Wall clock time and date at job start Tue Mar 31 2020 01:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36942 * 119.99852 * 2 1 4 4 H 1.07998 * 120.00014 * 203.04229 * 3 2 1 5 5 C 1.38811 * 119.99785 * 23.04319 * 3 2 1 6 6 N 1.31617 * 120.00067 * 12.92682 * 5 3 2 7 7 Si 1.86803 * 119.99493 * 192.92482 * 5 3 2 8 8 H 1.48502 * 109.47020 * 60.00616 * 7 5 3 9 9 H 1.48501 * 109.46811 * 179.97438 * 7 5 3 10 10 H 1.48489 * 109.47592 * 299.99934 * 7 5 3 11 11 C 1.46501 * 120.00209 * 179.97438 * 2 1 3 12 12 C 1.52989 * 109.47357 * 90.00280 * 11 2 1 13 13 C 1.53004 * 109.47775 * 180.02562 * 12 11 2 14 14 N 1.46492 * 109.47441 * 180.02562 * 13 12 11 15 15 C 1.34784 * 119.99753 * 180.02562 * 14 13 12 16 16 O 1.21513 * 120.00176 * 359.97438 * 15 14 13 17 17 C 1.48155 * 119.99876 * 179.97438 * 15 14 13 18 18 C 1.39157 * 119.68866 * 180.02562 * 17 15 14 19 19 C 1.38742 * 119.18587 * 180.02562 * 18 17 15 20 20 C 1.38374 * 118.55772 * 359.73583 * 19 18 17 21 21 C 1.39240 * 119.30606 * 0.51198 * 20 19 18 22 22 O 1.35671 * 119.61964 * 179.75348 * 21 20 19 23 23 N 1.31930 * 120.76803 * 359.47525 * 21 20 19 24 24 H 1.08997 * 109.47560 * 275.12227 * 1 2 3 25 25 H 1.08994 * 109.47301 * 35.13016 * 1 2 3 26 26 H 1.09007 * 109.47202 * 155.12291 * 1 2 3 27 27 H 0.97001 * 120.00028 * 179.97438 * 6 5 3 28 28 H 1.09005 * 109.47103 * 330.00338 * 11 2 1 29 29 H 1.09009 * 109.47143 * 210.00333 * 11 2 1 30 30 H 1.09004 * 109.47370 * 60.00330 * 12 11 2 31 31 H 1.09004 * 109.47725 * 300.00207 * 12 11 2 32 32 H 1.09004 * 109.46434 * 59.99718 * 13 12 11 33 33 H 1.08999 * 109.46404 * 300.00149 * 13 12 11 34 34 H 0.97003 * 120.00289 * 359.97438 * 14 13 12 35 35 H 1.07998 * 120.40971 * 359.97438 * 18 17 15 36 36 H 1.08005 * 120.72252 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.34842 * 180.27787 * 20 19 18 38 38 H 0.96697 * 113.99719 * 269.72999 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4706 6 7 0.4116 2.2597 1.1457 7 14 2.3159 4.0074 0.1455 8 1 2.4195 4.2280 -1.3193 9 1 1.4735 5.0719 0.7475 10 1 3.6718 4.0476 0.7495 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4416 13 6 3.2171 -3.0364 -1.4411 14 7 3.4618 -3.4595 -2.8221 15 6 4.1237 -4.6076 -3.0678 16 8 4.5177 -5.2915 -2.1439 17 6 4.3707 -5.0359 -4.4645 18 6 5.0542 -6.2228 -4.7108 19 6 5.2803 -6.6136 -6.0227 20 6 4.8101 -5.8066 -7.0437 21 6 4.1381 -4.6289 -6.7270 22 8 3.6788 -3.8304 -7.7231 23 7 3.9380 -4.2832 -5.4697 24 1 -0.3634 0.0917 1.0235 25 1 -0.3633 0.8404 -0.5913 26 1 -0.3634 -0.9324 -0.4323 27 1 -0.0152 3.0662 1.4748 28 1 1.6084 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5144 30 1 3.0417 -0.9516 -1.9558 31 1 1.5002 -1.8416 -1.9556 32 1 2.6276 -3.7956 -0.9271 33 1 4.1694 -2.9061 -0.9272 34 1 3.1470 -2.9138 -3.5597 35 1 5.4051 -6.8318 -3.8908 36 1 5.8077 -7.5302 -6.2423 37 1 4.9660 -6.0853 -8.0754 38 1 4.3111 -3.1580 -8.0113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660089460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:59 Heat of formation + Delta-G solvation = -45.782922 kcal Electronic energy + Delta-G solvation = -20608.937584 eV Core-core repulsion = 17258.482124 eV Total energy + Delta-G solvation = -3350.455460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80720 -40.34262 -38.08837 -37.82905 -36.27081 -34.08229 -33.47409 -31.87033 -31.23038 -27.97805 -27.34515 -25.51644 -24.30452 -23.49216 -22.21674 -21.69161 -19.81879 -18.87639 -18.70709 -17.60197 -17.13512 -16.90373 -16.82353 -16.58843 -16.27837 -15.69297 -15.46818 -14.91346 -14.76191 -14.57168 -14.26810 -13.97428 -13.37608 -13.18484 -13.05534 -12.79334 -12.76966 -12.64487 -12.51606 -12.32310 -12.11486 -11.85420 -11.62955 -11.50175 -11.04802 -10.64626 -10.53956 -10.26447 -9.98219 -8.77786 -7.82045 -5.31909 -0.48098 0.08657 1.46765 1.49362 1.55944 1.58620 1.98690 2.46746 2.52365 2.72424 3.30837 3.40003 3.64494 3.82192 3.91143 4.03196 4.09532 4.24699 4.38225 4.46097 4.51800 4.64502 4.76780 4.85128 4.90085 4.95814 5.05645 5.23182 5.26715 5.34689 5.43052 5.49103 5.63501 5.70850 6.28720 6.33999 6.55419 6.75196 7.04102 7.15795 7.87909 8.31816 9.21065 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.003000 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.978665 B = 9330.369120 C = 9933.373826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.265 4.265 4 H 0.071 0.929 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.278 1.278 9 H -0.295 1.295 10 H -0.274 1.274 11 C 0.152 3.848 12 C -0.129 4.129 13 C 0.129 3.871 14 N -0.702 5.702 15 C 0.563 3.437 16 O -0.566 6.566 17 C 0.079 3.921 18 C -0.125 4.125 19 C -0.053 4.053 20 C -0.149 4.149 21 C 0.296 3.704 22 O -0.490 6.490 23 N -0.507 5.507 24 H 0.005 0.995 25 H 0.014 0.986 26 H 0.031 0.969 27 H 0.248 0.752 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.415 0.585 35 H 0.156 0.844 36 H 0.190 0.810 37 H 0.181 0.819 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.830 -18.295 -19.150 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.395 4.395 4 H 0.089 0.911 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.204 1.204 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.025 3.975 12 C -0.170 4.170 13 C 0.005 3.995 14 N -0.352 5.352 15 C 0.349 3.651 16 O -0.445 6.445 17 C -0.058 4.058 18 C -0.146 4.146 19 C -0.078 4.078 20 C -0.170 4.170 21 C 0.115 3.885 22 O -0.300 6.300 23 N -0.229 5.229 24 H 0.023 0.977 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.174 0.826 36 H 0.207 0.793 37 H 0.198 0.802 38 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 10.036 -18.158 -18.191 27.593 hybrid contribution 0.521 1.218 -0.348 1.370 sum 10.557 -16.940 -18.539 27.242 Atomic orbital electron populations 1.20549 0.82867 0.95928 0.97654 1.44149 1.02143 1.01782 1.86391 1.19508 0.98545 0.86829 1.34637 0.91080 1.25836 0.98683 1.02038 0.98503 1.70233 1.20893 1.27709 1.39890 0.85295 0.77689 0.79340 0.77848 1.20412 1.22078 1.20017 1.20766 0.95909 0.86934 0.93877 1.22182 0.99745 0.94799 1.00245 1.21320 1.00208 0.96059 0.81902 1.45957 1.56019 1.23195 1.10028 1.18271 0.77969 0.81113 0.87781 1.90759 1.53136 1.55192 1.45421 1.20698 0.99601 0.94306 0.91165 1.22350 0.97011 0.95222 1.00063 1.22021 0.95610 1.00223 0.89960 1.22718 0.96449 0.94331 1.03513 1.19452 0.92714 0.91474 0.84881 1.84776 1.46414 1.50107 1.48750 1.66880 1.19711 1.35199 1.01154 0.97693 0.96693 0.95005 0.94275 0.93012 0.93496 0.92417 0.92025 0.91162 0.91496 0.74830 0.82635 0.79309 0.80186 0.71701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.88 8.98 127.77 1.15 10.03 16 2 N -0.62 -31.79 2.92 -726.95 -2.12 -33.92 16 3 C -0.27 -14.79 9.65 84.03 0.81 -13.98 16 4 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 5 C -0.06 -3.18 5.10 84.86 0.43 -2.75 16 6 N -0.94 -56.82 10.71 21.65 0.23 -56.59 16 7 Si 0.97 45.64 29.57 68.60 2.03 47.67 16 8 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 9 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 C 0.15 6.14 5.64 86.38 0.49 6.63 16 12 C -0.13 -4.34 5.65 30.59 0.17 -4.17 16 13 C 0.13 3.81 5.67 86.38 0.49 4.30 16 14 N -0.70 -19.71 5.55 -465.67 -2.58 -22.30 16 15 C 0.56 16.28 7.81 86.88 0.68 16.96 16 16 O -0.57 -19.09 16.32 -3.76 -0.06 -19.15 16 17 C 0.08 1.87 6.75 41.85 0.28 2.15 16 18 C -0.13 -2.13 9.63 22.61 0.22 -1.91 16 19 C -0.05 -0.50 10.16 22.42 0.23 -0.27 16 20 C -0.15 -1.50 10.05 22.54 0.23 -1.28 16 21 C 0.30 5.06 7.74 84.92 0.66 5.72 16 22 O -0.49 -7.12 13.56 -89.88 -1.22 -8.34 16 23 N -0.51 -11.62 9.57 -298.19 -2.85 -14.47 16 24 H 0.00 0.27 7.34 -2.39 -0.02 0.25 16 25 H 0.01 0.79 7.34 -2.39 -0.02 0.77 16 26 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 27 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.05 1.95 8.07 -2.38 -0.02 1.93 16 29 H 0.05 1.91 8.04 -2.38 -0.02 1.89 16 30 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.41 11.03 7.80 -92.71 -0.72 10.31 16 35 H 0.16 2.50 7.63 -2.91 -0.02 2.47 16 36 H 0.19 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 38 H 0.42 1.99 9.06 -74.06 -0.67 1.31 16 Total: -1.00 -74.79 330.52 -1.05 -75.85 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -0.31 Total: 9.83 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 5.83 Total: 21.42 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -7.33 Total: -127.28 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -1.28 Total: -27.49 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.79 -1.05 -75.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660089460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.063 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds