Wall clock time and date at job start Tue Mar 31 2020 01:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99882 * 2 1 4 4 C 1.53008 * 109.47073 * 270.00198 * 3 2 1 5 5 C 1.53003 * 109.47101 * 180.02562 * 4 3 2 6 6 N 1.46492 * 109.47217 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00103 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99743 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99989 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99847 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00128 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47169 * 89.99737 * 11 9 7 13 13 H 1.48491 * 109.47316 * 210.00037 * 11 9 7 14 14 H 1.48508 * 109.46852 * 329.99920 * 11 9 7 15 15 C 1.34769 * 120.00379 * 180.02562 * 2 1 3 16 16 O 1.21585 * 120.00432 * 184.81463 * 15 2 1 17 17 C 1.47617 * 119.99723 * 4.80672 * 15 2 1 18 18 C 1.40287 * 120.50158 * 321.68027 * 17 15 2 19 19 C 1.37946 * 118.35831 * 180.02562 * 18 17 15 20 20 C 1.39170 * 119.26637 * 359.97438 * 19 18 17 21 21 O 1.35495 * 119.52598 * 179.97438 * 20 19 18 22 22 N 1.32408 * 120.94706 * 359.97438 * 20 19 18 23 23 C 1.31663 * 121.79890 * 0.02562 * 22 20 19 24 24 H 1.09001 * 109.47061 * 264.92500 * 1 2 3 25 25 H 1.09007 * 109.47074 * 24.92043 * 1 2 3 26 26 H 1.08998 * 109.47430 * 144.92399 * 1 2 3 27 27 H 1.08995 * 109.47528 * 30.00048 * 3 2 1 28 28 H 1.08996 * 109.47566 * 150.00367 * 3 2 1 29 29 H 1.08999 * 109.46883 * 299.99535 * 4 3 2 30 30 H 1.08992 * 109.46931 * 60.00171 * 4 3 2 31 31 H 1.09006 * 109.46962 * 300.00030 * 5 4 3 32 32 H 1.09001 * 109.47538 * 59.99609 * 5 4 3 33 33 H 0.97003 * 119.99898 * 0.02562 * 6 5 4 34 34 H 0.97007 * 119.99799 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.81670 * 0.03814 * 18 17 15 36 36 H 1.08007 * 120.36766 * 179.97438 * 19 18 17 37 37 H 0.96702 * 114.00420 * 270.00086 * 21 20 19 38 38 H 1.07994 * 119.68819 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 6 3.2179 3.0352 -1.4426 6 7 3.4626 3.4578 -2.8237 7 6 4.1358 4.6237 -3.0740 8 1 4.4868 5.2315 -2.2531 9 6 4.3672 5.0245 -4.3827 10 7 3.9390 4.2840 -5.3831 11 14 5.2862 6.6145 -4.7241 12 1 6.7418 6.3353 -4.8148 13 1 4.8126 7.1945 -6.0064 14 1 5.0346 7.5780 -3.6223 15 6 2.1389 -1.1671 -0.0005 16 8 3.3515 -1.1690 0.0879 17 6 1.4047 -2.4432 -0.1082 18 6 0.1764 -2.6155 0.5471 19 6 -0.4717 -3.8263 0.4168 20 6 0.1086 -4.8290 -0.3543 21 8 -0.5230 -6.0205 -0.4855 22 7 1.2692 -4.6354 -0.9616 23 6 1.9216 -3.4959 -0.8643 24 1 -0.3633 -0.0909 1.0236 25 1 -0.3633 0.9320 -0.4330 26 1 -0.3634 -0.8410 -0.5905 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5137 29 1 3.0415 0.9509 -1.9564 30 1 1.5000 1.8408 -1.9563 31 1 2.6292 3.7951 -0.9286 32 1 4.1704 2.9045 -0.9289 33 1 3.1470 2.9121 -3.5610 34 1 4.1010 4.5639 -6.2977 35 1 -0.2514 -1.8197 1.1389 36 1 -1.4189 -3.9942 0.9078 37 1 -0.2826 -6.6697 0.1898 38 1 2.8657 -3.3748 -1.3744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733141115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:51 Heat of formation + Delta-G solvation = -46.179121 kcal Electronic energy + Delta-G solvation = -20788.709828 eV Core-core repulsion = 17438.237188 eV Total energy + Delta-G solvation = -3350.472641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96337 -40.54023 -38.04773 -37.54664 -36.52616 -34.44586 -33.53400 -31.97813 -31.08372 -28.12709 -27.14909 -25.39867 -24.66686 -24.06576 -22.54534 -20.86128 -19.96280 -19.16786 -18.51457 -18.04859 -17.29854 -17.06486 -16.62807 -16.30377 -16.01723 -15.51688 -15.43615 -15.27112 -14.86609 -14.67067 -14.18905 -13.96640 -13.61552 -13.51122 -13.37119 -12.98493 -12.83549 -12.76901 -12.72366 -12.42035 -12.06611 -11.83257 -11.81497 -11.27091 -10.97645 -10.95644 -10.54154 -10.09262 -9.73134 -9.03765 -7.97287 -5.27377 -0.47289 0.09201 1.46091 1.49150 1.50857 1.57544 1.90859 2.43424 2.55228 2.69329 3.33170 3.36433 3.58287 3.71901 3.84453 3.93248 4.02077 4.18658 4.23324 4.33651 4.49420 4.57654 4.60973 4.65844 4.73049 4.78548 4.88339 4.89498 4.93579 5.26007 5.29438 5.35118 5.47292 5.48791 6.24349 6.24887 6.53251 6.77945 6.98783 7.30278 8.05840 8.28697 9.26652 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033958 B = 0.002809 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.345084 B = 9966.652442 C =10266.146167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.604 5.604 3 C 0.127 3.873 4 C -0.124 4.124 5 C 0.154 3.846 6 N -0.751 5.751 7 C -0.248 4.248 8 H 0.079 0.921 9 C -0.080 4.080 10 N -0.972 5.972 11 Si 0.979 3.021 12 H -0.288 1.288 13 H -0.293 1.293 14 H -0.265 1.265 15 C 0.558 3.442 16 O -0.576 6.576 17 C -0.202 4.202 18 C -0.021 4.021 19 C -0.176 4.176 20 C 0.322 3.678 21 O -0.490 6.490 22 N -0.536 5.536 23 C 0.165 3.835 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.015 0.985 33 H 0.372 0.628 34 H 0.252 0.748 35 H 0.187 0.813 36 H 0.186 0.814 37 H 0.425 0.575 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.380 -17.076 18.183 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.334 5.334 3 C 0.004 3.996 4 C -0.163 4.163 5 C 0.028 3.972 6 N -0.393 5.393 7 C -0.380 4.380 8 H 0.097 0.903 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.807 3.193 12 H -0.215 1.215 13 H -0.220 1.220 14 H -0.190 1.190 15 C 0.346 3.654 16 O -0.456 6.456 17 C -0.208 4.208 18 C -0.046 4.046 19 C -0.197 4.197 20 C 0.143 3.857 21 O -0.301 6.301 22 N -0.256 5.256 23 C 0.008 3.992 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.133 0.867 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.204 0.796 36 H 0.204 0.796 37 H 0.288 0.712 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.665 -17.372 17.366 28.608 hybrid contribution 0.713 0.812 -0.346 1.135 sum -13.952 -16.560 17.019 27.542 Atomic orbital electron populations 1.22530 0.76824 1.04964 1.03883 1.47843 1.08770 1.05012 1.71816 1.21403 0.98208 0.84564 0.95469 1.21892 1.00176 0.96210 0.98023 1.20712 0.96529 0.94040 0.85948 1.42627 1.68192 1.25453 1.03039 1.19691 1.27268 0.98829 0.92202 0.90343 1.25667 1.03243 1.02770 0.95466 1.69837 1.53218 1.40947 0.98311 0.85066 0.77865 0.79172 0.77216 1.21515 1.21977 1.19000 1.18419 0.86555 0.84362 0.76016 1.90812 1.15608 1.87825 1.51405 1.20823 0.98828 0.95431 1.05699 1.22379 0.90235 0.98031 0.93969 1.22394 1.03897 0.93039 1.00362 1.19813 0.87230 0.88488 0.90173 1.84680 1.64014 1.22894 1.58502 1.67213 1.10091 1.25019 1.23240 1.22565 0.97606 0.85887 0.93186 0.88448 0.89315 0.90207 0.86688 0.90991 0.94540 0.91318 0.94552 0.96702 0.79701 0.93945 0.79637 0.79636 0.71220 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.87 127.77 1.13 1.79 16 2 N -0.60 -12.81 2.87 -850.45 -2.44 -15.25 16 3 C 0.13 3.13 5.42 86.38 0.47 3.60 16 4 C -0.12 -4.12 5.65 30.60 0.17 -3.94 16 5 C 0.15 6.31 6.26 86.38 0.54 6.85 16 6 N -0.75 -40.08 5.60 -343.45 -1.92 -42.00 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 10 N -0.97 -61.41 13.06 21.65 0.28 -61.12 16 11 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 C 0.56 14.71 7.37 86.72 0.64 15.35 16 16 O -0.58 -20.69 16.46 -3.98 -0.07 -20.75 16 17 C -0.20 -4.18 5.27 -19.99 -0.11 -4.28 16 18 C -0.02 -0.24 7.68 22.70 0.17 -0.07 16 19 C -0.18 -1.80 10.02 22.42 0.22 -1.57 16 20 C 0.32 5.35 7.74 84.83 0.66 6.01 16 21 O -0.49 -6.39 13.55 -87.96 -1.19 -7.58 16 22 N -0.54 -12.45 10.37 -307.82 -3.19 -15.64 16 23 C 0.17 3.96 10.79 85.03 0.92 4.87 16 24 H 0.10 0.40 6.86 -2.39 -0.02 0.38 16 25 H 0.09 0.92 8.03 -2.38 -0.02 0.90 16 26 H 0.08 0.82 5.83 -2.39 -0.01 0.80 16 27 H 0.12 2.08 8.07 -2.39 -0.02 2.06 16 28 H 0.07 2.05 7.36 -2.39 -0.02 2.04 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.37 21.20 7.67 -92.71 -0.71 20.49 16 34 H 0.25 15.33 8.31 -92.70 -0.77 14.56 16 35 H 0.19 0.84 5.29 -2.91 -0.02 0.83 16 36 H 0.19 0.49 8.06 -2.91 -0.02 0.46 16 37 H 0.43 1.08 9.06 -74.06 -0.67 0.40 16 38 H 0.16 3.96 8.05 -2.91 -0.02 3.94 16 Total: -1.00 -82.63 326.35 -0.66 -83.29 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.28 Total: 19.12 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.13 Total: 10.85 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -7.28 Total: -134.02 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -1.26 Total: -28.34 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -82.63 -0.66 -83.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733141115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.114 kcal (2) G-P(sol) polarization free energy of solvation -82.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds