -2.42 16 10 C 0.16 2.99 2.54 -67.75 -0.17 2.82 16 11 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 12 N -0.76 -16.81 5.08 -55.05 -0.28 -17.09 16 13 C 0.56 15.53 7.71 -12.99 -0.10 15.43 16 14 O -0.58 -18.29 14.71 5.20 0.08 -18.21 16 15 C -0.55 -15.34 9.53 -35.63 -0.34 -15.68 16 16 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 17 C 0.09 2.45 5.49 -17.37 -0.10 2.36 16 18 N -0.77 -22.78 11.85 55.55 0.66 -22.12 16 19 Si 0.91 20.05 29.56 -169.99 -5.03 15.03 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.17 -2.92 5.72 -26.59 -0.15 -3.07 16 24 C 0.07 0.96 6.84 37.21 0.25 1.21 16 25 O -0.36 -5.85 10.39 -35.23 -0.37 -6.22 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.65 7.33 -51.93 -0.38 0.27 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.38 7.62 8.59 -40.82 -0.35 7.27 16 34 H 0.27 7.20 8.29 -40.82 -0.34 6.87 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -36.61 321.90 -7.49 -44.10 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.27 Total: 7.74 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.63 Total: 5.08 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.12 Total: -52.36 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.29 Total: -24.43 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.61 -7.49 -44.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.623 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds