Wall clock time and date at job start Tue Mar 31 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36931 * 120.00340 * 2 1 4 4 H 1.08004 * 120.00266 * 174.02645 * 3 2 1 5 5 C 1.38810 * 119.99962 * 354.02650 * 3 2 1 6 6 N 1.31619 * 120.00008 * 5.17390 * 5 3 2 7 7 Si 1.86807 * 120.00162 * 185.17305 * 5 3 2 8 8 H 1.48498 * 109.46927 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.46847 * 119.99865 * 7 5 3 10 10 H 1.48500 * 109.47109 * 239.99758 * 7 5 3 11 11 C 1.46500 * 119.99892 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47143 * 275.31357 * 11 2 1 13 13 H 1.08996 * 109.99834 * 55.56785 * 12 11 2 14 14 C 1.54320 * 109.88475 * 294.46723 * 12 11 2 15 15 C 1.55160 * 103.10483 * 218.30308 * 14 12 11 16 16 C 1.55381 * 101.36454 * 35.49096 * 15 14 12 17 17 N 1.47025 * 109.88243 * 176.65941 * 12 11 2 18 18 C 1.34783 * 125.64903 * 298.32442 * 17 12 11 19 19 O 1.21684 * 119.99780 * 4.94584 * 18 17 12 20 20 C 1.46718 * 119.99969 * 184.94998 * 18 17 12 21 21 C 1.36339 * 126.64375 * 179.97438 * 20 18 17 22 22 N 1.33692 * 107.45379 * 179.97438 * 21 20 18 23 23 C 1.30615 * 108.99465 * 0.02562 * 22 21 20 24 24 O 1.33658 * 109.15550 * 359.72630 * 23 22 21 25 25 H 1.08998 * 109.47313 * 184.53996 * 1 2 3 26 26 H 1.09004 * 109.47096 * 304.53310 * 1 2 3 27 27 H 1.08997 * 109.47339 * 64.52883 * 1 2 3 28 28 H 0.97002 * 120.00076 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47316 * 155.31424 * 11 2 1 30 30 H 1.08999 * 109.47433 * 35.31190 * 11 2 1 31 31 H 1.09008 * 110.71732 * 336.75208 * 14 12 11 32 32 H 1.09001 * 110.72524 * 99.84510 * 14 12 11 33 33 H 1.08997 * 111.00581 * 153.66503 * 15 14 12 34 34 H 1.09003 * 110.99813 * 277.51483 * 15 14 12 35 35 H 1.08996 * 110.34359 * 204.16543 * 16 15 14 36 36 H 1.09006 * 110.44252 * 81.91904 * 16 15 14 37 37 H 1.07994 * 126.27265 * 359.97146 * 21 20 18 38 38 H 1.08003 * 125.41939 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2253 1.1883 0.0973 5 6 1.4613 2.3847 -0.1251 6 7 0.1453 2.3894 -0.1413 7 14 2.4029 3.9916 -0.2705 8 1 3.8614 3.7164 -0.2257 9 1 2.0622 4.6502 -1.5572 10 1 2.0333 4.8855 0.8562 11 6 2.1974 -1.2687 -0.0006 12 6 2.3367 -1.7779 1.4355 13 1 1.3537 -1.8586 1.8994 14 6 3.2241 -0.8136 2.2505 15 6 4.0538 -1.7711 3.1461 16 6 4.2631 -2.9790 2.1914 17 7 3.0003 -3.0898 1.4387 18 6 2.5314 -4.2087 0.8515 19 8 1.5183 -4.1641 0.1790 20 6 3.2425 -5.4805 1.0233 21 6 2.8911 -6.6872 0.4947 22 7 3.8029 -7.5802 0.8928 23 6 4.6911 -6.9779 1.6373 24 8 4.3775 -5.6821 1.7326 25 1 -0.3634 -1.0244 0.0813 26 1 -0.3633 0.5826 0.8466 27 1 -0.3634 0.4419 -0.9277 28 1 -0.3358 3.2271 -0.2291 29 1 3.1878 -1.1164 -0.4297 30 1 1.6529 -2.0024 -0.5949 31 1 3.8762 -0.2398 1.5918 32 1 2.6124 -0.1485 2.8600 33 1 5.0059 -1.3192 3.4243 34 1 3.4894 -2.0654 4.0311 35 1 4.4441 -3.8882 2.7646 36 1 5.0940 -2.7879 1.5121 37 1 2.0333 -6.8852 -0.1308 38 1 5.5454 -7.4508 2.0989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700355193.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:25 Heat of formation + Delta-G solvation = 10.185711 kcal Electronic energy + Delta-G solvation = -22268.064396 eV Core-core repulsion = 18920.035918 eV Total energy + Delta-G solvation = -3348.028478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.43748 -41.17820 -38.79725 -37.22083 -35.94269 -33.58704 -32.81611 -31.40362 -30.42408 -28.04164 -26.83366 -25.73438 -23.77582 -23.52795 -22.89255 -21.86387 -20.64999 -18.90918 -18.71514 -18.06446 -17.85235 -17.38226 -16.77543 -16.25034 -15.54145 -15.41686 -15.32175 -15.20810 -14.68407 -14.58586 -14.27620 -13.86080 -13.69809 -13.47984 -12.88442 -12.78440 -12.69301 -12.55865 -12.29432 -12.16951 -11.98488 -11.91829 -11.80844 -11.61468 -11.52375 -11.25413 -10.65852 -10.28433 -9.82257 -8.90247 -7.71592 -5.17405 -0.21853 1.32880 1.43429 1.48772 1.50457 1.59987 1.95388 2.00284 2.53779 3.25642 3.37730 3.47790 3.59241 3.80383 3.87633 3.90024 4.02985 4.26756 4.39906 4.43090 4.49433 4.54998 4.72365 4.78486 4.88307 4.91657 5.06384 5.07545 5.12992 5.25529 5.37557 5.40027 5.54274 5.61272 5.81203 6.28369 6.31691 6.52175 6.84960 7.17639 7.87536 8.30672 9.27814 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.004358 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.043919 B = 6423.800744 C = 6949.564006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.619 5.619 3 C -0.241 4.241 4 H 0.087 0.913 5 C -0.065 4.065 6 N -0.951 5.951 7 Si 0.973 3.027 8 H -0.261 1.261 9 H -0.298 1.298 10 H -0.293 1.293 11 C 0.152 3.848 12 C 0.124 3.876 13 H 0.047 0.953 14 C -0.106 4.106 15 C -0.120 4.120 16 C 0.096 3.904 17 N -0.601 5.601 18 C 0.609 3.391 19 O -0.557 6.557 20 C -0.117 4.117 21 C 0.050 3.950 22 N -0.526 5.526 23 C 0.226 3.774 24 O -0.186 6.186 25 H 0.005 0.995 26 H 0.026 0.974 27 H 0.009 0.991 28 H 0.243 0.757 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.196 0.804 38 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.990 -16.439 8.808 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.343 5.343 3 C -0.371 4.371 4 H 0.105 0.895 5 C -0.257 4.257 6 N -0.600 5.600 7 Si 0.802 3.198 8 H -0.185 1.185 9 H -0.226 1.226 10 H -0.220 1.220 11 C 0.025 3.975 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.144 4.144 15 C -0.158 4.158 16 C -0.025 4.025 17 N -0.333 5.333 18 C 0.397 3.603 19 O -0.437 6.437 20 C -0.172 4.172 21 C -0.092 4.092 22 N -0.253 5.253 23 C 0.002 3.998 24 O -0.072 6.072 25 H 0.023 0.977 26 H 0.044 0.956 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.213 0.787 38 H 0.326 0.674 Dipole moment (debyes) X Y Z Total from point charges 13.403 -16.920 8.294 23.124 hybrid contribution -0.404 1.725 -0.274 1.793 sum 12.999 -15.195 8.020 21.544 Atomic orbital electron populations 1.20645 0.82375 0.93062 0.99301 1.44173 1.02253 1.01417 1.86499 1.19707 0.91688 0.84102 1.41567 0.89531 1.25692 0.96515 1.01151 1.02378 1.70450 1.06504 1.24847 1.58244 0.85089 0.78518 0.79738 0.76465 1.18535 1.22590 1.22042 1.21043 0.95684 0.86696 0.94087 1.22346 0.95699 0.81238 0.98862 0.93492 1.22432 0.97794 0.96391 0.97758 1.22911 1.01831 0.94061 0.96958 1.22790 0.84698 1.00635 0.94359 1.48619 1.23863 1.08488 1.52338 1.16356 0.83242 0.81095 0.79575 1.90891 1.26286 1.85017 1.41544 1.22654 0.91652 0.97135 1.05763 1.23709 0.99558 0.87025 0.98930 1.70503 1.05214 1.34275 1.15358 1.29721 0.99499 0.76708 0.93917 1.84597 1.35057 1.31332 1.56245 0.97677 0.95595 0.97262 0.94748 0.93201 0.94834 0.90993 0.91476 0.86922 0.90112 0.88033 0.90008 0.78702 0.67433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.42 8.99 127.77 1.15 11.57 16 2 N -0.62 -32.29 2.81 -726.95 -2.04 -34.34 16 3 C -0.24 -12.99 8.91 84.03 0.75 -12.24 16 4 H 0.09 4.36 7.09 -2.91 -0.02 4.34 16 5 C -0.06 -3.63 5.46 84.86 0.46 -3.17 16 6 N -0.95 -57.03 9.44 21.65 0.20 -56.82 16 7 Si 0.97 44.87 29.56 68.60 2.03 46.90 16 8 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 9 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 C 0.15 6.73 5.04 86.38 0.44 7.16 16 12 C 0.12 4.56 3.16 45.34 0.14 4.70 16 13 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 14 C -0.11 -3.30 5.71 31.78 0.18 -3.11 16 15 C -0.12 -2.44 7.12 32.15 0.23 -2.21 16 16 C 0.10 2.02 6.36 87.02 0.55 2.57 16 17 N -0.60 -18.34 3.07 -791.73 -2.43 -20.77 16 18 C 0.61 19.96 7.64 86.46 0.66 20.62 16 19 O -0.56 -22.72 15.70 -4.30 -0.07 -22.79 16 20 C -0.12 -2.93 6.97 24.04 0.17 -2.77 16 21 C 0.05 1.19 11.66 83.97 0.98 2.17 16 22 N -0.53 -10.36 11.26 -315.11 -3.55 -13.91 16 23 C 0.23 2.65 13.21 130.42 1.72 4.37 16 24 O -0.19 -3.23 7.98 -7.08 -0.06 -3.29 16 25 H 0.00 0.24 7.90 -2.39 -0.02 0.22 16 26 H 0.03 1.50 6.96 -2.39 -0.02 1.48 16 27 H 0.01 0.53 7.12 -2.39 -0.02 0.52 16 28 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.05 2.13 7.91 -2.39 -0.02 2.11 16 30 H 0.03 1.60 6.53 -2.39 -0.02 1.58 16 31 H 0.07 2.39 6.77 -2.38 -0.02 2.38 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.70 5.97 -2.39 -0.01 1.68 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 37 H 0.20 4.42 8.06 -2.91 -0.02 4.39 16 38 H 0.31 -0.55 8.06 -2.91 -0.02 -0.57 16 Total: -1.00 -73.97 312.75 2.59 -71.38 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.07 Total: 3.97 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 7.43 Total: 29.66 kcal Atomic # 7 Polarization: -118.02 SS G_CDS: -7.81 Total: -125.84 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.12 Total: -26.08 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.97 2.59 -71.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700355193.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.568 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds