Wall clock time and date at job start Tue Mar 31 2020 01:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36880 * 126.39215 * 2 1 4 4 C 1.34668 * 106.81278 * 180.02562 * 3 2 1 5 5 N 1.34127 * 108.02099 * 0.22717 * 4 3 2 6 6 C 1.30500 * 109.25886 * 359.61875 * 5 4 3 7 7 C 1.50696 * 125.65302 * 180.14226 * 6 5 4 8 8 H 1.09000 * 109.48219 * 195.29574 * 7 6 5 9 9 C 1.53097 * 109.47648 * 75.27486 * 7 6 5 10 10 C 1.53180 * 109.16250 * 182.40667 * 9 7 6 11 11 H 1.08995 * 109.54045 * 297.02642 * 10 9 7 12 12 N 1.46495 * 109.54433 * 176.84829 * 10 9 7 13 13 C 1.34767 * 120.00295 * 154.99692 * 12 10 9 14 14 O 1.21687 * 119.99980 * 0.02562 * 13 12 10 15 15 C 1.46374 * 120.00307 * 179.97438 * 13 12 10 16 16 H 1.08000 * 120.00309 * 353.94938 * 15 13 12 17 17 C 1.40053 * 120.00075 * 173.94290 * 15 13 12 18 18 N 1.30669 * 119.99951 * 6.15205 * 17 15 13 19 19 Si 1.86796 * 119.99990 * 186.15346 * 17 15 13 20 20 H 1.48505 * 109.47244 * 94.98727 * 19 17 15 21 21 H 1.48501 * 109.47066 * 214.98133 * 19 17 15 22 22 H 1.48495 * 109.47318 * 334.98378 * 19 17 15 23 23 C 1.53171 * 109.03342 * 56.98287 * 10 9 7 24 24 C 1.53096 * 109.16656 * 303.01679 * 23 10 9 25 25 O 1.42899 * 109.48142 * 315.33598 * 7 6 5 26 26 H 1.09002 * 109.47088 * 90.02518 * 1 2 3 27 27 H 1.09003 * 109.46985 * 210.02479 * 1 2 3 28 28 H 1.08999 * 109.47472 * 330.02134 * 1 2 3 29 29 H 1.07995 * 126.59358 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.98740 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.52341 * 302.31882 * 9 7 6 32 32 H 1.08999 * 109.51847 * 62.50514 * 9 7 6 33 33 H 0.97004 * 120.00269 * 335.00469 * 12 10 9 34 34 H 0.96997 * 120.00225 * 179.97438 * 18 17 15 35 35 H 1.09002 * 109.52642 * 62.92631 * 23 10 9 36 36 H 1.09000 * 109.52206 * 183.11198 * 23 10 9 37 37 H 1.08996 * 109.48124 * 177.59084 * 24 23 10 38 38 H 1.09004 * 109.47904 * 297.63202 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6506 -0.0006 5 7 3.5095 -0.6902 -0.0060 6 6 2.2663 -1.0870 -0.0006 7 6 1.8018 -2.5206 -0.0009 8 1 0.7455 -2.5605 -0.2668 9 6 2.0004 -3.1218 1.3930 10 6 1.5825 -4.5953 1.3693 11 1 0.5205 -4.6693 1.1358 12 7 1.8396 -5.1988 2.6791 13 6 1.1323 -6.2752 3.0757 14 8 0.2802 -6.7461 2.3456 15 6 1.3896 -6.8786 4.3843 16 1 2.2101 -6.5241 4.9905 17 6 0.5716 -7.9155 4.8503 18 7 -0.3442 -8.4260 4.0705 19 14 0.7899 -8.5688 6.5867 20 1 -0.1636 -7.8844 7.4966 21 1 0.5267 -10.0302 6.6024 22 1 2.1798 -8.3111 7.0414 23 6 2.3967 -5.3282 0.2987 24 6 2.1829 -4.6419 -1.0530 25 8 2.5618 -3.2676 -0.9530 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8901 0.5135 29 1 1.9612 2.1345 -0.0004 30 1 4.4368 1.2612 -0.0011 31 1 3.0501 -3.0453 1.6766 32 1 1.3871 -2.5809 2.1137 33 1 2.5190 -4.8237 3.2611 34 1 -0.9105 -9.1444 4.3931 35 1 3.4545 -5.2965 0.5601 36 1 2.0670 -6.3653 0.2368 37 1 2.7934 -5.1330 -1.8107 38 1 1.1316 -4.7096 -1.3328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642507257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:49 Heat of formation + Delta-G solvation = -49.687490 kcal Electronic energy + Delta-G solvation = -21809.563846 eV Core-core repulsion = 18458.939071 eV Total energy + Delta-G solvation = -3350.624775 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.09581 -40.66728 -39.02023 -35.84274 -34.95909 -34.53631 -33.25678 -32.19665 -29.76694 -28.40549 -27.85091 -25.54379 -24.76025 -22.54217 -22.01370 -21.23748 -20.73624 -19.21609 -18.24485 -17.50582 -17.22468 -16.98181 -16.55410 -16.21486 -15.99137 -15.69783 -15.31747 -14.83053 -14.53872 -14.44947 -14.31823 -14.11874 -13.77050 -13.53929 -13.39570 -13.09700 -12.82949 -12.61362 -12.49993 -12.42532 -12.02009 -11.96104 -11.51582 -10.93644 -10.91308 -10.80272 -10.57283 -9.83990 -9.49366 -9.35774 -8.30131 -6.85249 0.99094 1.40190 1.40580 1.56648 1.72486 2.12151 2.24733 2.46727 2.82884 2.99549 3.36627 3.57518 3.68987 3.85957 3.89246 3.97010 4.10317 4.11371 4.17788 4.37687 4.40027 4.47333 4.59523 4.63924 4.67073 4.76033 4.80752 4.96310 5.08770 5.23878 5.32367 5.32795 5.84015 5.88311 6.03419 6.20703 6.21962 6.28779 6.87096 7.17036 7.52916 8.48690 8.66706 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027850 B = 0.003796 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.149787 B = 7373.738806 C = 7698.058170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.453 5.453 3 C -0.036 4.036 4 C -0.063 4.063 5 N -0.507 5.507 6 C 0.185 3.815 7 C 0.189 3.811 8 H 0.087 0.913 9 C -0.128 4.128 10 C 0.158 3.842 11 H 0.055 0.945 12 N -0.750 5.750 13 C 0.542 3.458 14 O -0.627 6.627 15 C -0.577 4.577 16 H 0.084 0.916 17 C 0.032 3.968 18 N -0.819 5.819 19 Si 0.996 3.004 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.251 1.251 23 C -0.159 4.159 24 C 0.073 3.927 25 O -0.376 6.376 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.218 0.782 30 H 0.187 0.813 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.392 0.608 34 H 0.275 0.725 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 18.295 -6.734 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.136 5.136 3 C -0.170 4.170 4 C -0.211 4.211 5 N -0.227 5.227 6 C -0.077 4.077 7 C 0.129 3.871 8 H 0.105 0.895 9 C -0.167 4.167 10 C 0.052 3.948 11 H 0.073 0.927 12 N -0.403 5.403 13 C 0.347 3.653 14 O -0.514 6.514 15 C -0.613 4.613 16 H 0.102 0.898 17 C -0.184 4.184 18 N -0.449 5.449 19 Si 0.815 3.185 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.175 1.175 23 C -0.198 4.198 24 C -0.004 4.004 25 O -0.295 6.295 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.135 0.865 29 H 0.235 0.765 30 H 0.204 0.796 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.225 0.775 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.136 0.864 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.477 17.398 -7.430 18.976 hybrid contribution -0.483 -0.038 1.032 1.140 sum 0.994 17.360 -6.398 18.528 Atomic orbital electron populations 1.22459 0.74229 1.06424 1.05299 1.45495 1.09079 1.05745 1.53270 1.23363 0.90520 0.93671 1.09423 1.22858 0.98416 0.90523 1.09300 1.70169 1.19737 1.13639 1.19108 1.22489 0.86336 0.90307 1.08549 1.19886 0.94747 0.83566 0.88871 0.89509 1.22254 1.03110 0.94310 0.97075 1.20560 0.98325 0.91408 0.84555 0.92668 1.45886 1.42747 1.33348 1.18355 1.18518 0.80192 0.79136 0.87488 1.90540 1.38061 1.65149 1.57611 1.21432 1.17195 1.20033 1.02674 0.89828 1.26907 0.92995 0.94948 1.03500 1.70171 1.16460 1.20417 1.37806 0.85039 0.80043 0.77550 0.75860 1.18717 1.19689 1.17463 1.22544 1.00873 0.99942 0.96479 1.22664 1.01226 0.80279 0.96240 1.87980 1.60754 1.21688 1.59033 0.88756 0.89387 0.86484 0.76520 0.79558 0.90768 0.90132 0.77458 0.91546 0.91419 0.92869 0.86425 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 10.75 127.77 1.37 2.03 16 2 N -0.45 -9.16 3.15 -537.61 -1.69 -10.86 16 3 C -0.04 -0.64 11.58 83.09 0.96 0.33 16 4 C -0.06 -1.48 11.87 83.52 0.99 -0.49 16 5 N -0.51 -16.00 11.25 -188.14 -2.12 -18.12 16 6 C 0.19 5.19 6.79 138.13 0.94 6.13 16 7 C 0.19 5.40 2.92 29.88 0.09 5.48 16 8 H 0.09 2.11 7.08 -2.39 -0.02 2.10 16 9 C -0.13 -4.03 4.88 30.69 0.15 -3.88 16 10 C 0.16 6.09 2.54 45.11 0.11 6.20 16 11 H 0.06 2.37 7.57 -2.39 -0.02 2.36 16 12 N -0.75 -34.06 5.08 -446.29 -2.27 -36.33 16 13 C 0.54 31.28 7.71 86.36 0.67 31.95 16 14 O -0.63 -41.15 14.71 -4.31 -0.06 -41.21 16 15 C -0.58 -32.82 9.53 24.83 0.24 -32.58 16 16 H 0.08 4.32 7.85 -2.91 -0.02 4.30 16 17 C 0.03 1.77 5.49 85.31 0.47 2.24 16 18 N -0.82 -49.76 11.85 21.84 0.26 -49.50 16 19 Si 1.00 40.98 29.56 68.60 2.03 43.01 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 22 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 23 C -0.16 -5.78 5.72 30.68 0.18 -5.60 16 24 C 0.07 2.12 6.84 72.01 0.49 2.61 16 25 O -0.38 -11.87 10.39 -148.98 -1.55 -13.42 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 1.07 7.33 -2.39 -0.02 1.06 16 28 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.22 1.74 8.06 -2.91 -0.02 1.71 16 30 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.39 15.90 8.59 -92.71 -0.80 15.11 16 34 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -82.45 321.90 1.53 -80.92 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.28 Total: 31.10 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 6.66 Total: 14.42 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -5.82 Total: -114.81 kcal Atomic # 8 Polarization: -53.02 SS G_CDS: -1.61 Total: -54.63 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -82.45 1.53 -80.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642507257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.228 kcal (2) G-P(sol) polarization free energy of solvation -82.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds