Wall clock time and date at job start Tue Mar 31 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36931 * 120.00340 * 2 1 4 4 H 1.08004 * 120.00266 * 174.02645 * 3 2 1 5 5 C 1.38810 * 119.99962 * 354.02650 * 3 2 1 6 6 N 1.31619 * 120.00008 * 5.17390 * 5 3 2 7 7 Si 1.86807 * 120.00162 * 185.17305 * 5 3 2 8 8 H 1.48498 * 109.46927 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46847 * 119.99865 * 7 5 3 10 10 H 1.48500 * 109.47109 * 239.99758 * 7 5 3 11 11 C 1.46500 * 119.99892 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47143 * 275.31357 * 11 2 1 13 13 H 1.08996 * 109.99834 * 55.56785 * 12 11 2 14 14 C 1.54320 * 109.88475 * 294.46723 * 12 11 2 15 15 C 1.55160 * 103.10483 * 218.30308 * 14 12 11 16 16 C 1.55381 * 101.36454 * 35.49096 * 15 14 12 17 17 N 1.47025 * 109.88243 * 176.65941 * 12 11 2 18 18 C 1.34783 * 125.64903 * 298.32442 * 17 12 11 19 19 O 1.21684 * 119.99780 * 4.94584 * 18 17 12 20 20 C 1.46718 * 119.99969 * 184.94998 * 18 17 12 21 21 C 1.36339 * 126.64375 * 179.97438 * 20 18 17 22 22 N 1.33692 * 107.45379 * 179.97438 * 21 20 18 23 23 C 1.30615 * 108.99465 * 0.02562 * 22 21 20 24 24 O 1.33658 * 109.15550 * 359.72630 * 23 22 21 25 25 H 1.08998 * 109.47313 * 184.53996 * 1 2 3 26 26 H 1.09004 * 109.47096 * 304.53310 * 1 2 3 27 27 H 1.08997 * 109.47339 * 64.52883 * 1 2 3 28 28 H 0.97002 * 120.00076 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47316 * 155.31424 * 11 2 1 30 30 H 1.08999 * 109.47433 * 35.31190 * 11 2 1 31 31 H 1.09008 * 110.71732 * 336.75208 * 14 12 11 32 32 H 1.09001 * 110.72524 * 99.84510 * 14 12 11 33 33 H 1.08997 * 111.00581 * 153.66503 * 15 14 12 34 34 H 1.09003 * 110.99813 * 277.51483 * 15 14 12 35 35 H 1.08996 * 110.34359 * 204.16543 * 16 15 14 36 36 H 1.09006 * 110.44252 * 81.91904 * 16 15 14 37 37 H 1.07994 * 126.27265 * 359.97146 * 21 20 18 38 38 H 1.08003 * 125.41939 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2253 1.1883 0.0973 5 6 1.4613 2.3847 -0.1251 6 7 0.1453 2.3894 -0.1413 7 14 2.4029 3.9916 -0.2705 8 1 3.8614 3.7164 -0.2257 9 1 2.0622 4.6502 -1.5572 10 1 2.0333 4.8855 0.8562 11 6 2.1974 -1.2687 -0.0006 12 6 2.3367 -1.7779 1.4355 13 1 1.3537 -1.8586 1.8994 14 6 3.2241 -0.8136 2.2505 15 6 4.0538 -1.7711 3.1461 16 6 4.2631 -2.9790 2.1914 17 7 3.0003 -3.0898 1.4387 18 6 2.5314 -4.2087 0.8515 19 8 1.5183 -4.1641 0.1790 20 6 3.2425 -5.4805 1.0233 21 6 2.8911 -6.6872 0.4947 22 7 3.8029 -7.5802 0.8928 23 6 4.6911 -6.9779 1.6373 24 8 4.3775 -5.6821 1.7326 25 1 -0.3634 -1.0244 0.0813 26 1 -0.3633 0.5826 0.8466 27 1 -0.3634 0.4419 -0.9277 28 1 -0.3358 3.2271 -0.2291 29 1 3.1878 -1.1164 -0.4297 30 1 1.6529 -2.0024 -0.5949 31 1 3.8762 -0.2398 1.5918 32 1 2.6124 -0.1485 2.8600 33 1 5.0059 -1.3192 3.4243 34 1 3.4894 -2.0654 4.0311 35 1 4.4441 -3.8882 2.7646 36 1 5.0940 -2.7879 1.5121 37 1 2.0333 -6.8852 -0.1308 38 1 5.5454 -7.4508 2.0989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700355193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:25 Heat of formation + Delta-G solvation = 33.816442 kcal Electronic energy + Delta-G solvation = -22267.039691 eV Core-core repulsion = 18920.035918 eV Total energy + Delta-G solvation = -3347.003773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.59707 -39.89202 -37.43452 -35.41184 -35.03259 -31.90831 -31.39056 -30.35498 -28.90743 -25.91744 -25.36132 -24.48268 -22.94026 -22.34340 -21.29507 -20.59046 -19.34096 -17.71814 -17.13948 -16.90453 -16.84273 -16.06660 -15.15900 -14.68799 -14.56328 -14.24322 -13.87232 -13.65641 -13.33632 -13.05082 -12.81210 -12.55430 -12.15772 -11.85619 -11.71364 -11.22567 -11.11085 -10.95614 -10.82238 -10.76541 -10.49084 -10.34101 -10.13899 -10.07808 -9.76310 -9.64874 -9.30802 -8.66075 -8.41028 -6.85708 -5.60628 -3.03901 0.70824 2.26661 2.28459 3.06619 3.13138 3.38839 3.44768 3.47122 3.91346 4.48422 4.52547 4.70112 4.77744 5.06321 5.10138 5.29116 5.34178 5.44360 5.57151 5.62831 5.71747 5.76437 5.92687 6.00507 6.02030 6.25906 6.29141 6.50882 6.61894 6.75636 6.91679 6.94902 7.28728 7.56974 7.70678 7.75470 7.99397 8.08926 8.41437 9.30224 9.93278 10.37768 11.38331 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.004358 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.043919 B = 6423.800744 C = 6949.564006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.605 5.605 3 C -0.242 4.242 4 H 0.074 0.926 5 C -0.005 4.005 6 N -0.916 5.916 7 Si 0.906 3.094 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.147 3.853 12 C 0.114 3.886 13 H 0.073 0.927 14 C -0.108 4.108 15 C -0.137 4.137 16 C 0.097 3.903 17 N -0.599 5.599 18 C 0.612 3.388 19 O -0.509 6.509 20 C -0.091 4.091 21 C 0.043 3.957 22 N -0.494 5.494 23 C 0.186 3.814 24 O -0.188 6.188 25 H -0.007 1.007 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.248 0.752 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.197 0.803 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.456 -15.043 7.201 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.329 5.329 3 C -0.371 4.371 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.564 5.564 7 Si 0.736 3.264 8 H -0.206 1.206 9 H -0.218 1.218 10 H -0.219 1.219 11 C 0.018 3.982 12 C 0.009 3.991 13 H 0.091 0.909 14 C -0.146 4.146 15 C -0.175 4.175 16 C -0.026 4.026 17 N -0.332 5.332 18 C 0.398 3.602 19 O -0.386 6.386 20 C -0.147 4.147 21 C -0.100 4.100 22 N -0.222 5.222 23 C -0.039 4.039 24 O -0.074 6.074 25 H 0.012 0.988 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.214 0.786 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.808 -15.477 6.664 19.498 hybrid contribution 0.613 1.485 0.220 1.621 sum 10.421 -13.993 6.883 18.756 Atomic orbital electron populations 1.21034 0.81449 0.93228 1.01746 1.44007 1.02496 1.00229 1.86133 1.19343 0.91053 0.83720 1.43008 0.90807 1.24872 0.95659 0.97811 1.01812 1.70250 1.04964 1.24574 1.56635 0.86150 0.78803 0.84054 0.77358 1.20574 1.21761 1.21876 1.21045 0.96545 0.88631 0.91971 1.22867 0.95660 0.79055 1.01497 0.90937 1.22560 0.98035 0.96419 0.97587 1.22917 1.01168 0.95643 0.97735 1.22543 0.86347 0.99425 0.94270 1.48617 1.22808 1.09739 1.52007 1.15992 0.83607 0.80090 0.80511 1.90926 1.24156 1.84017 1.39551 1.23432 0.89816 0.98525 1.02919 1.23584 0.99544 0.86970 0.99898 1.70433 1.04284 1.34092 1.13440 1.28377 1.00169 0.78039 0.97304 1.84621 1.36151 1.30108 1.56528 0.98835 0.93482 0.94457 0.94059 0.93531 0.92939 0.89968 0.89810 0.90025 0.91054 0.90392 0.91208 0.78636 0.73088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.41 8.99 59.84 0.54 4.94 16 2 N -0.61 -15.32 2.81 -181.12 -0.51 -15.83 16 3 C -0.24 -6.46 8.91 -15.06 -0.13 -6.59 16 4 H 0.07 1.89 7.09 -52.48 -0.37 1.51 16 5 C -0.01 -0.15 5.46 -17.43 -0.10 -0.25 16 6 N -0.92 -26.61 9.44 55.49 0.52 -26.08 16 7 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 C 0.15 3.16 5.04 -4.04 -0.02 3.14 16 12 C 0.11 2.07 3.16 -66.95 -0.21 1.85 16 13 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 14 C -0.11 -1.74 5.71 -24.90 -0.14 -1.88 16 15 C -0.14 -1.61 7.12 -24.32 -0.17 -1.78 16 16 C 0.10 1.17 6.36 -2.27 -0.01 1.15 16 17 N -0.60 -9.36 3.07 -164.23 -0.50 -9.86 16 18 C 0.61 10.00 7.64 -12.83 -0.10 9.91 16 19 O -0.51 -9.96 15.70 5.20 0.08 -9.87 16 20 C -0.09 -1.22 6.97 -36.84 -0.26 -1.47 16 21 C 0.04 0.53 11.66 -17.43 -0.20 0.32 16 22 N -0.49 -5.58 11.26 -14.67 -0.17 -5.74 16 23 C 0.19 1.53 13.21 52.25 0.69 2.22 16 24 O -0.19 -1.99 7.98 4.43 0.04 -1.95 16 25 H -0.01 -0.17 7.90 -51.93 -0.41 -0.58 16 26 H 0.05 1.30 6.96 -51.93 -0.36 0.94 16 27 H 0.04 1.05 7.12 -51.93 -0.37 0.68 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 0.99 7.91 -51.93 -0.41 0.58 16 30 H 0.05 1.20 6.53 -51.93 -0.34 0.86 16 31 H 0.08 1.42 6.77 -51.92 -0.35 1.07 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.82 5.97 -51.93 -0.31 0.51 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.20 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.25 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -32.38 312.75 -5.99 -38.37 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -5.02 Total: -1.96 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -0.12 Total: 11.57 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.65 Total: -57.52 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.12 Total: -11.83 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.38 -5.99 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700355193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.184 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds