Wall clock time and date at job start Tue Mar 31 2020 01:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46498 * 120.00199 * 2 1 4 4 C 1.53005 * 109.46924 * 274.61911 * 3 2 1 5 5 H 1.08994 * 112.73844 * 316.06081 * 4 3 2 6 6 C 1.53499 * 113.46357 * 86.88744 * 4 3 2 7 7 C 1.53505 * 83.33837 * 140.84475 * 6 4 3 8 8 N 1.47063 * 87.98923 * 333.92874 * 7 6 4 9 9 C 1.36934 * 136.05911 * 207.15724 * 8 7 6 10 10 H 1.08001 * 119.99958 * 184.79027 * 9 8 7 11 11 C 1.38808 * 119.99800 * 4.78397 * 9 8 7 12 12 N 1.31612 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99858 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47028 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47403 * 120.00040 * 13 11 9 16 16 H 1.48502 * 109.47030 * 240.00204 * 13 11 9 17 17 C 1.34785 * 119.99995 * 180.02562 * 2 1 3 18 18 O 1.21276 * 119.99760 * 174.97688 * 17 2 1 19 19 C 1.50699 * 119.99874 * 354.98210 * 17 2 1 20 20 C 1.50703 * 109.47148 * 179.97438 * 19 17 2 21 21 C 1.41381 * 128.00519 * 269.68227 * 20 19 17 22 22 N 1.30175 * 106.38975 * 179.89309 * 21 20 19 23 23 O 1.20913 * 111.60792 * 0.38925 * 22 21 20 24 24 C 1.34039 * 111.56792 * 359.74191 * 23 22 21 25 25 H 1.09001 * 109.47546 * 90.00148 * 1 2 3 26 26 H 1.09011 * 109.47386 * 209.99962 * 1 2 3 27 27 H 1.09002 * 109.47092 * 329.99477 * 1 2 3 28 28 H 1.09001 * 109.46830 * 154.61869 * 3 2 1 29 29 H 1.09003 * 109.47204 * 34.61643 * 3 2 1 30 30 H 1.08996 * 114.20538 * 254.42936 * 6 4 3 31 31 H 1.08997 * 114.20987 * 27.25976 * 6 4 3 32 32 H 1.09003 * 113.46294 * 219.14346 * 7 6 4 33 33 H 1.09002 * 113.52098 * 88.72599 * 7 6 4 34 34 H 0.97003 * 120.00299 * 180.02562 * 12 11 9 35 35 H 1.08999 * 109.47044 * 300.00004 * 19 17 2 36 36 H 1.09005 * 109.47263 * 59.99800 * 19 17 2 37 37 H 1.08003 * 126.80144 * 0.02587 * 21 20 19 38 38 H 1.08004 * 126.77763 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3519 1.7684 -1.4379 5 1 2.6384 0.9771 -2.1304 6 6 1.1621 2.6074 -1.9244 7 6 2.2583 3.4486 -2.5930 8 7 3.1835 2.9761 -1.5520 9 6 4.3190 3.4516 -0.9523 10 1 4.8532 2.8367 -0.2432 11 6 4.7834 4.7240 -1.2559 12 7 4.1321 5.4735 -2.1198 13 14 6.3328 5.3724 -0.4384 14 1 6.8732 4.3427 0.4852 15 1 7.3466 5.6859 -1.4772 16 1 6.0106 6.6039 0.3264 17 6 2.1389 -1.1673 -0.0005 18 8 3.3481 -1.1692 -0.0925 19 6 1.3897 -2.4699 0.1130 20 6 2.3680 -3.6159 0.0878 21 6 2.8436 -4.3299 -1.0360 22 7 3.6695 -5.2263 -0.5790 23 8 3.7618 -5.1739 0.6255 24 6 2.9907 -4.2041 1.1370 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8901 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 3.1832 1.1190 0.4405 29 1 1.6467 2.0063 0.5838 30 1 0.5067 2.0895 -2.6246 31 1 0.6247 3.1241 -1.1293 32 1 2.0687 4.5211 -2.5509 33 1 2.5198 3.1060 -3.5942 34 1 4.4569 6.3625 -2.3323 35 1 0.8323 -2.4880 1.0496 36 1 0.6974 -2.5651 -0.7236 37 1 2.5764 -4.1630 -2.0690 38 1 2.8862 -3.9436 2.1799 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707047927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:40 Heat of formation + Delta-G solvation = 95.626258 kcal Electronic energy + Delta-G solvation = -21646.456163 eV Core-core repulsion = 18302.132665 eV Total energy + Delta-G solvation = -3344.323498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.01350 -39.85393 -38.02387 -35.28389 -34.67625 -32.29234 -32.12341 -29.77978 -27.96648 -27.85028 -26.12208 -23.44342 -23.16620 -22.57420 -21.46787 -19.30732 -19.01499 -17.95909 -17.66105 -16.92821 -16.70461 -16.01284 -15.63765 -14.93513 -14.74571 -14.12262 -13.89216 -13.42192 -13.32010 -13.17499 -13.00994 -12.59996 -12.51301 -12.20462 -11.81812 -11.53318 -11.33664 -11.08943 -10.86234 -10.74572 -10.44717 -10.40035 -9.90571 -9.78257 -9.77785 -9.55185 -9.34484 -8.76235 -8.32375 -6.84335 -5.72841 -3.06323 1.40312 2.12685 2.72422 3.09270 3.25063 3.41441 3.47719 3.50117 4.16679 4.49070 4.54134 4.57246 4.69093 4.98585 5.04722 5.18355 5.22980 5.36528 5.45657 5.50044 5.54115 5.54620 5.66146 5.80166 5.89791 5.97695 6.18566 6.30099 6.44525 6.53391 6.69329 6.86415 7.26136 7.45121 7.53360 7.61764 8.02968 8.14992 8.31601 9.07953 9.74363 10.67691 11.43847 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.004089 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.321622 B = 6845.831476 C = 7639.432310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.116 3.884 4 C 0.134 3.866 5 H 0.042 0.958 6 C -0.165 4.165 7 C 0.147 3.853 8 N -0.601 5.601 9 C -0.214 4.214 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.910 3.090 14 H -0.279 1.279 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.506 3.494 18 O -0.527 6.527 19 C -0.062 4.062 20 C -0.183 4.183 21 C 0.005 3.995 22 N -0.368 5.368 23 O 0.096 5.904 24 C -0.047 4.047 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.020 0.980 34 H 0.252 0.748 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.188 0.812 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -16.141 6.167 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.345 5.345 3 C -0.007 4.007 4 C 0.026 3.974 5 H 0.059 0.941 6 C -0.204 4.204 7 C 0.022 3.978 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.098 0.902 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.741 3.259 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.293 3.707 18 O -0.402 6.402 19 C -0.102 4.102 20 C -0.187 4.187 21 C -0.174 4.174 22 N -0.072 5.072 23 O 0.031 5.969 24 C -0.129 4.129 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.205 0.795 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.930 -16.833 5.630 20.845 hybrid contribution 0.265 1.205 0.304 1.271 sum -10.664 -15.628 5.934 19.829 Atomic orbital electron populations 1.21817 0.79825 1.02843 1.02044 1.47893 1.06873 1.06449 1.73278 1.21916 0.97363 0.82287 0.99167 1.22414 0.90303 0.91063 0.93599 0.94057 1.23719 0.96193 0.99864 1.00592 1.22089 0.85565 0.99461 0.90699 1.45654 1.28637 1.16845 1.41506 1.18977 0.99567 0.97069 1.18511 0.90216 1.24769 0.99392 0.96566 0.99657 1.69834 1.40274 1.10073 1.36566 0.86064 0.82613 0.78668 0.78586 1.20387 1.21763 1.21680 1.20443 0.88108 0.84961 0.77184 1.90769 1.14152 1.86955 1.48333 1.19945 0.96208 0.88852 1.05234 1.20776 1.04360 1.00983 0.92604 1.24916 0.96571 0.94102 1.01824 1.73843 1.18942 1.22479 0.91890 1.84795 1.51697 1.44536 1.15837 1.25738 0.94332 0.91588 1.01201 0.92373 0.91494 0.90785 0.89898 0.90463 0.92946 0.90547 0.90556 0.96202 0.93794 0.87605 0.87543 0.79481 0.76907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.30 59.84 0.62 1.28 16 2 N -0.61 -8.19 2.87 -181.57 -0.52 -8.71 16 3 C 0.12 2.06 5.41 -4.04 -0.02 2.03 16 4 C 0.13 2.78 4.31 -72.39 -0.31 2.47 16 5 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 6 C -0.17 -3.03 8.02 -26.21 -0.21 -3.24 16 7 C 0.15 3.51 7.51 -8.51 -0.06 3.45 16 8 N -0.60 -15.64 3.65 -176.99 -0.65 -16.28 16 9 C -0.21 -6.13 10.55 -15.06 -0.16 -6.29 16 10 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 11 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.67 11.43 55.49 0.63 -27.03 16 13 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 17 C 0.51 7.15 7.65 -10.98 -0.08 7.06 16 18 O -0.53 -10.28 15.59 5.56 0.09 -10.19 16 19 C -0.06 -0.55 4.74 -29.03 -0.14 -0.69 16 20 C -0.18 -1.98 4.82 -104.42 -0.50 -2.48 16 21 C 0.00 0.06 12.16 -17.06 -0.21 -0.15 16 22 N -0.37 -5.00 12.07 30.35 0.37 -4.63 16 23 O 0.10 1.16 11.20 17.18 0.19 1.36 16 24 C -0.05 -0.46 12.26 29.74 0.36 -0.09 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.35 6.45 -51.92 -0.33 0.02 16 27 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 28 H 0.08 1.74 7.36 -51.93 -0.38 1.36 16 29 H 0.08 1.30 7.69 -51.93 -0.40 0.90 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 32 H 0.08 2.00 6.93 -51.93 -0.36 1.64 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.11 0.61 7.58 -51.93 -0.39 0.22 16 36 H 0.11 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.19 1.83 8.06 -52.48 -0.42 1.41 16 38 H 0.21 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -36.36 325.66 -6.01 -42.37 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -5.19 Total: -2.49 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -0.81 Total: 3.05 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.17 Total: -56.66 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.28 Total: -8.84 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.36 -6.01 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707047927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.996 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds