Wall clock time and date at job start Tue Mar 31 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99882 * 2 1 4 4 C 1.53008 * 109.47073 * 270.00198 * 3 2 1 5 5 C 1.53003 * 109.47101 * 180.02562 * 4 3 2 6 6 N 1.46492 * 109.47217 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00103 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99743 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99989 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99847 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00128 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47169 * 89.99737 * 11 9 7 13 13 H 1.48491 * 109.47316 * 210.00037 * 11 9 7 14 14 H 1.48508 * 109.46852 * 329.99920 * 11 9 7 15 15 C 1.34769 * 120.00379 * 180.02562 * 2 1 3 16 16 O 1.21585 * 120.00432 * 184.81463 * 15 2 1 17 17 C 1.47617 * 119.99723 * 4.80672 * 15 2 1 18 18 C 1.40287 * 120.50158 * 321.68027 * 17 15 2 19 19 C 1.37946 * 118.35831 * 180.02562 * 18 17 15 20 20 C 1.39170 * 119.26637 * 359.97438 * 19 18 17 21 21 O 1.35495 * 119.52598 * 179.97438 * 20 19 18 22 22 N 1.32408 * 120.94706 * 359.97438 * 20 19 18 23 23 C 1.31663 * 121.79890 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.47061 * 264.92500 * 1 2 3 25 25 H 1.09007 * 109.47074 * 24.92043 * 1 2 3 26 26 H 1.08998 * 109.47430 * 144.92399 * 1 2 3 27 27 H 1.08995 * 109.47528 * 30.00048 * 3 2 1 28 28 H 1.08996 * 109.47566 * 150.00367 * 3 2 1 29 29 H 1.08999 * 109.46883 * 299.99535 * 4 3 2 30 30 H 1.08992 * 109.46931 * 60.00171 * 4 3 2 31 31 H 1.09006 * 109.46962 * 300.00030 * 5 4 3 32 32 H 1.09001 * 109.47538 * 59.99609 * 5 4 3 33 33 H 0.97003 * 119.99898 * 0.02562 * 6 5 4 34 34 H 0.97007 * 119.99799 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.81670 * 0.03814 * 18 17 15 36 36 H 1.08007 * 120.36766 * 179.97438 * 19 18 17 37 37 H 0.96702 * 114.00420 * 270.00086 * 21 20 19 38 38 H 1.07994 * 119.68819 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 6 3.2179 3.0352 -1.4426 6 7 3.4626 3.4578 -2.8237 7 6 4.1358 4.6237 -3.0740 8 1 4.4868 5.2315 -2.2531 9 6 4.3672 5.0245 -4.3827 10 7 3.9390 4.2840 -5.3831 11 14 5.2862 6.6145 -4.7241 12 1 6.7418 6.3353 -4.8148 13 1 4.8126 7.1945 -6.0064 14 1 5.0346 7.5780 -3.6223 15 6 2.1389 -1.1671 -0.0005 16 8 3.3515 -1.1690 0.0879 17 6 1.4047 -2.4432 -0.1082 18 6 0.1764 -2.6155 0.5471 19 6 -0.4717 -3.8263 0.4168 20 6 0.1086 -4.8290 -0.3543 21 8 -0.5230 -6.0205 -0.4855 22 7 1.2692 -4.6354 -0.9616 23 6 1.9216 -3.4959 -0.8643 24 1 -0.3633 -0.0909 1.0236 25 1 -0.3633 0.9320 -0.4330 26 1 -0.3634 -0.8410 -0.5905 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5137 29 1 3.0415 0.9509 -1.9564 30 1 1.5000 1.8408 -1.9563 31 1 2.6292 3.7951 -0.9286 32 1 4.1704 2.9045 -0.9289 33 1 3.1470 2.9121 -3.5610 34 1 4.1010 4.5639 -6.2977 35 1 -0.2514 -1.8197 1.1389 36 1 -1.4189 -3.9942 0.9078 37 1 -0.2826 -6.6697 0.1898 38 1 2.8657 -3.3748 -1.3744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733141115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:52 Heat of formation + Delta-G solvation = -15.473144 kcal Electronic energy + Delta-G solvation = -20787.378317 eV Core-core repulsion = 17438.237188 eV Total energy + Delta-G solvation = -3349.141129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.19207 -39.66607 -37.38406 -36.29207 -34.96219 -33.29031 -32.13186 -30.93478 -29.63873 -27.25311 -25.78608 -24.09550 -23.96134 -22.64193 -20.99737 -19.93684 -19.35978 -17.68682 -17.23434 -17.04346 -16.49509 -16.20657 -15.39037 -15.00486 -14.80984 -14.48031 -14.31610 -13.96425 -13.49997 -13.27887 -13.16226 -13.09016 -12.77860 -12.43931 -12.27081 -11.95513 -11.92088 -10.94084 -10.84011 -10.76007 -10.43251 -10.37827 -10.25422 -10.05011 -9.78347 -9.69582 -9.34246 -8.84725 -8.79268 -6.89669 -5.73710 -3.02588 0.24003 0.73352 2.43476 2.77715 3.07871 3.39544 3.45894 3.50480 3.52387 4.06619 4.27124 4.34247 4.54261 4.61831 4.76587 4.85236 5.01745 5.17013 5.23087 5.33005 5.40594 5.43582 5.54018 5.58617 5.66364 5.84902 5.97101 6.05364 6.28215 6.38164 6.43932 6.85523 6.87432 6.98661 7.14801 7.43930 7.72273 7.94652 8.45165 9.55972 10.14384 10.48828 11.49356 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033958 B = 0.002809 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.345084 B = 9966.652442 C =10266.146167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.118 3.882 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.562 3.438 16 O -0.523 6.523 17 C -0.190 4.190 18 C -0.036 4.036 19 C -0.193 4.193 20 C 0.329 3.671 21 O -0.482 6.482 22 N -0.505 5.505 23 C 0.183 3.817 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.021 0.979 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.404 0.596 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 -17.507 16.071 27.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C -0.004 4.004 4 C -0.179 4.179 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.349 3.651 16 O -0.399 6.399 17 C -0.196 4.196 18 C -0.062 4.062 19 C -0.215 4.215 20 C 0.150 3.850 21 O -0.289 6.289 22 N -0.223 5.223 23 C 0.025 3.975 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.263 0.737 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.216 -17.790 15.191 26.391 hybrid contribution 0.045 1.056 0.256 1.088 sum -12.171 -16.734 15.447 25.822 Atomic orbital electron populations 1.22173 0.79770 1.04169 1.01264 1.47777 1.06997 1.06241 1.72935 1.21579 0.97687 0.82903 0.98241 1.22077 1.01201 0.99118 0.95501 1.20535 0.96049 0.91785 0.88779 1.42353 1.68320 1.26030 1.01082 1.19245 1.27824 0.98153 0.91811 0.91133 1.24762 1.01723 0.99096 0.95569 1.69669 1.51475 1.38990 0.98165 0.86166 0.79548 0.83071 0.77273 1.21684 1.21776 1.20757 1.17984 0.87005 0.83137 0.76958 1.90847 1.13239 1.87004 1.48853 1.21018 0.97358 0.96953 1.04240 1.22050 0.91987 0.97003 0.95133 1.22056 1.03125 0.94449 1.01820 1.19460 0.87821 0.87335 0.90405 1.84723 1.64356 1.22710 1.57151 1.67285 1.08472 1.24862 1.21683 1.22748 0.97559 0.85113 0.92071 0.92209 0.90039 0.90868 0.90147 0.89349 0.91544 0.91896 0.96374 0.96140 0.78313 0.93520 0.82943 0.83476 0.73715 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 8.87 59.85 0.53 1.04 16 2 N -0.61 -6.93 2.87 -182.78 -0.53 -7.45 16 3 C 0.12 1.53 5.42 -4.04 -0.02 1.51 16 4 C -0.14 -2.33 5.65 -26.73 -0.15 -2.48 16 5 C 0.16 3.22 6.26 -4.04 -0.03 3.19 16 6 N -0.73 -19.33 5.60 -59.91 -0.34 -19.67 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 10 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 11 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.56 7.39 7.37 -12.44 -0.09 7.30 16 16 O -0.52 -8.90 16.46 5.29 0.09 -8.81 16 17 C -0.19 -2.02 5.27 -104.82 -0.55 -2.57 16 18 C -0.04 -0.27 7.68 -38.92 -0.30 -0.57 16 19 C -0.19 -1.34 10.02 -39.34 -0.39 -1.73 16 20 C 0.33 3.02 7.74 -16.96 -0.13 2.89 16 21 O -0.48 -3.64 13.55 -18.18 -0.25 -3.88 16 22 N -0.50 -5.81 10.37 -12.97 -0.13 -5.94 16 23 C 0.18 2.09 10.79 -17.14 -0.18 1.90 16 24 H 0.06 0.29 6.86 -51.93 -0.36 -0.07 16 25 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 26 H 0.07 0.51 5.83 -51.93 -0.30 0.20 16 27 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.09 1.26 7.36 -51.93 -0.38 0.88 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.63 7.67 -40.82 -0.31 10.31 16 34 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 35 H 0.15 0.75 5.29 -52.49 -0.28 0.47 16 36 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 37 H 0.40 0.94 9.06 45.56 0.41 1.35 16 38 H 0.17 1.91 8.05 -52.49 -0.42 1.48 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -36.79 326.35 -6.24 -43.03 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.14 Total: 5.38 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.57 Total: 2.88 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.27 Total: -61.31 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.16 Total: -12.70 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.79 -6.24 -43.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733141115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.553 kcal (2) G-P(sol) polarization free energy of solvation -36.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds