Wall clock time and date at job start Tue Mar 31 2020 01:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35495 * 116.99755 * 2 1 4 4 C 1.39166 * 119.52167 * 179.97438 * 3 2 1 5 5 C 1.37955 * 119.26323 * 179.97438 * 4 3 2 6 6 C 1.40281 * 118.36005 * 359.97438 * 5 4 3 7 7 C 1.47612 * 120.50247 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00275 * 141.69967 * 7 6 5 9 9 N 1.34779 * 119.99963 * 321.69477 * 7 6 5 10 10 C 1.46500 * 119.99563 * 4.81355 * 9 7 6 11 11 C 1.46498 * 120.00189 * 184.81664 * 9 7 6 12 12 C 1.53001 * 109.47357 * 89.99693 * 11 9 7 13 13 N 1.46495 * 109.46980 * 180.02562 * 12 11 9 14 14 C 1.36943 * 119.99872 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99831 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99969 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99831 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00364 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46871 * 90.00231 * 18 16 14 20 20 H 1.48497 * 109.47539 * 210.00244 * 18 16 14 21 21 H 1.48507 * 109.46838 * 330.00551 * 18 16 14 22 22 C 1.39527 * 119.00026 * 359.97438 * 6 5 4 23 23 N 1.31664 * 120.62717 * 0.02562 * 22 6 5 24 24 H 1.08996 * 109.47536 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47415 * 300.00147 * 1 2 3 26 26 H 1.08996 * 109.47177 * 60.00469 * 1 2 3 27 27 H 1.08007 * 120.37032 * 0.27421 * 4 3 2 28 28 H 1.08000 * 120.82317 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47502 * 84.92105 * 10 9 7 30 30 H 1.09006 * 109.46672 * 204.91531 * 10 9 7 31 31 H 1.08999 * 109.47437 * 324.91705 * 10 9 7 32 32 H 1.09001 * 109.46960 * 210.00048 * 11 9 7 33 33 H 1.09001 * 109.47016 * 329.99643 * 11 9 7 34 34 H 1.09001 * 109.47375 * 300.00101 * 12 11 9 35 35 H 1.09001 * 109.47098 * 60.00000 * 12 11 9 36 36 H 0.96997 * 120.00451 * 0.02562 * 13 12 11 37 37 H 0.97003 * 119.99875 * 179.97438 * 17 16 14 38 38 H 1.07994 * 119.68655 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4344 1.2686 0.0005 5 6 4.0551 2.5006 0.0000 6 6 3.2525 3.6511 -0.0016 7 6 3.8669 4.9933 -0.0017 8 8 3.3694 5.8896 -0.6554 9 7 4.9794 5.2252 0.7230 10 6 5.6388 4.1219 1.4259 11 6 5.5290 6.5805 0.8078 12 6 4.9084 7.3088 2.0017 13 7 5.4576 8.6643 2.0861 14 6 5.0472 9.5084 3.0833 15 1 4.3184 9.1750 3.8072 16 6 5.5672 10.7929 3.1630 17 7 5.1724 11.6045 4.1211 18 14 6.8274 11.3700 1.9105 19 1 6.1294 11.9916 0.7565 20 1 7.7295 12.3679 2.5394 21 1 7.6248 10.2090 1.4398 22 6 1.8646 3.5077 -0.0032 23 7 1.3139 2.3118 -0.0026 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 4.0210 0.3617 -0.0035 28 1 5.1324 2.5775 0.0000 29 1 6.3155 3.6087 0.7427 30 1 6.2048 4.5157 2.2702 31 1 4.8870 3.4206 1.7878 32 1 6.6100 6.5267 0.9369 33 1 5.2991 7.1238 -0.1087 34 1 3.8274 7.3626 1.8726 35 1 5.1382 6.7655 2.9183 36 1 6.1119 8.9639 1.4358 37 1 5.5361 12.5020 4.1770 38 1 1.2362 4.3859 -0.0040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713612466.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:57 Heat of formation + Delta-G solvation = -29.991446 kcal Electronic energy + Delta-G solvation = -21037.236669 eV Core-core repulsion = 17687.465979 eV Total energy + Delta-G solvation = -3349.770690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03790 -40.75257 -38.76409 -37.52389 -36.28714 -34.09049 -33.39831 -32.12509 -30.13826 -28.47600 -27.66006 -26.05417 -24.56960 -24.19197 -23.17212 -20.99433 -19.70501 -19.51844 -18.52166 -18.12292 -17.29106 -17.09715 -16.75722 -16.37201 -15.70714 -15.62487 -15.53417 -15.19401 -15.06539 -14.72204 -14.57368 -14.34297 -13.92580 -13.72021 -13.45723 -13.07049 -12.92112 -12.83053 -12.73786 -12.38359 -12.20256 -12.09858 -11.83598 -11.29350 -11.02751 -10.98561 -10.71123 -9.83821 -9.60043 -9.37645 -8.05823 -5.41984 -0.30387 0.10802 1.37477 1.43477 1.49720 1.56272 1.88141 2.04790 2.47353 2.64446 3.13987 3.25279 3.39391 3.70933 3.75671 3.95964 3.97179 4.14417 4.15628 4.28787 4.41227 4.42970 4.53087 4.62441 4.65052 4.70762 4.78787 4.91146 4.95312 4.98292 5.05440 5.23028 5.44007 5.70428 6.07061 6.16923 6.27131 6.64079 7.00371 7.04126 7.75815 7.97420 9.15503 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038309 B = 0.003103 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.728733 B = 9021.527334 C = 9252.252714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C 0.323 3.677 4 C -0.185 4.185 5 C -0.003 4.003 6 C -0.228 4.228 7 C 0.562 3.438 8 O -0.578 6.578 9 N -0.602 5.602 10 C 0.060 3.940 11 C 0.116 3.884 12 C 0.148 3.852 13 N -0.754 5.754 14 C -0.242 4.242 15 H 0.051 0.949 16 C -0.064 4.064 17 N -0.983 5.983 18 Si 0.961 3.039 19 H -0.281 1.281 20 H -0.291 1.291 21 H -0.242 1.242 22 C 0.185 3.815 23 N -0.558 5.558 24 H 0.127 0.873 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.181 0.819 28 H 0.188 0.812 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.002 0.998 35 H 0.034 0.966 36 H 0.369 0.631 37 H 0.260 0.740 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -29.121 -10.327 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.216 6.216 3 C 0.144 3.856 4 C -0.205 4.205 5 C -0.027 4.027 6 C -0.233 4.233 7 C 0.351 3.649 8 O -0.458 6.458 9 N -0.333 5.333 10 C -0.081 4.081 11 C -0.007 4.007 12 C 0.020 3.980 13 N -0.401 5.401 14 C -0.373 4.373 15 H 0.069 0.931 16 C -0.255 4.255 17 N -0.633 5.633 18 Si 0.787 3.213 19 H -0.208 1.208 20 H -0.218 1.218 21 H -0.166 1.166 22 C 0.028 3.972 23 N -0.282 5.282 24 H 0.145 0.855 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.199 0.801 28 H 0.205 0.795 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.020 0.980 35 H 0.052 0.948 36 H 0.203 0.797 37 H 0.069 0.931 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.302 -29.010 -10.464 30.867 hybrid contribution 0.637 1.382 -0.203 1.535 sum -0.665 -27.627 -10.667 29.623 Atomic orbital electron populations 1.23109 0.75723 1.04937 1.02305 1.86211 1.24444 1.23995 1.86912 1.20549 0.90653 0.84725 0.89701 1.21376 0.91119 1.00622 1.07411 1.22247 1.02414 0.89043 0.89019 1.20584 0.95684 0.93877 1.13202 1.18427 0.80067 0.87675 0.78730 1.90805 1.63376 1.47396 1.44271 1.47709 1.26823 1.09632 1.49154 1.22542 0.98492 0.88943 0.98093 1.21502 0.99188 0.81990 0.98014 1.20976 0.95395 0.84575 0.97011 1.42489 1.51509 1.12027 1.34053 1.18973 1.19303 0.94027 1.05004 0.93079 1.25603 1.02776 0.96362 1.00779 1.69899 1.48844 1.08139 1.36438 0.85332 0.79016 0.78617 0.78371 1.20767 1.21776 1.16586 1.22484 0.91825 0.93820 0.89105 1.67366 1.41075 0.98804 1.20967 0.85515 0.92558 0.92570 0.80125 0.79503 0.88468 0.89536 0.89736 0.87108 0.91070 0.97992 0.94751 0.79689 0.93125 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.37 113.37 1.18 1.60 16 2 O -0.31 -5.21 10.46 -87.96 -0.92 -6.13 16 3 C 0.32 6.08 7.49 84.83 0.64 6.72 16 4 C -0.19 -2.44 10.02 22.43 0.22 -2.21 16 5 C 0.00 -0.03 7.67 22.70 0.17 0.14 16 6 C -0.23 -5.02 5.27 -20.00 -0.11 -5.13 16 7 C 0.56 16.03 7.37 86.72 0.64 16.67 16 8 O -0.58 -22.14 16.46 -3.96 -0.07 -22.20 16 9 N -0.60 -14.51 2.87 -850.46 -2.44 -16.96 16 10 C 0.06 0.79 8.87 127.77 1.13 1.93 16 11 C 0.12 3.45 5.53 86.38 0.48 3.93 16 12 C 0.15 5.89 6.58 86.38 0.57 6.46 16 13 N -0.75 -36.39 5.41 -343.46 -1.86 -38.24 16 14 C -0.24 -14.35 10.47 84.03 0.88 -13.47 16 15 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 16 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 17 N -0.98 -64.21 13.97 21.65 0.30 -63.91 16 18 Si 0.96 45.66 27.74 68.60 1.90 47.56 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.24 -10.01 6.52 99.48 0.65 -9.36 16 22 C 0.18 4.47 10.79 85.03 0.92 5.38 16 23 N -0.56 -12.71 9.18 -307.83 -2.82 -15.54 16 24 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 26 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 27 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 28 H 0.19 1.23 5.30 -2.91 -0.02 1.22 16 29 H 0.10 0.61 6.86 -2.39 -0.02 0.59 16 30 H 0.09 1.11 8.03 -2.38 -0.02 1.10 16 31 H 0.08 0.97 5.83 -2.39 -0.01 0.95 16 32 H 0.11 2.62 8.07 -2.39 -0.02 2.60 16 33 H 0.07 2.39 7.36 -2.39 -0.02 2.37 16 34 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.37 16.52 5.53 -92.71 -0.51 16.01 16 37 H 0.26 16.05 8.31 -92.71 -0.77 15.27 16 38 H 0.16 4.00 8.05 -2.91 -0.02 3.98 16 Total: -1.00 -81.39 322.86 1.79 -79.60 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.51 Total: 17.16 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 7.19 Total: 18.65 kcal Atomic # 7 Polarization: -127.82 SS G_CDS: -6.82 Total: -134.64 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.99 Total: -28.33 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -81.39 1.79 -79.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713612466.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.607 kcal (2) G-P(sol) polarization free energy of solvation -81.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds