Wall clock time and date at job start Tue Mar 31 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36929 * 119.99773 * 2 1 4 4 H 1.08010 * 119.99631 * 203.04292 * 3 2 1 5 5 C 1.38814 * 120.00335 * 23.04403 * 3 2 1 6 6 N 1.31607 * 119.99952 * 12.92857 * 5 3 2 7 7 Si 1.86802 * 119.99927 * 192.92805 * 5 3 2 8 8 H 1.48499 * 109.47297 * 59.99742 * 7 5 3 9 9 H 1.48498 * 109.47026 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47145 * 299.99976 * 7 5 3 11 11 C 1.46498 * 119.99844 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47147 * 90.00020 * 11 2 1 13 13 N 1.46507 * 109.46959 * 179.97438 * 12 11 2 14 14 C 1.34769 * 119.99822 * 180.02562 * 13 12 11 15 15 O 1.21610 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.47422 * 120.00120 * 179.97438 * 14 13 12 17 17 C 1.36096 * 126.45139 * 180.02562 * 16 14 13 18 18 O 1.34250 * 106.94863 * 179.97438 * 17 16 14 19 19 C 1.34054 * 108.22899 * 359.97438 * 18 17 16 20 20 C 1.50701 * 125.37683 * 179.97438 * 19 18 17 21 21 C 1.52994 * 117.50059 * 351.28275 * 20 19 18 22 22 C 1.52997 * 117.49585 * 59.94216 * 20 19 18 23 23 N 1.29931 * 109.24465 * 0.26808 * 19 18 17 24 24 H 1.08999 * 109.47725 * 275.12601 * 1 2 3 25 25 H 1.09003 * 109.47469 * 35.12638 * 1 2 3 26 26 H 1.09006 * 109.47276 * 155.12451 * 1 2 3 27 27 H 0.97001 * 120.00479 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47331 * 330.00064 * 11 2 1 29 29 H 1.08999 * 109.46932 * 210.00416 * 11 2 1 30 30 H 1.08998 * 109.46907 * 60.00362 * 12 11 2 31 31 H 1.08998 * 109.47006 * 299.99967 * 12 11 2 32 32 H 0.97002 * 119.99569 * 359.97438 * 13 12 11 33 33 H 1.08000 * 126.51904 * 0.02562 * 17 16 14 34 34 H 1.09003 * 115.54866 * 205.60692 * 20 19 18 35 35 H 1.09000 * 117.49999 * 214.99673 * 21 20 19 36 36 H 1.09003 * 117.50230 * 0.02562 * 21 20 19 37 37 H 1.08996 * 117.50272 * 359.97438 * 22 20 19 38 38 H 1.09005 * 117.49666 * 144.96730 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5386 2.3401 0.4706 6 7 0.4118 2.2597 1.1457 7 14 2.3159 4.0073 0.1455 8 1 2.4197 4.2280 -1.3194 9 1 1.4736 5.0719 0.7475 10 1 3.6719 4.0475 0.7494 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7111 -1.4418 13 7 3.1855 -2.9796 -1.4411 14 6 3.5229 -3.5633 -2.6080 15 8 3.2194 -3.0370 -3.6614 16 6 4.2611 -4.8395 -2.6075 17 6 4.6664 -5.5396 -3.7019 18 8 5.3003 -6.6347 -3.2532 19 6 5.2856 -6.6082 -1.9130 20 6 5.8908 -7.6545 -1.0130 21 6 6.3970 -8.9417 -1.6669 22 6 7.3944 -7.9086 -1.1368 23 7 4.6616 -5.5412 -1.5126 24 1 -0.3634 0.0918 1.0235 25 1 -0.3634 0.8405 -0.5913 26 1 -0.3634 -0.9324 -0.4323 27 1 -0.0154 3.0663 1.4742 28 1 1.6084 -2.0282 0.5147 29 1 3.1498 -1.1382 0.5144 30 1 3.0416 -0.9517 -1.9559 31 1 1.5000 -1.8416 -1.9555 32 1 3.4285 -3.3988 -0.6008 33 1 4.5088 -5.2658 -4.7346 34 1 5.4468 -7.7349 -0.0207 35 1 6.2861 -9.8690 -1.1049 36 1 6.2928 -9.0317 -2.7482 37 1 7.9458 -7.3194 -1.8694 38 1 7.9397 -8.1558 -0.2259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690981909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:54 Heat of formation + Delta-G solvation = 37.665196 kcal Electronic energy + Delta-G solvation = -20699.052532 eV Core-core repulsion = 17352.215654 eV Total energy + Delta-G solvation = -3346.836878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.66454 -39.28365 -37.65166 -36.05500 -35.06366 -34.11743 -31.33269 -30.50991 -28.20757 -25.84917 -24.66786 -24.50409 -22.99307 -22.72438 -21.21952 -20.65102 -19.97006 -18.15552 -17.10776 -16.88432 -16.57970 -16.06039 -15.68419 -15.10362 -14.98443 -14.68064 -13.96924 -13.68516 -13.55384 -13.17004 -12.87908 -12.49260 -12.31552 -12.10381 -11.87381 -11.18647 -11.11831 -11.10413 -11.01950 -10.86374 -10.82432 -10.60176 -10.33841 -10.09873 -9.94530 -9.85180 -9.15227 -8.68930 -8.54048 -6.77775 -5.72027 -3.20148 0.92444 1.77239 2.25699 3.16418 3.25271 3.40396 3.41714 3.46061 3.48092 3.58907 4.21134 4.35574 4.48159 4.55048 4.64023 4.85408 5.10455 5.18090 5.36621 5.40497 5.41657 5.53931 5.55387 5.65428 5.78208 5.84490 5.94749 6.28271 6.58554 6.66933 6.77933 6.89026 7.24865 7.38427 7.73071 7.76442 7.81863 8.33530 8.40571 9.23353 9.85636 10.34041 11.32862 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031263 B = 0.002870 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.399950 B = 9754.761125 C = 9891.001231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.069 0.931 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.702 5.702 14 C 0.594 3.406 15 O -0.541 6.541 16 C -0.063 4.063 17 C 0.007 3.993 18 O -0.198 6.198 19 C 0.224 3.776 20 C -0.072 4.072 21 C -0.163 4.163 22 C -0.157 4.157 23 N -0.453 5.453 24 H 0.033 0.967 25 H 0.042 0.958 26 H -0.001 1.001 27 H 0.253 0.747 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.406 0.594 33 H 0.232 0.768 34 H 0.149 0.851 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.360 -22.880 -5.255 26.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.352 5.352 14 C 0.378 3.622 15 O -0.419 6.419 16 C -0.183 4.183 17 C -0.067 4.067 18 O -0.084 6.084 19 C 0.016 3.984 20 C -0.091 4.091 21 C -0.201 4.201 22 C -0.195 4.195 23 N -0.183 5.183 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.241 0.759 33 H 0.248 0.752 34 H 0.166 0.834 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.871 -22.132 -5.262 25.213 hybrid contribution 0.463 0.723 -0.534 1.011 sum 11.335 -21.409 -5.796 24.908 Atomic orbital electron populations 1.20845 0.82294 0.95610 0.99639 1.43779 1.01958 1.00284 1.85940 1.19158 0.98378 0.85524 1.35893 0.91360 1.25030 0.97846 0.98608 0.97999 1.70058 1.19376 1.27404 1.38309 0.86306 0.78432 0.83603 0.78023 1.20987 1.21599 1.20874 1.20836 0.96885 0.89188 0.91601 1.22524 0.95635 0.82639 1.02426 1.45914 1.56559 1.24698 1.08048 1.16760 0.78801 0.81954 0.84667 1.90826 1.55661 1.64146 1.31240 1.21980 1.07353 0.99810 0.89163 1.25287 0.95619 0.84693 1.01096 1.84328 1.59791 1.40264 1.24002 1.25079 0.98834 0.95802 0.78729 1.20279 0.97529 0.93525 0.97774 1.23137 1.02221 0.92826 1.01868 1.23162 0.90152 1.02050 1.04177 1.70728 1.12999 1.04396 1.30183 0.94842 0.93919 0.98236 0.93638 0.93957 0.92810 0.91259 0.91928 0.75930 0.75186 0.83360 0.87121 0.87788 0.88086 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.98 59.85 0.54 4.57 16 2 N -0.60 -15.29 2.92 -181.12 -0.53 -15.82 16 3 C -0.26 -7.27 9.65 -15.06 -0.15 -7.41 16 4 H 0.07 1.86 7.86 -52.48 -0.41 1.45 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.74 10.71 55.49 0.59 -26.14 16 7 Si 0.91 22.20 29.57 -169.99 -5.03 17.17 16 8 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 C 0.14 2.96 5.76 -4.04 -0.02 2.94 16 12 C 0.09 1.80 6.00 -4.04 -0.02 1.77 16 13 N -0.70 -11.60 5.55 -61.38 -0.34 -11.94 16 14 C 0.59 10.03 7.81 -12.52 -0.10 9.93 16 15 O -0.54 -10.62 16.89 5.27 0.09 -10.54 16 16 C -0.06 -0.88 6.99 -83.02 -0.58 -1.46 16 17 C 0.01 0.07 11.95 29.96 0.36 0.43 16 18 O -0.20 -2.07 10.40 6.52 0.07 -2.00 16 19 C 0.22 2.40 7.80 -13.08 -0.10 2.30 16 20 C -0.07 -0.51 6.33 -91.78 -0.58 -1.09 16 21 C -0.16 -0.79 10.16 -26.70 -0.27 -1.06 16 22 C -0.16 -0.82 10.24 -26.70 -0.27 -1.09 16 23 N -0.45 -6.00 11.06 -7.65 -0.08 -6.09 16 24 H 0.03 0.90 7.34 -51.93 -0.38 0.51 16 25 H 0.04 1.14 7.34 -51.93 -0.38 0.76 16 26 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.05 1.09 8.04 -51.93 -0.42 0.68 16 30 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.41 5.97 8.20 -40.82 -0.33 5.63 16 33 H 0.23 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.54 7.94 -51.93 -0.41 0.13 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -33.45 333.24 -6.77 -40.22 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.27 Total: 0.28 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.29 Total: 9.84 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: -0.36 Total: -59.99 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.16 Total: -12.54 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.45 -6.77 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690981909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.883 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds