Wall clock time and date at job start Tue Mar 31 2020 01:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35752 * 117.00211 * 2 1 4 4 C 1.39207 * 120.81077 * 0.02562 * 3 2 1 5 5 C 1.38315 * 119.28735 * 179.97438 * 4 3 2 6 6 N 1.31616 * 120.97215 * 0.02562 * 5 4 3 7 7 C 1.32800 * 121.77599 * 359.72764 * 6 5 4 8 8 C 1.48186 * 119.69514 * 180.26820 * 7 6 5 9 9 O 1.21515 * 119.99815 * 173.05046 * 8 7 6 10 10 N 1.34773 * 120.00155 * 353.05257 * 8 7 6 11 11 C 1.46495 * 119.99958 * 2.03318 * 10 8 7 12 12 C 1.46500 * 119.99832 * 182.03554 * 10 8 7 13 13 C 1.53002 * 109.46900 * 90.00128 * 12 10 8 14 14 N 1.46500 * 109.46900 * 179.97438 * 13 12 10 15 15 C 1.36941 * 119.99924 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99792 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99933 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00163 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99946 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47586 * 59.99605 * 19 17 15 21 21 H 1.48503 * 109.47009 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46691 * 299.99699 * 19 17 15 23 23 C 1.39100 * 120.60562 * 0.53737 * 7 6 5 24 24 H 1.08999 * 109.46846 * 60.00310 * 1 2 3 25 25 H 1.09000 * 109.47427 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47523 * 300.00854 * 1 2 3 27 27 H 1.07999 * 120.35868 * 359.95711 * 4 3 2 28 28 H 1.08001 * 119.51890 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.46763 * 83.76915 * 11 10 8 30 30 H 1.09000 * 109.47249 * 203.76933 * 11 10 8 31 31 H 1.09003 * 109.47284 * 323.77254 * 11 10 8 32 32 H 1.09002 * 109.47166 * 209.99634 * 12 10 8 33 33 H 1.09000 * 109.47341 * 330.00068 * 12 10 8 34 34 H 1.08996 * 109.47465 * 299.99526 * 13 12 10 35 35 H 1.09000 * 109.47172 * 59.99837 * 13 12 10 36 36 H 0.97004 * 120.00182 * 359.97438 * 14 13 12 37 37 H 0.96997 * 120.00409 * 179.97438 * 18 17 15 38 38 H 1.08007 * 120.51002 * 179.75486 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 0.0005 5 6 1.9643 3.6029 0.0011 6 7 3.2792 3.6591 0.0006 7 6 4.0261 2.5610 0.0049 8 6 5.5034 2.6780 0.0101 9 8 6.1910 1.6848 0.1414 10 7 6.0842 3.8860 -0.1307 11 6 5.2553 5.0885 -0.2442 12 6 7.5445 3.9964 -0.1703 13 6 8.0256 3.8808 -1.6181 14 7 9.4858 3.9918 -1.6577 15 6 10.1460 3.9164 -2.8552 16 1 9.5901 3.7746 -3.7702 17 6 11.5296 4.0221 -2.8928 18 7 12.2069 4.1954 -1.7777 19 14 12.4300 3.9199 -4.5263 20 1 11.9624 5.0109 -5.4185 21 1 13.8904 4.0596 -4.2960 22 1 12.1531 2.6070 -5.1628 23 6 3.4345 1.3021 -0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.2243 2.3532 0.0003 28 1 1.3927 4.5192 0.0011 29 1 4.9771 5.4333 0.7517 30 1 5.8172 5.8702 -0.7555 31 1 4.3549 4.8568 -0.8132 32 1 7.8471 4.9610 0.2372 33 1 7.9856 3.1963 0.4242 34 1 7.7231 2.9162 -2.0256 35 1 7.5844 4.6808 -2.2125 36 1 9.9851 4.1188 -0.8358 37 1 13.1738 4.2689 -1.8039 38 1 4.0435 0.4101 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714742833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:53 Heat of formation + Delta-G solvation = -23.129376 kcal Electronic energy + Delta-G solvation = -21023.621289 eV Core-core repulsion = 17674.148161 eV Total energy + Delta-G solvation = -3349.473129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03948 -40.69619 -39.08445 -37.48937 -36.12604 -33.55617 -32.72135 -32.43406 -29.86167 -28.59253 -27.53088 -26.21374 -24.62698 -24.37640 -23.13079 -21.15592 -19.39759 -19.04991 -18.45955 -17.37180 -17.22619 -17.02537 -16.79112 -16.61476 -16.37543 -15.66284 -15.40988 -15.31560 -15.02098 -14.81820 -14.43418 -14.42025 -13.90440 -13.43545 -13.20516 -13.08223 -12.85271 -12.78004 -12.49443 -12.36814 -12.24566 -12.17045 -11.88753 -11.42471 -10.98420 -10.39908 -10.30102 -9.98835 -9.67349 -9.08503 -7.98336 -5.29757 -0.48212 0.19922 1.45387 1.50253 1.55924 1.59970 1.72402 2.20705 2.55300 2.74660 3.00145 3.34418 3.58891 3.71642 3.93547 3.99724 4.04481 4.17494 4.21306 4.33568 4.39345 4.47790 4.48596 4.55003 4.69898 4.76097 4.88718 4.93817 4.98926 5.03383 5.17543 5.38205 5.44311 5.60307 6.15248 6.22561 6.26281 6.67774 7.00394 7.28815 7.99401 8.26133 9.24909 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032427 B = 0.003069 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.268300 B = 9120.431198 C = 9462.444342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.330 6.330 3 C 0.159 3.841 4 C -0.224 4.224 5 C 0.134 3.866 6 N -0.480 5.480 7 C 0.105 3.895 8 C 0.554 3.446 9 O -0.576 6.576 10 N -0.587 5.587 11 C 0.076 3.924 12 C 0.119 3.881 13 C 0.150 3.850 14 N -0.742 5.742 15 C -0.254 4.254 16 H 0.073 0.927 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.980 3.020 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.280 1.280 23 C -0.165 4.165 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.185 0.815 28 H 0.211 0.789 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.064 0.936 34 H -0.001 1.001 35 H 0.031 0.969 36 H 0.376 0.624 37 H 0.254 0.746 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.816 -0.644 5.453 32.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.106 3.894 4 C -0.244 4.244 5 C -0.025 4.025 6 N -0.197 5.197 7 C -0.031 4.031 8 C 0.341 3.659 9 O -0.455 6.455 10 N -0.317 5.317 11 C -0.065 4.065 12 C -0.005 4.005 13 C 0.023 3.977 14 N -0.386 5.386 15 C -0.386 4.386 16 H 0.091 0.909 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.808 3.192 20 H -0.198 1.198 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.188 4.188 24 H 0.095 0.905 25 H 0.137 0.863 26 H 0.096 0.904 27 H 0.202 0.798 28 H 0.228 0.772 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.017 0.983 35 H 0.049 0.951 36 H 0.209 0.791 37 H 0.063 0.937 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -30.944 -0.587 5.345 31.408 hybrid contribution 0.671 -1.059 -0.423 1.323 sum -30.274 -1.647 4.922 30.715 Atomic orbital electron populations 1.23549 0.74950 1.06287 1.03317 1.86097 1.24707 1.25850 1.87482 1.19244 0.91207 0.86327 0.92664 1.22826 1.03619 0.91697 1.06256 1.23530 0.89026 0.99213 0.90689 1.68122 1.08309 1.28815 1.14427 1.20479 0.92672 0.89795 1.00161 1.18447 0.87288 0.83170 0.76949 1.90785 1.64809 1.37946 1.51959 1.47765 1.06659 1.07911 1.69403 1.22604 0.95925 0.84394 1.03599 1.21481 0.79240 1.03249 0.96511 1.20923 0.84251 0.97060 0.95512 1.42373 1.01496 1.88148 1.06546 1.19564 0.90268 1.41476 0.87252 0.90921 1.25655 0.97097 1.02927 1.00860 1.69813 1.06609 1.57881 1.27486 0.85126 0.77070 0.78203 0.78819 1.19847 1.21622 1.20633 1.21314 0.93648 0.98811 1.05008 0.90520 0.86287 0.90423 0.79791 0.77211 0.91065 0.91330 0.86622 0.88095 0.91778 0.98295 0.95096 0.79147 0.93698 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.62 10.51 -90.77 -0.95 -6.57 16 3 C 0.16 2.99 6.73 22.74 0.15 3.15 16 4 C -0.22 -2.46 9.11 22.52 0.21 -2.26 16 5 C 0.13 1.60 11.17 84.74 0.95 2.55 16 6 N -0.48 -9.88 6.03 -185.13 -1.12 -11.00 16 7 C 0.10 2.91 6.62 41.85 0.28 3.19 16 8 C 0.55 19.85 7.66 86.89 0.67 20.51 16 9 O -0.58 -25.49 15.91 -3.76 -0.06 -25.55 16 10 N -0.59 -19.24 2.87 -849.80 -2.44 -21.68 16 11 C 0.08 1.78 9.31 127.77 1.19 2.97 16 12 C 0.12 4.51 5.51 86.38 0.48 4.99 16 13 C 0.15 6.88 6.58 86.38 0.57 7.44 16 14 N -0.74 -41.11 5.60 -343.45 -1.92 -43.04 16 15 C -0.25 -15.17 9.99 84.03 0.84 -14.33 16 16 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 18 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 19 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 20 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 C -0.17 -4.37 9.60 22.72 0.22 -4.15 16 24 H 0.08 0.20 7.71 -2.39 -0.02 0.19 16 25 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.08 0.18 7.71 -2.39 -0.02 0.17 16 27 H 0.18 0.45 6.45 -2.91 -0.02 0.43 16 28 H 0.21 0.59 8.06 -2.91 -0.02 0.56 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.52 8.02 -2.39 -0.02 1.51 16 31 H 0.12 2.51 5.26 -2.79 -0.01 2.50 16 32 H 0.10 3.41 8.07 -2.39 -0.02 3.39 16 33 H 0.06 2.73 7.39 -2.39 -0.02 2.71 16 34 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.38 21.68 7.67 -92.71 -0.71 20.97 16 37 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.13 3.97 7.66 -2.91 -0.02 3.95 16 Total: -1.00 -80.61 325.18 3.30 -77.31 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.37 Total: 20.43 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 7.12 Total: 21.33 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -5.20 Total: -136.76 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.01 Total: -32.12 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -80.61 3.30 -77.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714742833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.177 kcal (2) G-P(sol) polarization free energy of solvation -80.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds