Wall clock time and date at job start Tue Mar 31 2020 01:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99643 * 2 1 4 4 H 1.07999 * 119.99734 * 154.48891 * 3 2 1 5 5 C 1.38815 * 119.99996 * 334.47864 * 3 2 1 6 6 N 1.31616 * 119.99645 * 353.31003 * 5 3 2 7 7 Si 1.86795 * 120.00024 * 173.58856 * 5 3 2 8 8 H 1.48502 * 109.47096 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47475 * 120.00087 * 7 5 3 10 10 H 1.48502 * 109.47131 * 240.00048 * 7 5 3 11 11 C 1.46494 * 120.00225 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47375 * 264.49216 * 11 2 1 13 13 H 1.09008 * 109.87061 * 304.66400 * 12 11 2 14 14 C 1.54325 * 109.88365 * 65.68205 * 12 11 2 15 15 C 1.55157 * 102.94157 * 141.61553 * 14 12 11 16 16 C 1.54913 * 101.57899 * 324.49799 * 15 14 12 17 17 N 1.47019 * 109.88279 * 183.49261 * 12 11 2 18 18 C 1.34777 * 125.64884 * 61.62106 * 17 12 11 19 19 O 1.21684 * 120.00478 * 4.92121 * 18 17 12 20 20 C 1.46726 * 120.00124 * 184.92494 * 18 17 12 21 21 C 1.36338 * 126.64508 * 179.71162 * 20 18 17 22 22 N 1.33688 * 107.45254 * 179.83666 * 21 20 18 23 23 C 1.30614 * 108.99727 * 0.43356 * 22 21 20 24 24 O 1.33667 * 109.15477 * 359.72468 * 23 22 21 25 25 H 1.09000 * 109.47029 * 94.27634 * 1 2 3 26 26 H 1.09000 * 109.47252 * 214.27294 * 1 2 3 27 27 H 1.08998 * 109.47472 * 334.27583 * 1 2 3 28 28 H 0.97003 * 119.99828 * 179.97438 * 6 5 3 29 29 H 1.09007 * 109.46932 * 24.48746 * 11 2 1 30 30 H 1.09000 * 109.47205 * 144.48561 * 11 2 1 31 31 H 1.08999 * 110.71894 * 259.97012 * 14 12 11 32 32 H 1.08993 * 110.71823 * 23.25037 * 14 12 11 33 33 H 1.08994 * 111.00808 * 82.56600 * 15 14 12 34 34 H 1.09003 * 111.00512 * 206.42575 * 15 14 12 35 35 H 1.09005 * 110.36592 * 155.85041 * 16 15 14 36 36 H 1.09004 * 110.36842 * 278.05827 * 16 15 14 37 37 H 1.08004 * 126.27498 * 359.97438 * 21 20 18 38 38 H 1.08004 * 125.42504 * 179.75282 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1506 1.2316 0.4028 5 6 1.5571 2.3295 -0.5180 6 7 0.3932 2.2492 -1.1272 7 14 2.4152 3.9808 -0.3571 8 1 3.7043 3.8012 0.3578 9 1 2.6730 4.5385 -1.7091 10 1 1.5507 4.9155 0.4073 11 6 2.1975 -1.2687 0.0006 12 6 2.5725 -1.6405 1.4365 13 1 3.1314 -0.8254 1.8964 14 6 1.2959 -1.9286 2.2545 15 6 1.7183 -3.1247 3.1480 16 6 2.6567 -3.9078 2.1961 17 7 3.3799 -2.8691 1.4403 18 6 4.5821 -3.0208 0.8502 19 8 5.1277 -2.0673 0.3268 20 6 5.2331 -4.3357 0.8387 21 6 6.4381 -4.6422 0.2795 22 7 6.6609 -5.9427 0.4949 23 6 5.6480 -6.4449 1.1489 24 8 4.7509 -5.4804 1.3763 25 1 -0.3633 -0.0766 -1.0248 26 1 -0.3634 -0.8492 0.5787 27 1 -0.3634 0.9258 0.4460 28 1 -0.0211 3.0483 -1.4888 29 1 1.5692 -2.0512 -0.4251 30 1 3.1036 -1.1653 -0.5965 31 1 1.0268 -1.0671 2.8655 32 1 0.4725 -2.2096 1.5980 33 1 2.2563 -2.7814 4.0316 34 1 0.8544 -3.7274 3.4281 35 1 3.3563 -4.5164 2.7691 36 1 2.0746 -4.5348 1.5207 37 1 7.0937 -3.9591 -0.2402 38 1 5.5508 -7.4754 1.4574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700355194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:27 Heat of formation + Delta-G solvation = 1.973123 kcal Electronic energy + Delta-G solvation = -22256.319444 eV Core-core repulsion = 18907.934841 eV Total energy + Delta-G solvation = -3348.384603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.44208 -41.18489 -38.82734 -37.17849 -35.94742 -33.66351 -32.81170 -31.45154 -30.45889 -28.03695 -26.87518 -25.74756 -23.77076 -23.55303 -22.77793 -22.00476 -20.68847 -18.88440 -18.58240 -18.12382 -17.82386 -17.40921 -16.78169 -16.40139 -15.61530 -15.33968 -15.31773 -15.15307 -14.85868 -14.69940 -14.22311 -13.94630 -13.75092 -13.25509 -13.05555 -12.82392 -12.61245 -12.56960 -12.38418 -12.20760 -12.10092 -11.96495 -11.85889 -11.62587 -11.51764 -11.31356 -10.65587 -10.29352 -9.80356 -8.71998 -7.87498 -5.37327 -0.22573 1.32315 1.41995 1.42725 1.44162 1.54957 1.94997 2.00238 2.48799 3.25066 3.27740 3.47718 3.60232 3.76780 3.86155 3.89927 4.02571 4.28434 4.36969 4.42604 4.46587 4.54620 4.70263 4.85119 4.89074 4.92727 5.05047 5.08237 5.12739 5.23831 5.31248 5.40198 5.44076 5.58979 5.72413 6.27884 6.35087 6.51662 6.85879 7.14873 7.83366 8.26460 9.16540 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024412 B = 0.004695 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.690357 B = 5962.227157 C = 6688.194146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.610 5.610 3 C -0.260 4.260 4 H 0.055 0.945 5 C -0.046 4.046 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.275 1.275 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.151 3.849 12 C 0.124 3.876 13 H 0.044 0.956 14 C -0.110 4.110 15 C -0.119 4.119 16 C 0.097 3.903 17 N -0.602 5.602 18 C 0.607 3.393 19 O -0.559 6.559 20 C -0.116 4.116 21 C 0.048 3.952 22 N -0.526 5.526 23 C 0.227 3.773 24 O -0.184 6.184 25 H -0.012 1.012 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.250 0.750 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.194 0.806 38 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.763 -20.909 10.540 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.334 5.334 3 C -0.391 4.391 4 H 0.073 0.927 5 C -0.241 4.241 6 N -0.583 5.583 7 Si 0.795 3.205 8 H -0.199 1.199 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.024 3.976 12 C 0.019 3.981 13 H 0.062 0.938 14 C -0.149 4.149 15 C -0.156 4.156 16 C -0.024 4.024 17 N -0.334 5.334 18 C 0.395 3.605 19 O -0.440 6.440 20 C -0.171 4.171 21 C -0.094 4.094 22 N -0.253 5.253 23 C 0.003 3.997 24 O -0.071 6.071 25 H 0.007 0.993 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.210 0.790 38 H 0.327 0.673 Dipole moment (debyes) X Y Z Total from point charges 4.458 -20.648 10.014 23.377 hybrid contribution 0.009 1.787 -0.342 1.820 sum 4.467 -18.861 9.673 21.662 Atomic orbital electron populations 1.20662 0.81877 0.97804 0.96366 1.43957 1.02332 1.00779 1.86337 1.19397 0.99207 0.87487 1.32968 0.92714 1.25772 0.98298 1.01854 0.98202 1.70208 1.18290 1.28175 1.41668 0.85209 0.78118 0.80071 0.77101 1.19945 1.21743 1.20799 1.20972 0.94814 0.87750 0.94081 1.22264 0.92057 0.85232 0.98538 0.93752 1.22573 0.94908 0.99515 0.97857 1.22828 1.00061 0.95875 0.96871 1.22691 0.95415 0.90021 0.94257 1.48603 1.17385 1.15330 1.52077 1.16383 0.80255 0.85032 0.78815 1.90921 1.64975 1.39854 1.48216 1.22632 0.98601 0.86743 1.09148 1.23685 0.94503 0.92878 0.98354 1.70494 1.28043 1.08232 1.18574 1.29734 0.80961 0.96839 0.92214 1.84585 1.45115 1.16867 1.60488 0.99342 0.94473 0.94531 0.94057 0.93158 0.96228 0.90682 0.90173 0.90279 0.86386 0.88574 0.89682 0.78952 0.67277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.75 8.70 127.77 1.11 9.86 16 2 N -0.61 -32.01 2.78 -726.94 -2.02 -34.03 16 3 C -0.26 -15.23 9.65 84.03 0.81 -14.42 16 4 H 0.06 3.29 7.84 -2.91 -0.02 3.27 16 5 C -0.05 -2.70 5.17 84.86 0.44 -2.26 16 6 N -0.94 -56.59 10.58 21.65 0.23 -56.36 16 7 Si 0.97 47.28 29.56 68.60 2.03 49.31 16 8 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 9 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 10 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 11 C 0.15 6.82 5.11 86.38 0.44 7.26 16 12 C 0.12 4.58 3.07 45.34 0.14 4.72 16 13 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 14 C -0.11 -3.08 5.62 31.78 0.18 -2.90 16 15 C -0.12 -2.15 7.09 31.99 0.23 -1.93 16 16 C 0.10 1.95 6.03 86.86 0.52 2.47 16 17 N -0.60 -18.69 3.06 -792.65 -2.43 -21.12 16 18 C 0.61 20.95 7.55 86.46 0.65 21.61 16 19 O -0.56 -24.59 16.07 -4.30 -0.07 -24.66 16 20 C -0.12 -3.06 6.95 24.05 0.17 -2.89 16 21 C 0.05 1.21 11.66 83.97 0.98 2.19 16 22 N -0.53 -10.87 11.26 -315.09 -3.55 -14.41 16 23 C 0.23 2.79 13.21 130.42 1.72 4.51 16 24 O -0.18 -3.31 8.21 -7.15 -0.06 -3.37 16 25 H -0.01 -0.64 7.83 -2.39 -0.02 -0.66 16 26 H 0.04 1.49 5.99 -2.39 -0.01 1.47 16 27 H 0.04 1.96 6.69 -2.39 -0.02 1.95 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.05 2.09 7.95 -2.38 -0.02 2.07 16 30 H 0.02 1.01 6.86 -2.39 -0.02 0.99 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 2.21 6.19 -2.39 -0.01 2.20 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.10 1.57 6.56 -2.38 -0.02 1.56 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.31 -0.47 8.06 -2.91 -0.02 -0.49 16 Total: -1.00 -78.34 313.67 2.60 -75.75 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: 1.07 Total: 0.67 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 7.39 Total: 28.22 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -7.76 Total: -125.92 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.13 Total: -28.03 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -78.34 2.60 -75.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700355194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.720 kcal (2) G-P(sol) polarization free energy of solvation -78.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds