Wall clock time and date at job start Tue Mar 31 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36936 * 119.99807 * 2 1 4 4 H 1.08001 * 119.99805 * 212.71081 * 3 2 1 5 5 C 1.38814 * 120.00295 * 32.70115 * 3 2 1 6 6 N 1.31612 * 119.99789 * 6.14322 * 5 3 2 7 7 Si 1.86799 * 120.00164 * 186.13991 * 5 3 2 8 8 H 1.48496 * 109.47285 * 59.99726 * 7 5 3 9 9 H 1.48501 * 109.47357 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47050 * 300.00346 * 7 5 3 11 11 C 1.46493 * 120.00198 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47315 * 89.99970 * 11 2 1 13 13 N 1.46502 * 109.47197 * 180.02562 * 12 11 2 14 14 C 1.46495 * 120.00016 * 269.99897 * 13 12 11 15 15 C 1.34778 * 120.00095 * 90.00079 * 13 12 11 16 16 O 1.21517 * 120.00035 * 2.35553 * 15 13 12 17 17 C 1.48150 * 119.99839 * 182.36510 * 15 13 12 18 18 C 1.39166 * 119.68880 * 172.38889 * 17 15 13 19 19 C 1.38740 * 119.18698 * 179.97438 * 18 17 15 20 20 C 1.38377 * 118.55869 * 359.73398 * 19 18 17 21 21 C 1.39239 * 119.30418 * 0.50458 * 20 19 18 22 22 O 1.35671 * 119.61801 * 179.75102 * 21 20 19 23 23 N 1.31932 * 120.76861 * 359.48216 * 21 20 19 24 24 H 1.09001 * 109.47334 * 265.17743 * 1 2 3 25 25 H 1.09001 * 109.47698 * 25.17908 * 1 2 3 26 26 H 1.09004 * 109.47116 * 145.17578 * 1 2 3 27 27 H 0.97003 * 119.99818 * 180.02562 * 6 5 3 28 28 H 1.08997 * 109.47136 * 329.99966 * 11 2 1 29 29 H 1.09000 * 109.47273 * 210.00201 * 11 2 1 30 30 H 1.08997 * 109.47023 * 59.99926 * 12 11 2 31 31 H 1.09000 * 109.47142 * 299.99756 * 12 11 2 32 32 H 1.08995 * 109.47411 * 263.71226 * 14 13 12 33 33 H 1.09001 * 109.47069 * 23.71217 * 14 13 12 34 34 H 1.09001 * 109.47337 * 143.70976 * 14 13 12 35 35 H 1.07999 * 120.40974 * 359.97438 * 18 17 15 36 36 H 1.08004 * 120.72326 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.35028 * 180.28179 * 20 19 18 38 38 H 0.96699 * 114.00238 * 269.73796 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1011 1.2601 -0.5055 5 6 1.6206 2.2928 0.6495 6 7 0.5232 2.1731 1.3661 7 14 2.4662 3.9523 0.5063 8 1 2.5139 4.3622 -0.9201 9 1 1.7086 4.9630 1.2872 10 1 3.8489 3.8509 1.0386 11 6 2.1975 -1.2686 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4411 14 6 4.6495 -2.9806 -1.4409 15 6 2.5102 -4.1470 -1.4407 16 8 1.2958 -4.1470 -1.4842 17 6 3.2495 -5.4297 -1.3872 18 6 2.5502 -6.6222 -1.2269 19 6 3.2531 -7.8174 -1.1787 20 6 4.6312 -7.7798 -1.2980 21 6 5.2687 -6.5514 -1.4512 22 8 6.6200 -6.5067 -1.5636 23 7 4.5735 -5.4309 -1.4935 24 1 -0.3634 -0.0864 1.0240 25 1 -0.3634 0.9300 -0.4372 26 1 -0.3633 -0.8436 -0.5869 27 1 0.1533 2.9467 1.8197 28 1 1.6084 -2.0281 0.5147 29 1 3.1499 -1.1381 0.5144 30 1 3.0415 -0.9516 -1.9558 31 1 1.5001 -1.8416 -1.9554 32 1 5.0129 -3.0937 -2.4622 33 1 5.0131 -2.0396 -1.0280 34 1 5.0124 -3.8088 -0.8323 35 1 1.4737 -6.6173 -1.1412 36 1 2.7355 -8.7572 -1.0546 37 1 5.2066 -8.6932 -1.2689 38 1 7.0822 -6.4169 -0.7190 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715793721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:37 Heat of formation + Delta-G solvation = -15.719611 kcal Electronic energy + Delta-G solvation = -21511.146799 eV Core-core repulsion = 18161.994982 eV Total energy + Delta-G solvation = -3349.151817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.93773 -40.39107 -38.05042 -37.69473 -36.51800 -33.95308 -33.27627 -31.56421 -30.18212 -27.97978 -27.63028 -26.25378 -24.58804 -24.15087 -22.53852 -21.06875 -19.44897 -18.81165 -18.48997 -17.60610 -17.29837 -16.95188 -16.75430 -16.54083 -16.07071 -15.54624 -15.38028 -14.76096 -14.66079 -14.27597 -14.04776 -13.94949 -13.80555 -13.29844 -13.11899 -13.04647 -12.84677 -12.75410 -12.56092 -12.49243 -12.22572 -11.97362 -11.65321 -11.49527 -10.99673 -10.67100 -10.17080 -10.10564 -9.70923 -8.65776 -7.87313 -5.46619 -0.44985 0.10752 1.47250 1.50420 1.56946 1.60821 1.86989 2.48513 2.52444 2.69480 3.28944 3.30441 3.72601 3.80575 3.93001 4.04670 4.09437 4.33907 4.40082 4.45801 4.53978 4.62586 4.80678 4.84964 4.85758 4.99222 5.04999 5.08946 5.16689 5.27038 5.44913 5.55137 5.57227 5.63125 6.28993 6.35006 6.52267 6.76011 7.02924 7.12215 7.77917 8.30937 9.17811 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031790 B = 0.003639 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.574378 B = 7691.762007 C = 8343.659333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.614 5.614 3 C -0.276 4.276 4 H 0.072 0.928 5 C -0.045 4.045 6 N -0.938 5.938 7 Si 0.976 3.024 8 H -0.275 1.275 9 H -0.294 1.294 10 H -0.271 1.271 11 C 0.151 3.849 12 C 0.109 3.891 13 N -0.591 5.591 14 C 0.083 3.917 15 C 0.552 3.448 16 O -0.573 6.573 17 C 0.083 3.917 18 C -0.128 4.128 19 C -0.052 4.052 20 C -0.149 4.149 21 C 0.296 3.704 22 O -0.486 6.486 23 N -0.489 5.489 24 H -0.003 1.003 25 H 0.029 0.971 26 H 0.016 0.984 27 H 0.251 0.749 28 H 0.026 0.974 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.148 0.852 36 H 0.187 0.813 37 H 0.181 0.819 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.159 -22.663 -4.569 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.338 5.338 3 C -0.406 4.406 4 H 0.090 0.910 5 C -0.241 4.241 6 N -0.583 5.583 7 Si 0.803 3.197 8 H -0.200 1.200 9 H -0.220 1.220 10 H -0.196 1.196 11 C 0.023 3.977 12 C -0.016 4.016 13 N -0.321 5.321 14 C -0.059 4.059 15 C 0.340 3.660 16 O -0.452 6.452 17 C -0.053 4.053 18 C -0.150 4.150 19 C -0.078 4.078 20 C -0.170 4.170 21 C 0.115 3.885 22 O -0.296 6.296 23 N -0.212 5.212 24 H 0.015 0.985 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.166 0.834 36 H 0.204 0.796 37 H 0.199 0.801 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 11.816 -21.776 -5.184 25.312 hybrid contribution -0.283 0.705 0.645 0.997 sum 11.533 -21.072 -4.538 24.446 Atomic orbital electron populations 1.20493 0.83257 0.96675 0.96335 1.43952 1.01834 1.01443 1.86554 1.19467 1.04737 0.88606 1.27763 0.91018 1.26127 0.98567 1.02973 0.96463 1.70192 1.23360 1.30135 1.34601 0.85227 0.78059 0.78674 0.77736 1.20027 1.21989 1.19629 1.20993 0.95586 0.86960 0.94148 1.22075 0.96500 0.83512 0.99539 1.47921 1.09056 1.05132 1.69976 1.22444 0.76480 1.03849 1.03141 1.18501 0.86462 0.84113 0.76901 1.90759 1.14496 1.87434 1.52558 1.20586 0.89002 0.93555 1.02145 1.22285 1.02737 0.91960 0.97987 1.21976 0.93516 0.98871 0.93393 1.22727 0.95900 0.99368 0.99029 1.19602 0.85561 0.88224 0.95124 1.84775 1.12305 1.95020 1.37527 1.67480 1.07508 1.32078 1.14120 0.98512 0.95161 0.96561 0.93982 0.95571 0.93268 0.90081 0.92378 0.92315 0.91615 0.87013 0.83426 0.79576 0.80138 0.71609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.63 9.00 127.77 1.15 10.78 16 2 N -0.61 -33.16 2.89 -726.97 -2.10 -35.26 16 3 C -0.28 -15.55 9.56 84.03 0.80 -14.75 16 4 H 0.07 3.84 7.84 -2.91 -0.02 3.81 16 5 C -0.05 -2.59 5.16 84.86 0.44 -2.16 16 6 N -0.94 -57.16 11.04 21.65 0.24 -56.92 16 7 Si 0.98 45.21 29.56 68.60 2.03 47.23 16 8 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 9 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 C 0.15 6.87 6.01 86.38 0.52 7.39 16 12 C 0.11 4.32 5.72 86.38 0.49 4.82 16 13 N -0.59 -20.15 2.87 -849.87 -2.44 -22.59 16 14 C 0.08 2.22 9.30 127.77 1.19 3.41 16 15 C 0.55 19.30 7.66 86.88 0.67 19.96 16 16 O -0.57 -23.78 15.91 -3.77 -0.06 -23.84 16 17 C 0.08 2.23 6.62 41.85 0.28 2.50 16 18 C -0.13 -2.63 9.62 22.61 0.22 -2.41 16 19 C -0.05 -0.61 10.16 22.42 0.23 -0.38 16 20 C -0.15 -1.61 10.05 22.54 0.23 -1.38 16 21 C 0.30 4.92 7.74 84.92 0.66 5.58 16 22 O -0.49 -6.25 13.56 -89.88 -1.22 -7.46 16 23 N -0.49 -11.33 6.07 -298.19 -1.81 -13.14 16 24 H 0.00 -0.20 7.74 -2.39 -0.02 -0.22 16 25 H 0.03 1.71 7.17 -2.39 -0.02 1.69 16 26 H 0.02 0.79 8.11 -2.39 -0.02 0.78 16 27 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.03 1.23 8.07 -2.39 -0.02 1.21 16 29 H 0.05 2.19 8.04 -2.39 -0.02 2.17 16 30 H 0.08 3.12 8.07 -2.39 -0.02 3.11 16 31 H 0.06 2.54 7.39 -2.39 -0.02 2.52 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.71 8.02 -2.39 -0.02 1.69 16 34 H 0.11 2.78 5.26 -2.69 -0.01 2.77 16 35 H 0.15 3.10 7.65 -2.91 -0.02 3.07 16 36 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 37 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.42 1.22 9.06 -74.06 -0.67 0.55 16 Total: -1.00 -76.40 324.81 1.90 -74.50 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.40 Total: 4.11 kcal Atomic # 6 Polarization: 26.50 SS G_CDS: 6.86 Total: 33.37 kcal Atomic # 7 Polarization: -121.79 SS G_CDS: -6.11 Total: -127.90 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.28 Total: -31.30 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -76.40 1.90 -74.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715793721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.778 kcal (2) G-P(sol) polarization free energy of solvation -76.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds