Wall clock time and date at job start Tue Mar 31 2020 01:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99726 * 2 1 4 4 C 1.52997 * 109.47378 * 270.00237 * 3 2 1 5 5 N 1.46502 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99492 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99494 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00238 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99653 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47331 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46961 * 120.00263 * 10 8 6 13 13 H 1.48502 * 109.47329 * 239.99736 * 10 8 6 14 14 C 1.34778 * 120.00035 * 180.02562 * 2 1 3 15 15 O 1.21273 * 119.99772 * 180.02562 * 14 2 1 16 16 C 1.50695 * 119.99864 * 359.97438 * 14 2 1 17 17 N 1.46507 * 109.47098 * 180.02562 * 16 14 2 18 18 C 1.35763 * 119.62574 * 89.99849 * 17 16 14 19 19 C 1.35346 * 120.69997 * 180.27933 * 18 17 16 20 20 C 1.40202 * 119.94860 * 359.43664 * 19 18 17 21 21 C 1.36395 * 119.26120 * 0.57668 * 20 19 18 22 22 C 1.34664 * 119.61981 * 270.02248 * 17 16 14 23 23 O 1.22055 * 119.98569 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.47210 * 269.99526 * 1 2 3 25 25 H 1.09000 * 109.47342 * 29.99544 * 1 2 3 26 26 H 1.09009 * 109.47355 * 149.99361 * 1 2 3 27 27 H 1.09001 * 109.46822 * 30.00326 * 3 2 1 28 28 H 1.08998 * 109.46560 * 150.00099 * 3 2 1 29 29 H 1.09002 * 109.47031 * 300.00368 * 4 3 2 30 30 H 1.09004 * 109.47105 * 60.00028 * 4 3 2 31 31 H 0.96999 * 120.00064 * 0.02562 * 5 4 3 32 32 H 0.96999 * 120.00119 * 179.97438 * 9 8 6 33 33 H 1.08991 * 109.47470 * 60.00573 * 16 14 2 34 34 H 1.09001 * 109.47078 * 300.00121 * 16 14 2 35 35 H 1.08002 * 119.64669 * 359.97438 * 18 17 16 36 36 H 1.07996 * 120.02410 * 179.69320 * 19 18 17 37 37 H 1.08002 * 120.36615 * 180.31976 * 20 19 18 38 38 H 1.08002 * 120.34395 * 179.74309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4424 5 7 3.1854 2.9790 -1.4423 6 6 3.5282 3.5717 -2.6283 7 1 3.2579 3.1043 -3.5636 8 6 4.2223 4.7739 -2.6281 9 7 4.5512 5.3438 -1.4883 10 14 4.6893 5.5828 -4.2458 11 1 4.2064 4.7475 -5.3746 12 1 4.0662 6.9284 -4.3245 13 1 6.1663 5.7160 -4.3245 14 6 2.1389 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0001 16 6 1.3854 -2.4722 -0.0005 17 7 2.3374 -3.5858 -0.0005 18 6 2.7736 -4.0959 1.1796 19 6 3.6572 -5.1208 1.2050 20 6 4.1222 -5.6739 0.0036 21 6 3.6832 -5.1598 -1.1810 22 6 2.7703 -4.0914 -1.1712 23 8 2.3689 -3.6221 -2.2240 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5140 27 1 1.6083 2.0284 0.5139 28 1 3.1498 1.1384 0.5138 29 1 3.0415 0.9509 -1.9563 30 1 1.4999 1.8409 -1.9563 31 1 3.4285 3.3986 -0.6022 32 1 5.0366 6.1836 -1.4882 33 1 0.7585 -2.5299 -0.8902 34 1 0.7591 -2.5302 0.8897 35 1 2.4153 -3.6762 2.1080 36 1 4.0007 -5.5149 2.1500 37 1 4.8234 -6.4953 0.0160 38 1 4.0332 -5.5698 -2.1169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713662530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:21 Heat of formation + Delta-G solvation = -7.109203 kcal Electronic energy + Delta-G solvation = -21392.026088 eV Core-core repulsion = 18043.247647 eV Total energy + Delta-G solvation = -3348.778442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61768 -39.58943 -36.99309 -36.04124 -34.72445 -34.32802 -31.49651 -30.11396 -29.25502 -27.78493 -26.33700 -24.22010 -23.70671 -22.80557 -21.48761 -19.52079 -17.82539 -17.54676 -17.40686 -17.10315 -16.53300 -15.87575 -15.54911 -15.19198 -14.68640 -14.43245 -14.26680 -13.73117 -13.56592 -13.35327 -13.08738 -12.87144 -12.64324 -12.50573 -12.32383 -12.06877 -12.02121 -11.27525 -11.00731 -10.87095 -10.68983 -10.64511 -10.06878 -10.04520 -9.79732 -9.65879 -8.85153 -8.61369 -8.12743 -6.90824 -5.73713 -3.02836 0.66051 1.75275 2.27761 2.51948 3.01006 3.46822 3.52542 3.55128 3.56763 4.28451 4.31647 4.37752 4.64391 4.65627 4.78492 4.95414 5.00657 5.07937 5.15811 5.24849 5.46697 5.54977 5.63973 5.75579 5.80280 5.86716 6.01621 6.08568 6.09499 6.31080 6.50219 6.73034 6.89032 6.91448 7.34126 7.74765 7.91818 8.10451 8.44836 9.55974 10.11304 10.46748 11.49353 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.003556 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.600175 B = 7873.212911 C = 8345.335183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.109 3.891 4 C 0.142 3.858 5 N -0.730 5.730 6 C -0.237 4.237 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.497 3.503 15 O -0.519 6.519 16 C 0.072 3.928 17 N -0.481 5.481 18 C 0.142 3.858 19 C -0.234 4.234 20 C -0.017 4.017 21 C -0.240 4.240 22 C 0.518 3.482 23 O -0.547 6.547 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.023 0.977 30 H 0.019 0.981 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.159 0.841 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -22.505 10.714 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C -0.013 4.013 4 C 0.013 3.987 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.283 3.717 15 O -0.394 6.394 16 C -0.053 4.053 17 N -0.192 5.192 18 C 0.015 3.985 19 C -0.257 4.257 20 C -0.039 4.039 21 C -0.262 4.262 22 C 0.320 3.680 23 O -0.428 6.428 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.217 0.783 32 H 0.064 0.936 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.152 0.848 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.354 -22.137 9.835 25.967 hybrid contribution 0.367 0.736 -0.509 0.967 sum -8.987 -21.401 9.326 25.015 Atomic orbital electron populations 1.21897 0.79393 1.03911 1.01824 1.47767 1.07059 1.06140 1.73187 1.21748 0.97430 0.82787 0.99378 1.20912 0.95250 0.89483 0.93044 1.42209 1.67075 1.21611 1.06612 1.19274 1.29257 1.02265 0.85996 0.91111 1.24745 1.01250 0.98036 0.96984 1.69670 1.45152 1.19581 1.23909 0.86083 0.77934 0.79089 0.82927 1.20504 1.21832 1.21785 1.20602 0.88443 0.85309 0.77389 1.90788 1.13459 1.86785 1.48321 1.21866 0.91899 0.84538 1.07023 1.45090 1.38218 1.28508 1.07334 1.21899 0.94029 0.93333 0.89192 1.20609 1.03906 1.01630 0.99589 1.21424 0.94303 0.96200 0.91955 1.22101 1.03677 1.00205 1.00199 1.17171 0.83370 0.84864 0.82577 1.90981 1.59433 1.62922 1.29506 0.92239 0.90032 0.91241 0.90173 0.89673 0.95876 0.96318 0.78291 0.93556 0.85264 0.86229 0.82328 0.83758 0.84832 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.24 59.85 0.61 1.25 16 2 N -0.61 -8.39 2.87 -181.57 -0.52 -8.91 16 3 C 0.11 1.89 5.52 -4.04 -0.02 1.87 16 4 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 5 N -0.73 -19.70 5.60 -59.91 -0.34 -20.03 16 6 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 7 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.11 13.06 55.49 0.72 -28.38 16 10 Si 0.91 23.31 29.55 -169.99 -5.02 18.29 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 14 C 0.50 7.44 7.74 -10.99 -0.09 7.35 16 15 O -0.52 -10.35 16.01 5.56 0.09 -10.26 16 16 C 0.07 0.74 4.37 -5.19 -0.02 0.72 16 17 N -0.48 -5.65 2.07 -121.07 -0.25 -5.90 16 18 C 0.14 1.19 10.28 -16.84 -0.17 1.02 16 19 C -0.23 -1.76 10.01 -39.88 -0.40 -2.16 16 20 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 21 C -0.24 -2.84 9.99 -39.38 -0.39 -3.24 16 22 C 0.52 7.72 7.40 -15.44 -0.11 7.60 16 23 O -0.55 -10.35 16.64 4.87 0.08 -10.27 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.75 8.07 -51.93 -0.42 0.33 16 26 H 0.07 0.46 6.44 -51.92 -0.33 0.13 16 27 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 28 H 0.08 1.64 7.42 -51.93 -0.39 1.26 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.38 10.62 7.67 -40.82 -0.31 10.30 16 32 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.13 1.33 6.65 -51.93 -0.35 0.99 16 34 H 0.12 0.63 7.98 -51.93 -0.41 0.21 16 35 H 0.16 0.75 8.04 -52.49 -0.42 0.33 16 36 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -40.10 329.93 -6.67 -46.77 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.13 Total: 4.44 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -1.27 Total: 9.28 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.38 Total: -63.23 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.17 Total: -20.53 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -40.10 -6.67 -46.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713662530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.661 kcal (2) G-P(sol) polarization free energy of solvation -40.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds