Wall clock time and date at job start Tue Mar 31 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36942 * 119.99852 * 2 1 4 4 H 1.07998 * 120.00014 * 203.04229 * 3 2 1 5 5 C 1.38811 * 119.99785 * 23.04319 * 3 2 1 6 6 N 1.31617 * 120.00067 * 12.92682 * 5 3 2 7 7 Si 1.86803 * 119.99493 * 192.92482 * 5 3 2 8 8 H 1.48502 * 109.47020 * 60.00616 * 7 5 3 9 9 H 1.48501 * 109.46811 * 179.97438 * 7 5 3 10 10 H 1.48489 * 109.47592 * 299.99934 * 7 5 3 11 11 C 1.46501 * 120.00209 * 179.97438 * 2 1 3 12 12 C 1.52989 * 109.47357 * 90.00280 * 11 2 1 13 13 C 1.53004 * 109.47775 * 180.02562 * 12 11 2 14 14 N 1.46492 * 109.47441 * 180.02562 * 13 12 11 15 15 C 1.34784 * 119.99753 * 180.02562 * 14 13 12 16 16 O 1.21513 * 120.00176 * 359.97438 * 15 14 13 17 17 C 1.48155 * 119.99876 * 179.97438 * 15 14 13 18 18 C 1.39157 * 119.68866 * 180.02562 * 17 15 14 19 19 C 1.38742 * 119.18587 * 180.02562 * 18 17 15 20 20 C 1.38374 * 118.55772 * 359.73583 * 19 18 17 21 21 C 1.39240 * 119.30606 * 0.51198 * 20 19 18 22 22 O 1.35671 * 119.61964 * 179.75348 * 21 20 19 23 23 N 1.31930 * 120.76803 * 359.47525 * 21 20 19 24 24 H 1.08997 * 109.47560 * 275.12227 * 1 2 3 25 25 H 1.08994 * 109.47301 * 35.13016 * 1 2 3 26 26 H 1.09007 * 109.47202 * 155.12291 * 1 2 3 27 27 H 0.97001 * 120.00028 * 179.97438 * 6 5 3 28 28 H 1.09005 * 109.47103 * 330.00338 * 11 2 1 29 29 H 1.09009 * 109.47143 * 210.00333 * 11 2 1 30 30 H 1.09004 * 109.47370 * 60.00330 * 12 11 2 31 31 H 1.09004 * 109.47725 * 300.00207 * 12 11 2 32 32 H 1.09004 * 109.46434 * 59.99718 * 13 12 11 33 33 H 1.08999 * 109.46404 * 300.00149 * 13 12 11 34 34 H 0.97003 * 120.00289 * 359.97438 * 14 13 12 35 35 H 1.07998 * 120.40971 * 359.97438 * 18 17 15 36 36 H 1.08005 * 120.72252 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.34842 * 180.27787 * 20 19 18 38 38 H 0.96697 * 113.99719 * 269.72999 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4706 6 7 0.4116 2.2597 1.1457 7 14 2.3159 4.0074 0.1455 8 1 2.4195 4.2280 -1.3193 9 1 1.4735 5.0719 0.7475 10 1 3.6718 4.0476 0.7495 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4416 13 6 3.2171 -3.0364 -1.4411 14 7 3.4618 -3.4595 -2.8221 15 6 4.1237 -4.6076 -3.0678 16 8 4.5177 -5.2915 -2.1439 17 6 4.3707 -5.0359 -4.4645 18 6 5.0542 -6.2228 -4.7108 19 6 5.2803 -6.6136 -6.0227 20 6 4.8101 -5.8066 -7.0437 21 6 4.1381 -4.6289 -6.7270 22 8 3.6788 -3.8304 -7.7231 23 7 3.9380 -4.2832 -5.4697 24 1 -0.3634 0.0917 1.0235 25 1 -0.3633 0.8404 -0.5913 26 1 -0.3634 -0.9324 -0.4323 27 1 -0.0152 3.0662 1.4748 28 1 1.6084 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5144 30 1 3.0417 -0.9516 -1.9558 31 1 1.5002 -1.8416 -1.9556 32 1 2.6276 -3.7956 -0.9271 33 1 4.1694 -2.9061 -0.9272 34 1 3.1470 -2.9138 -3.5597 35 1 5.4051 -6.8318 -3.8908 36 1 5.8077 -7.5302 -6.2423 37 1 4.9660 -6.0853 -8.0754 38 1 4.3111 -3.1580 -8.0113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660089460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:00 Heat of formation + Delta-G solvation = -18.167253 kcal Electronic energy + Delta-G solvation = -20607.740078 eV Core-core repulsion = 17258.482124 eV Total energy + Delta-G solvation = -3349.257955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04409 -39.34322 -37.31209 -36.24311 -34.81244 -33.16641 -31.90836 -30.85111 -29.82455 -26.17941 -25.70602 -24.41191 -23.60303 -21.97767 -20.97933 -20.22699 -19.06739 -17.95936 -16.88156 -16.66605 -16.37696 -15.81766 -15.64806 -15.38829 -14.80236 -14.36591 -14.13158 -13.71163 -13.41043 -13.18145 -12.85413 -12.69772 -12.55913 -12.17357 -11.68893 -11.41364 -11.01039 -10.79345 -10.75734 -10.56541 -10.46428 -10.42934 -10.16954 -9.84690 -9.77988 -9.73343 -9.41634 -8.96236 -8.51193 -6.70624 -5.68672 -3.15788 0.23338 0.69368 2.47688 2.94582 3.20848 3.41022 3.46081 3.47138 3.50881 4.12323 4.46266 4.52108 4.53501 4.60246 4.99883 5.06109 5.25082 5.45948 5.47615 5.49808 5.63591 5.82607 5.92617 5.97137 6.12394 6.19201 6.44821 6.54414 6.78671 6.80017 6.97630 7.01608 7.26144 7.41379 7.57848 7.76755 7.83734 8.11980 8.43976 9.27641 9.91318 10.40467 11.36126 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.003000 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.978665 B = 9330.369120 C = 9933.373826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.151 4.151 13 C 0.118 3.882 14 N -0.702 5.702 15 C 0.565 3.435 16 O -0.535 6.535 17 C 0.109 3.891 18 C -0.123 4.123 19 C -0.066 4.066 20 C -0.166 4.166 21 C 0.311 3.689 22 O -0.479 6.479 23 N -0.478 5.478 24 H 0.031 0.969 25 H 0.040 0.960 26 H -0.002 1.002 27 H 0.253 0.747 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.411 0.589 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 -16.876 -16.844 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.325 5.325 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.028 3.972 12 C -0.192 4.192 13 C -0.006 4.006 14 N -0.353 5.353 15 C 0.348 3.652 16 O -0.412 6.412 17 C -0.030 4.030 18 C -0.144 4.144 19 C -0.092 4.092 20 C -0.188 4.188 21 C 0.129 3.871 22 O -0.287 6.287 23 N -0.200 5.200 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 8.559 -16.725 -15.854 24.583 hybrid contribution 0.939 0.867 -0.963 1.600 sum 9.498 -15.858 -16.816 24.989 Atomic orbital electron populations 1.20791 0.82668 0.95347 0.99459 1.43883 1.01855 1.00668 1.86142 1.19148 0.98257 0.85676 1.35486 0.91488 1.25031 0.97914 0.98545 0.98222 1.70061 1.19448 1.27272 1.38549 0.86333 0.78452 0.83838 0.77896 1.21122 1.21654 1.20926 1.20593 0.96361 0.88519 0.91760 1.22549 0.99599 0.94097 1.02964 1.21566 1.00660 0.97258 0.81082 1.46041 1.55828 1.22896 1.10494 1.17853 0.78915 0.81748 0.86651 1.90792 1.51874 1.54397 1.44119 1.21017 0.96881 0.92609 0.92479 1.22179 0.97642 0.96216 0.98377 1.21569 0.96681 0.99297 0.91605 1.22340 0.98693 0.96057 1.01690 1.19099 0.92240 0.90283 0.85438 1.84814 1.45160 1.49362 1.49324 1.67036 1.18587 1.34265 1.00124 0.95077 0.94173 0.98384 0.93725 0.94372 0.93241 0.91445 0.92099 0.91415 0.91266 0.75252 0.82845 0.83413 0.83617 0.73865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.98 59.84 0.54 4.61 16 2 N -0.60 -15.39 2.92 -181.12 -0.53 -15.92 16 3 C -0.26 -7.12 9.65 -15.06 -0.15 -7.27 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.91 10.71 55.49 0.59 -26.31 16 7 Si 0.90 22.05 29.57 -169.99 -5.03 17.03 16 8 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.16 3.19 5.64 -4.05 -0.02 3.17 16 12 C -0.15 -2.59 5.65 -26.73 -0.15 -2.74 16 13 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 14 N -0.70 -9.89 5.55 -61.15 -0.34 -10.23 16 15 C 0.56 8.14 7.81 -12.18 -0.10 8.04 16 16 O -0.53 -8.96 16.32 5.35 0.09 -8.87 16 17 C 0.11 1.31 6.75 -83.02 -0.56 0.75 16 18 C -0.12 -1.15 9.63 -39.05 -0.38 -1.53 16 19 C -0.07 -0.43 10.16 -39.34 -0.40 -0.83 16 20 C -0.17 -1.14 10.05 -39.16 -0.39 -1.54 16 21 C 0.31 2.96 7.74 -17.14 -0.13 2.82 16 22 O -0.48 -3.93 13.56 -18.71 -0.25 -4.18 16 23 N -0.48 -5.67 9.57 -9.88 -0.09 -5.76 16 24 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 25 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 26 H 0.00 -0.05 8.03 -51.92 -0.42 -0.47 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.04 0.73 8.07 -51.93 -0.42 0.32 16 29 H 0.05 1.01 8.04 -51.92 -0.42 0.60 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.41 5.47 7.80 -40.82 -0.32 5.15 16 35 H 0.15 1.32 7.63 -52.49 -0.40 0.92 16 36 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 37 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.40 1.31 9.06 45.56 0.41 1.73 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -34.23 330.52 -6.84 -41.07 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.41 Total: 1.02 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.85 Total: 7.18 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.37 Total: -58.23 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.17 Total: -13.05 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.23 -6.84 -41.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660089460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.900 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds