Wall clock time and date at job start Tue Mar 31 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99726 * 2 1 4 4 C 1.52997 * 109.47378 * 270.00237 * 3 2 1 5 5 N 1.46502 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99492 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99974 * 0.02562 * 6 5 4 8 8 C 1.38811 * 119.99494 * 179.97438 * 6 5 4 9 9 N 1.31617 * 120.00238 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99653 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47331 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46961 * 120.00263 * 10 8 6 13 13 H 1.48502 * 109.47329 * 239.99736 * 10 8 6 14 14 C 1.34778 * 120.00035 * 180.02562 * 2 1 3 15 15 O 1.21273 * 119.99772 * 180.02562 * 14 2 1 16 16 C 1.50695 * 119.99864 * 359.97438 * 14 2 1 17 17 N 1.46507 * 109.47098 * 180.02562 * 16 14 2 18 18 C 1.35763 * 119.62574 * 89.99849 * 17 16 14 19 19 C 1.35346 * 120.69997 * 180.27933 * 18 17 16 20 20 C 1.40202 * 119.94860 * 359.43664 * 19 18 17 21 21 C 1.36395 * 119.26120 * 0.57668 * 20 19 18 22 22 C 1.34664 * 119.61981 * 270.02248 * 17 16 14 23 23 O 1.22055 * 119.98569 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.47210 * 269.99526 * 1 2 3 25 25 H 1.09000 * 109.47342 * 29.99544 * 1 2 3 26 26 H 1.09009 * 109.47355 * 149.99361 * 1 2 3 27 27 H 1.09001 * 109.46822 * 30.00326 * 3 2 1 28 28 H 1.08998 * 109.46560 * 150.00099 * 3 2 1 29 29 H 1.09002 * 109.47031 * 300.00368 * 4 3 2 30 30 H 1.09004 * 109.47105 * 60.00028 * 4 3 2 31 31 H 0.96999 * 120.00064 * 0.02562 * 5 4 3 32 32 H 0.96999 * 120.00119 * 179.97438 * 9 8 6 33 33 H 1.08991 * 109.47470 * 60.00573 * 16 14 2 34 34 H 1.09001 * 109.47078 * 300.00121 * 16 14 2 35 35 H 1.08002 * 119.64669 * 359.97438 * 18 17 16 36 36 H 1.07996 * 120.02410 * 179.69320 * 19 18 17 37 37 H 1.08002 * 120.36615 * 180.31976 * 20 19 18 38 38 H 1.08002 * 120.34395 * 179.74309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4424 5 7 3.1854 2.9790 -1.4423 6 6 3.5282 3.5717 -2.6283 7 1 3.2579 3.1043 -3.5636 8 6 4.2223 4.7739 -2.6281 9 7 4.5512 5.3438 -1.4883 10 14 4.6893 5.5828 -4.2458 11 1 4.2064 4.7475 -5.3746 12 1 4.0662 6.9284 -4.3245 13 1 6.1663 5.7160 -4.3245 14 6 2.1389 -1.1672 -0.0005 15 8 3.3516 -1.1672 -0.0001 16 6 1.3854 -2.4722 -0.0005 17 7 2.3374 -3.5858 -0.0005 18 6 2.7736 -4.0959 1.1796 19 6 3.6572 -5.1208 1.2050 20 6 4.1222 -5.6739 0.0036 21 6 3.6832 -5.1598 -1.1810 22 6 2.7703 -4.0914 -1.1712 23 8 2.3689 -3.6221 -2.2240 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5140 27 1 1.6083 2.0284 0.5139 28 1 3.1498 1.1384 0.5138 29 1 3.0415 0.9509 -1.9563 30 1 1.4999 1.8409 -1.9563 31 1 3.4285 3.3986 -0.6022 32 1 5.0366 6.1836 -1.4882 33 1 0.7585 -2.5299 -0.8902 34 1 0.7591 -2.5302 0.8897 35 1 2.4153 -3.6762 2.1080 36 1 4.0007 -5.5149 2.1500 37 1 4.8234 -6.4953 0.0160 38 1 4.0332 -5.5698 -2.1169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713662530.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:20 Heat of formation + Delta-G solvation = -37.328326 kcal Electronic energy + Delta-G solvation = -21393.336488 eV Core-core repulsion = 18043.247647 eV Total energy + Delta-G solvation = -3350.088841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.51790 -40.73848 -37.99335 -37.49142 -36.17418 -35.52262 -33.49240 -30.99751 -30.57628 -28.95091 -27.47783 -25.73781 -24.79037 -23.96228 -23.11729 -20.68232 -19.30307 -18.66154 -18.47527 -18.31537 -17.45481 -17.11257 -16.71627 -16.43888 -16.23336 -15.49155 -15.36709 -15.30273 -15.08983 -14.96434 -14.35822 -14.10398 -13.50998 -13.32942 -13.19036 -13.13283 -12.99456 -12.92928 -12.79760 -12.67538 -12.40782 -12.14883 -11.93098 -11.55497 -11.10614 -11.05218 -10.79287 -9.80162 -9.13339 -8.97456 -8.03682 -5.34961 -0.09029 0.93991 1.36740 1.42599 1.44450 1.46130 1.54907 1.98943 2.50773 2.70990 3.29112 3.37021 3.65076 3.76755 3.98139 4.01428 4.05359 4.11068 4.17068 4.21847 4.31204 4.38378 4.49226 4.52779 4.72237 4.91160 4.93374 5.00356 5.04637 5.18074 5.35448 5.39195 5.44148 5.66032 6.05231 6.18228 6.25130 6.93503 7.00265 7.24473 7.94100 8.21384 9.19663 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023832 B = 0.003556 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.600175 B = 7873.212911 C = 8345.335183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.605 5.605 3 C 0.124 3.876 4 C 0.147 3.853 5 N -0.741 5.741 6 C -0.256 4.256 7 H 0.068 0.932 8 C -0.069 4.069 9 N -0.965 5.965 10 Si 0.978 3.022 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.290 1.290 14 C 0.489 3.511 15 O -0.581 6.581 16 C 0.078 3.922 17 N -0.483 5.483 18 C 0.134 3.866 19 C -0.232 4.232 20 C 0.008 3.992 21 C -0.288 4.288 22 C 0.495 3.505 23 O -0.614 6.614 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.060 0.940 29 H -0.013 1.013 30 H 0.029 0.971 31 H 0.377 0.623 32 H 0.255 0.745 33 H 0.128 0.872 34 H 0.183 0.817 35 H 0.203 0.797 36 H 0.186 0.814 37 H 0.169 0.831 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.048 -23.687 12.837 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.337 5.337 3 C 0.001 3.999 4 C 0.020 3.980 5 N -0.385 5.385 6 C -0.388 4.388 7 H 0.086 0.914 8 C -0.262 4.262 9 N -0.615 5.615 10 Si 0.806 3.194 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.217 1.217 14 C 0.277 3.723 15 O -0.460 6.460 16 C -0.046 4.046 17 N -0.192 5.192 18 C 0.009 3.991 19 C -0.254 4.254 20 C -0.014 4.014 21 C -0.310 4.310 22 C 0.301 3.699 23 O -0.502 6.502 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.123 0.877 28 H 0.079 0.921 29 H 0.005 0.995 30 H 0.047 0.953 31 H 0.210 0.790 32 H 0.064 0.936 33 H 0.146 0.854 34 H 0.200 0.800 35 H 0.220 0.780 36 H 0.203 0.797 37 H 0.186 0.814 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.733 -23.358 12.005 28.371 hybrid contribution 0.784 1.028 -1.045 1.662 sum -9.949 -22.331 10.960 26.791 Atomic orbital electron populations 1.22292 0.75815 1.04980 1.04664 1.47866 1.09102 1.04515 1.72258 1.21350 0.97616 0.85272 0.95702 1.20948 0.94111 0.86667 0.96321 1.42357 1.67579 1.22891 1.05647 1.19597 1.29554 1.02782 0.86845 0.91425 1.25613 1.01320 0.98622 1.00626 1.69810 1.45770 1.19918 1.25980 0.85022 0.77321 0.78157 0.78910 1.19548 1.20918 1.21696 1.21494 0.88036 0.86913 0.75866 1.90755 1.16302 1.87775 1.51166 1.22086 0.91270 0.81409 1.09868 1.45156 1.38092 1.28353 1.07622 1.22779 0.93779 0.93282 0.89290 1.21214 1.02692 1.00781 1.00674 1.21898 0.92758 0.95637 0.91057 1.22106 1.05666 1.01479 1.01721 1.17681 0.83852 0.85599 0.82814 1.90917 1.62234 1.65328 1.31728 0.88391 0.90483 0.88815 0.87676 0.92101 0.99547 0.95293 0.79017 0.93589 0.85427 0.79979 0.77980 0.79705 0.81372 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 10.24 127.77 1.31 2.22 16 2 N -0.60 -16.02 2.87 -846.76 -2.43 -18.45 16 3 C 0.12 4.35 5.52 86.38 0.48 4.82 16 4 C 0.15 6.75 6.58 86.38 0.57 7.32 16 5 N -0.74 -41.13 5.60 -343.44 -1.92 -43.05 16 6 C -0.26 -15.52 9.99 84.03 0.84 -14.68 16 7 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 8 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 9 N -0.96 -60.81 13.06 21.65 0.28 -60.53 16 10 Si 0.98 48.29 29.55 68.60 2.03 50.32 16 11 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 14 C 0.49 14.41 7.74 87.66 0.68 15.09 16 15 O -0.58 -23.96 16.01 -3.01 -0.05 -24.00 16 16 C 0.08 1.46 4.37 85.63 0.37 1.83 16 17 N -0.48 -10.82 2.07 -655.07 -1.36 -12.18 16 18 C 0.13 1.80 10.28 83.42 0.86 2.66 16 19 C -0.23 -2.61 10.01 22.08 0.22 -2.39 16 20 C 0.01 0.12 10.10 22.32 0.23 0.35 16 21 C -0.29 -7.09 9.99 22.40 0.22 -6.86 16 22 C 0.50 15.43 7.40 84.82 0.63 16.06 16 23 O -0.61 -25.18 16.64 -5.49 -0.09 -25.27 16 24 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 1.22 8.07 -2.39 -0.02 1.20 16 26 H 0.09 0.92 6.44 -2.38 -0.02 0.91 16 27 H 0.11 3.14 8.07 -2.39 -0.02 3.12 16 28 H 0.06 2.43 7.42 -2.39 -0.02 2.42 16 29 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.38 21.51 7.67 -92.71 -0.71 20.80 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.13 2.50 6.65 -2.39 -0.02 2.49 16 34 H 0.18 0.98 7.98 -2.39 -0.02 0.96 16 35 H 0.20 0.82 8.04 -2.91 -0.02 0.80 16 36 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -94.85 329.93 3.68 -91.17 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.36 Total: 19.28 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.87 Total: 22.72 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -5.43 Total: -134.21 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -0.14 Total: -49.28 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Total: -94.85 3.68 -91.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713662530.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.838 kcal (2) G-P(sol) polarization free energy of solvation -94.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds