Wall clock time and date at job start Tue Mar 31 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35495 * 116.99755 * 2 1 4 4 C 1.39166 * 119.52167 * 179.97438 * 3 2 1 5 5 C 1.37955 * 119.26323 * 179.97438 * 4 3 2 6 6 C 1.40281 * 118.36005 * 359.97438 * 5 4 3 7 7 C 1.47612 * 120.50247 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00275 * 141.69967 * 7 6 5 9 9 N 1.34779 * 119.99963 * 321.69477 * 7 6 5 10 10 C 1.46500 * 119.99563 * 4.81355 * 9 7 6 11 11 C 1.46498 * 120.00189 * 184.81664 * 9 7 6 12 12 C 1.53001 * 109.47357 * 89.99693 * 11 9 7 13 13 N 1.46495 * 109.46980 * 180.02562 * 12 11 9 14 14 C 1.36943 * 119.99872 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99969 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99831 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00364 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46871 * 90.00231 * 18 16 14 20 20 H 1.48497 * 109.47539 * 210.00244 * 18 16 14 21 21 H 1.48507 * 109.46838 * 330.00551 * 18 16 14 22 22 C 1.39527 * 119.00026 * 359.97438 * 6 5 4 23 23 N 1.31664 * 120.62717 * 0.02562 * 22 6 5 24 24 H 1.08996 * 109.47536 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47415 * 300.00147 * 1 2 3 26 26 H 1.08996 * 109.47177 * 60.00469 * 1 2 3 27 27 H 1.08007 * 120.37032 * 0.27421 * 4 3 2 28 28 H 1.08000 * 120.82317 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47502 * 84.92105 * 10 9 7 30 30 H 1.09006 * 109.46672 * 204.91531 * 10 9 7 31 31 H 1.08999 * 109.47437 * 324.91705 * 10 9 7 32 32 H 1.09001 * 109.46960 * 210.00048 * 11 9 7 33 33 H 1.09001 * 109.47016 * 329.99643 * 11 9 7 34 34 H 1.09001 * 109.47375 * 300.00101 * 12 11 9 35 35 H 1.09001 * 109.47098 * 60.00000 * 12 11 9 36 36 H 0.96997 * 120.00451 * 0.02562 * 13 12 11 37 37 H 0.97003 * 119.99875 * 179.97438 * 17 16 14 38 38 H 1.07994 * 119.68655 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2686 0.0005 5 6 4.0551 2.5006 0.0000 6 6 3.2525 3.6511 -0.0016 7 6 3.8669 4.9933 -0.0017 8 8 3.3694 5.8896 -0.6554 9 7 4.9794 5.2252 0.7230 10 6 5.6388 4.1219 1.4259 11 6 5.5290 6.5805 0.8078 12 6 4.9084 7.3088 2.0017 13 7 5.4576 8.6643 2.0861 14 6 5.0472 9.5084 3.0833 15 1 4.3184 9.1750 3.8072 16 6 5.5672 10.7929 3.1630 17 7 5.1724 11.6045 4.1211 18 14 6.8274 11.3700 1.9105 19 1 6.1294 11.9916 0.7565 20 1 7.7295 12.3679 2.5394 21 1 7.6248 10.2090 1.4398 22 6 1.8646 3.5077 -0.0032 23 7 1.3139 2.3118 -0.0026 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 4.0210 0.3617 -0.0035 28 1 5.1324 2.5775 0.0000 29 1 6.3155 3.6087 0.7427 30 1 6.2048 4.5157 2.2702 31 1 4.8870 3.4206 1.7878 32 1 6.6100 6.5267 0.9369 33 1 5.2991 7.1238 -0.1087 34 1 3.8274 7.3626 1.8726 35 1 5.1382 6.7655 2.9183 36 1 6.1119 8.9639 1.4358 37 1 5.5361 12.5020 4.1770 38 1 1.2362 4.3859 -0.0040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713612466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:58 Heat of formation + Delta-G solvation = -1.763584 kcal Electronic energy + Delta-G solvation = -21036.012617 eV Core-core repulsion = 17687.465979 eV Total energy + Delta-G solvation = -3348.546638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20584 -39.77574 -37.97320 -36.12841 -34.67018 -33.01486 -31.69451 -31.07824 -28.67612 -27.82042 -26.74178 -24.69350 -23.56485 -23.07405 -21.44875 -19.88902 -18.81360 -17.74790 -17.52038 -17.21777 -16.42005 -16.07415 -15.51782 -14.97641 -14.75647 -14.62902 -14.15237 -13.86007 -13.76303 -13.63615 -13.49905 -13.09863 -12.79249 -12.65031 -12.33385 -12.13138 -11.64199 -11.51213 -11.17318 -11.11432 -10.75564 -10.31879 -10.23554 -10.17041 -9.77876 -9.59750 -8.90175 -8.89773 -8.64623 -7.24916 -5.76147 -3.12730 0.52620 0.82815 2.60805 2.68098 2.91717 3.38008 3.42036 3.46496 3.47341 3.91516 4.27468 4.46841 4.59940 4.66391 4.68130 4.91035 4.96522 4.96922 5.14517 5.23169 5.28775 5.37898 5.44792 5.51356 5.56903 5.58970 5.68771 5.71478 5.92141 5.94242 6.36867 6.60134 6.76455 6.79171 7.28375 7.44385 7.98405 8.09984 8.42033 9.20394 9.92463 10.11466 11.42122 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038309 B = 0.003103 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.728733 B = 9021.527334 C = 9252.252714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.336 3.664 4 C -0.197 4.197 5 C -0.018 4.018 6 C -0.217 4.217 7 C 0.565 3.435 8 O -0.525 6.525 9 N -0.605 5.605 10 C 0.071 3.929 11 C 0.104 3.896 12 C 0.146 3.854 13 N -0.753 5.753 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.887 3.113 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.200 3.800 23 N -0.542 5.542 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.148 0.852 28 H 0.155 0.845 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.027 0.973 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 -26.342 -9.067 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.212 6.212 3 C 0.157 3.843 4 C -0.218 4.218 5 C -0.043 4.043 6 C -0.223 4.223 7 C 0.352 3.648 8 O -0.401 6.401 9 N -0.338 5.338 10 C -0.072 4.072 11 C -0.019 4.019 12 C 0.018 3.982 13 N -0.400 5.400 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.582 5.582 18 Si 0.717 3.283 19 H -0.209 1.209 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.043 3.957 23 N -0.266 5.266 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.865 -26.144 -9.207 27.986 hybrid contribution 1.563 0.646 -0.679 1.823 sum -2.302 -25.497 -9.886 27.443 Atomic orbital electron populations 1.22925 0.76771 1.03146 1.02872 1.86205 1.23349 1.24531 1.87111 1.20121 0.89552 0.84829 0.89811 1.20997 0.91870 0.99506 1.09401 1.21947 1.01194 0.90364 0.90771 1.20785 0.95731 0.94361 1.11400 1.17963 0.80232 0.87111 0.79459 1.90838 1.61912 1.45522 1.41868 1.47640 1.27086 1.09625 1.49452 1.22165 0.97777 0.90028 0.97270 1.21789 0.97906 0.80999 1.01188 1.20894 0.96884 0.85947 0.94481 1.42552 1.51344 1.10943 1.35120 1.19026 1.20406 0.93075 1.04864 0.89237 1.24678 0.99949 0.96306 0.98219 1.69707 1.46894 1.07656 1.33916 0.86517 0.81891 0.78286 0.81636 1.20941 1.21695 1.20332 1.22593 0.91378 0.93786 0.87958 1.67422 1.40347 0.98586 1.20206 0.88455 0.91958 0.92011 0.83454 0.82782 0.92295 0.90067 0.90827 0.90267 0.89418 0.95100 0.95510 0.80625 0.93016 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.37 101.05 1.05 1.31 16 2 O -0.31 -2.87 10.46 -18.18 -0.19 -3.06 16 3 C 0.34 3.46 7.49 -16.96 -0.13 3.33 16 4 C -0.20 -1.65 10.02 -39.34 -0.39 -2.04 16 5 C -0.02 -0.15 7.67 -38.92 -0.30 -0.45 16 6 C -0.22 -2.51 5.27 -104.82 -0.55 -3.06 16 7 C 0.57 8.18 7.37 -12.43 -0.09 8.09 16 8 O -0.53 -9.72 16.46 5.30 0.09 -9.64 16 9 N -0.61 -7.91 2.87 -182.78 -0.53 -8.43 16 10 C 0.07 0.61 8.87 59.85 0.53 1.14 16 11 C 0.10 1.63 5.53 -4.04 -0.02 1.60 16 12 C 0.15 2.92 6.58 -4.04 -0.03 2.89 16 13 N -0.75 -18.37 5.41 -59.91 -0.32 -18.69 16 14 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 15 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 16 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 17 N -0.93 -29.74 13.97 55.49 0.78 -28.97 16 18 Si 0.89 22.32 27.74 -169.99 -4.71 17.60 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 22 C 0.20 2.36 10.79 -17.14 -0.18 2.18 16 23 N -0.54 -6.22 9.18 -12.97 -0.12 -6.34 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 26 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 27 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 28 H 0.15 0.92 5.30 -52.49 -0.28 0.65 16 29 H 0.06 0.36 6.86 -51.93 -0.36 0.00 16 30 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 31 H 0.07 0.57 5.83 -51.93 -0.30 0.26 16 32 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.09 1.51 7.36 -51.93 -0.38 1.13 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.36 8.46 5.53 -40.82 -0.23 8.23 16 37 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 38 H 0.17 1.95 8.05 -52.49 -0.42 1.53 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -35.76 322.86 -5.44 -41.21 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.93 Total: 3.66 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -0.37 Total: 7.79 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.19 Total: -62.44 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.10 Total: -12.70 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.76 -5.44 -41.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713612466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.446 kcal (2) G-P(sol) polarization free energy of solvation -35.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds