Wall clock time and date at job start Tue Mar 31 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35752 * 117.00211 * 2 1 4 4 C 1.39207 * 120.81077 * 0.02562 * 3 2 1 5 5 C 1.38315 * 119.28735 * 179.97438 * 4 3 2 6 6 N 1.31616 * 120.97215 * 0.02562 * 5 4 3 7 7 C 1.32800 * 121.77599 * 359.72764 * 6 5 4 8 8 C 1.48186 * 119.69514 * 180.26820 * 7 6 5 9 9 O 1.21515 * 119.99815 * 173.05046 * 8 7 6 10 10 N 1.34773 * 120.00155 * 353.05257 * 8 7 6 11 11 C 1.46495 * 119.99958 * 2.03318 * 10 8 7 12 12 C 1.46500 * 119.99832 * 182.03554 * 10 8 7 13 13 C 1.53002 * 109.46900 * 90.00128 * 12 10 8 14 14 N 1.46500 * 109.46900 * 179.97438 * 13 12 10 15 15 C 1.36941 * 119.99924 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99792 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99933 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47586 * 59.99605 * 19 17 15 21 21 H 1.48503 * 109.47009 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46691 * 299.99699 * 19 17 15 23 23 C 1.39100 * 120.60562 * 0.53737 * 7 6 5 24 24 H 1.08999 * 109.46846 * 60.00310 * 1 2 3 25 25 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47523 * 300.00854 * 1 2 3 27 27 H 1.07999 * 120.35868 * 359.95711 * 4 3 2 28 28 H 1.08001 * 119.51890 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.46763 * 83.76915 * 11 10 8 30 30 H 1.09000 * 109.47249 * 203.76933 * 11 10 8 31 31 H 1.09003 * 109.47284 * 323.77254 * 11 10 8 32 32 H 1.09002 * 109.47166 * 209.99634 * 12 10 8 33 33 H 1.09000 * 109.47341 * 330.00068 * 12 10 8 34 34 H 1.08996 * 109.47465 * 299.99526 * 13 12 10 35 35 H 1.09000 * 109.47172 * 59.99837 * 13 12 10 36 36 H 0.97004 * 120.00182 * 359.97438 * 14 13 12 37 37 H 0.96997 * 120.00409 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.51002 * 179.75486 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2792 3.6591 0.0006 7 6 4.0261 2.5610 0.0049 8 6 5.5034 2.6780 0.0101 9 8 6.1910 1.6848 0.1414 10 7 6.0842 3.8860 -0.1307 11 6 5.2553 5.0885 -0.2442 12 6 7.5445 3.9964 -0.1703 13 6 8.0256 3.8808 -1.6181 14 7 9.4858 3.9918 -1.6577 15 6 10.1460 3.9164 -2.8552 16 1 9.5901 3.7746 -3.7702 17 6 11.5296 4.0221 -2.8928 18 7 12.2069 4.1954 -1.7777 19 14 12.4300 3.9199 -4.5263 20 1 11.9624 5.0109 -5.4185 21 1 13.8904 4.0596 -4.2960 22 1 12.1531 2.6070 -5.1628 23 6 3.4345 1.3021 -0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2243 2.3532 0.0003 28 1 1.3927 4.5192 0.0011 29 1 4.9771 5.4333 0.7517 30 1 5.8172 5.8702 -0.7555 31 1 4.3549 4.8568 -0.8132 32 1 7.8471 4.9610 0.2372 33 1 7.9856 3.1963 0.4242 34 1 7.7231 2.9162 -2.0256 35 1 7.5844 4.6808 -2.2125 36 1 9.9851 4.1188 -0.8358 37 1 13.1738 4.2689 -1.8039 38 1 4.0435 0.4101 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714742833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:53 Heat of formation + Delta-G solvation = 2.778405 kcal Electronic energy + Delta-G solvation = -21022.497844 eV Core-core repulsion = 17674.148161 eV Total energy + Delta-G solvation = -3348.349683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17486 -39.63723 -38.25168 -35.91826 -34.28884 -32.02870 -31.90991 -31.04628 -28.24723 -28.02011 -26.40044 -24.61715 -23.67462 -23.08910 -21.48256 -20.04063 -18.25013 -17.65494 -17.03538 -16.51298 -16.34370 -15.99539 -15.69469 -15.49809 -14.84479 -14.47928 -14.24153 -13.83669 -13.75180 -13.33224 -13.09056 -12.90072 -12.71341 -12.65699 -12.31078 -12.01589 -11.65164 -11.19125 -10.92896 -10.84361 -10.60825 -10.16307 -10.09261 -9.69549 -9.57495 -9.38521 -9.23338 -8.80989 -8.36511 -6.87141 -5.70222 -2.99276 0.39362 0.94593 2.55584 2.72548 3.15861 3.49444 3.53104 3.54812 3.65813 3.93435 4.21086 4.42581 4.60498 4.63566 4.66730 4.77423 4.81864 4.97298 5.28502 5.43274 5.48190 5.57260 5.66587 5.69970 5.72854 5.94690 5.98118 6.10767 6.21297 6.31825 6.66410 6.75349 6.81433 6.98484 7.43104 7.59032 7.75646 8.25963 8.48435 9.59107 10.15621 10.51045 11.52747 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032427 B = 0.003069 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.268300 B = 9120.431198 C = 9462.444342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C 0.163 3.837 4 C -0.247 4.247 5 C 0.129 3.871 6 N -0.473 5.473 7 C 0.124 3.876 8 C 0.562 3.438 9 O -0.525 6.525 10 N -0.587 5.587 11 C 0.076 3.924 12 C 0.105 3.895 13 C 0.143 3.857 14 N -0.730 5.730 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.144 4.144 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.142 0.858 28 H 0.166 0.834 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.545 -1.989 6.099 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.109 3.891 4 C -0.268 4.268 5 C -0.029 4.029 6 N -0.189 5.189 7 C -0.013 4.013 8 C 0.348 3.652 9 O -0.401 6.401 10 N -0.319 5.319 11 C -0.067 4.067 12 C -0.017 4.017 13 C 0.014 3.986 14 N -0.375 5.375 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.740 3.260 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.165 4.165 24 H 0.078 0.922 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.160 0.840 28 H 0.183 0.817 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -27.605 -1.954 5.999 28.317 hybrid contribution -0.124 -0.601 -0.650 0.894 sum -27.729 -2.555 5.349 28.355 Atomic orbital electron populations 1.23172 0.77560 1.04607 1.01685 1.86112 1.22013 1.25994 1.87717 1.19210 0.92101 0.84859 0.92887 1.22382 1.01706 0.93247 1.09460 1.22749 0.90202 0.97199 0.92777 1.68224 1.06658 1.30084 1.13917 1.21077 0.94557 0.88603 0.97082 1.17814 0.85572 0.83751 0.78112 1.90831 1.63198 1.36355 1.49683 1.47666 1.07557 1.06754 1.69888 1.22386 0.96105 0.85927 1.02273 1.21812 0.77392 1.03116 0.99417 1.20910 0.86552 0.98210 0.92889 1.42204 0.99670 1.88184 1.07436 1.19171 0.89565 1.41806 0.86320 0.91248 1.24747 0.96304 1.02916 0.97061 1.69651 1.06568 1.56818 1.25259 0.86233 0.78745 0.77857 0.83153 1.21282 1.21661 1.21248 1.21411 0.91976 0.99864 1.03276 0.92198 0.87679 0.92236 0.84019 0.81716 0.92745 0.91923 0.87706 0.90108 0.89527 0.95943 0.96266 0.78231 0.93454 0.82602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.84 101.05 0.99 1.10 16 2 O -0.31 -2.83 10.51 -18.96 -0.20 -3.03 16 3 C 0.16 1.65 6.73 -38.85 -0.26 1.38 16 4 C -0.25 -1.86 9.11 -39.19 -0.36 -2.22 16 5 C 0.13 1.04 11.17 -17.62 -0.20 0.84 16 6 N -0.47 -5.34 6.03 -9.87 -0.06 -5.40 16 7 C 0.12 1.70 6.62 -83.04 -0.55 1.15 16 8 C 0.56 9.58 7.66 -12.18 -0.09 9.49 16 9 O -0.52 -10.72 15.91 5.35 0.09 -10.64 16 10 N -0.59 -9.47 2.87 -182.56 -0.52 -10.00 16 11 C 0.08 0.95 9.31 59.84 0.56 1.50 16 12 C 0.10 1.93 5.51 -4.04 -0.02 1.91 16 13 C 0.14 3.18 6.58 -4.04 -0.03 3.15 16 14 N -0.73 -19.70 5.60 -59.91 -0.34 -20.04 16 15 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 18 N -0.93 -29.15 13.06 55.49 0.72 -28.42 16 19 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 C -0.14 -1.82 9.60 -38.89 -0.37 -2.20 16 24 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 25 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.19 7.71 -51.93 -0.40 -0.21 16 27 H 0.14 0.61 6.45 -52.49 -0.34 0.27 16 28 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.75 8.02 -51.93 -0.42 0.34 16 31 H 0.11 1.24 5.26 -52.13 -0.27 0.97 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.09 1.73 7.39 -51.93 -0.38 1.35 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.16 2.08 7.66 -52.48 -0.40 1.68 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -35.57 325.18 -6.02 -41.59 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.01 Total: 4.46 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.58 Total: 8.45 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.20 Total: -63.86 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.11 Total: -13.67 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.57 -6.02 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714742833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.368 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds