Wall clock time and date at job start Tue Mar 31 2020 01:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99724 * 2 1 4 4 O 1.21614 * 119.99614 * 184.95762 * 3 2 1 5 5 C 1.47418 * 120.00218 * 4.94912 * 3 2 1 6 6 C 1.36089 * 126.44751 * 174.51198 * 5 3 2 7 7 O 1.34250 * 106.95036 * 180.02562 * 6 5 3 8 8 C 1.34052 * 108.22831 * 359.97438 * 7 6 5 9 9 N 1.29934 * 109.24038 * 0.26794 * 8 7 6 10 10 C 1.46499 * 120.00211 * 179.97438 * 2 1 3 11 11 H 1.08995 * 109.47012 * 174.33814 * 10 2 1 12 12 C 1.53006 * 109.46873 * 54.33635 * 10 2 1 13 13 N 1.46499 * 109.46662 * 55.00299 * 12 10 2 14 14 C 1.36941 * 119.99548 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99811 * 179.97438 * 14 13 12 17 17 N 1.31613 * 119.99663 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99906 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47054 * 119.99973 * 18 16 14 21 21 H 1.48504 * 109.47398 * 240.00160 * 18 16 14 22 22 C 1.53004 * 109.46822 * 294.33990 * 10 2 1 23 23 C 1.52994 * 117.50362 * 2.46573 * 22 10 2 24 24 C 1.52991 * 117.50147 * 293.80476 * 22 10 2 25 25 H 1.09007 * 109.46847 * 65.03077 * 1 2 3 26 26 H 1.09002 * 109.47595 * 185.02876 * 1 2 3 27 27 H 1.09004 * 109.47618 * 305.03257 * 1 2 3 28 28 H 1.08000 * 126.52418 * 359.97103 * 6 5 3 29 29 H 1.07996 * 125.37936 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.46877 * 174.99980 * 12 10 2 31 31 H 1.08998 * 109.46645 * 295.00350 * 12 10 2 32 32 H 0.96999 * 120.00473 * 359.97438 * 13 12 10 33 33 H 0.97004 * 119.99458 * 179.97438 * 17 16 14 34 34 H 1.09007 * 115.54776 * 148.13947 * 22 10 2 35 35 H 1.09003 * 117.49656 * 0.02562 * 23 22 10 36 36 H 1.09005 * 117.49954 * 145.01320 * 23 22 10 37 37 H 1.09004 * 117.50239 * 214.98622 * 24 22 10 38 38 H 1.09003 * 117.49647 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1692 -0.0910 5 6 1.4059 2.4416 0.1101 6 6 1.9536 3.6818 0.2278 7 8 0.9356 4.5541 0.2995 8 6 -0.2123 3.8657 0.2269 9 7 0.0543 2.5986 0.1186 10 6 2.1975 -1.2687 0.0006 11 1 3.2648 -1.0720 -0.1009 12 6 1.7242 -2.1314 -1.1711 13 7 1.8624 -1.3776 -2.4196 14 6 1.4978 -1.9501 -3.6090 15 1 1.1088 -2.9574 -3.6266 16 6 1.6283 -1.2356 -4.7920 17 7 2.1020 -0.0078 -4.7704 18 14 1.1317 -2.0167 -6.4144 19 1 0.6325 -3.3936 -6.1687 20 1 0.0586 -1.2071 -7.0457 21 1 2.3083 -2.0703 -7.3188 22 6 1.9376 -2.0070 1.3152 23 6 0.9711 -1.3605 2.3095 24 6 2.4739 -1.3724 2.5999 25 1 -0.3633 0.4338 -0.9317 26 1 -0.3634 -1.0237 0.0901 27 1 -0.3634 0.5899 0.8415 28 1 3.0068 3.9190 0.2587 29 1 -1.2024 4.2958 0.2586 30 1 2.3297 -3.0362 -1.2240 31 1 0.6786 -2.4019 -1.0238 32 1 2.2115 -0.4727 -2.4037 33 1 2.1935 0.4913 -5.5971 34 1 1.9413 -3.0952 1.2519 35 1 0.5200 -0.4093 2.0269 36 1 0.3390 -2.0234 2.9006 37 1 2.8301 -2.0429 3.3819 38 1 3.0123 -0.4290 2.5084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734296981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:35 Heat of formation + Delta-G solvation = 53.036632 kcal Electronic energy + Delta-G solvation = -22542.248516 eV Core-core repulsion = 19196.078193 eV Total energy + Delta-G solvation = -3346.170323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.35929 -39.90228 -37.39709 -35.00530 -34.77297 -33.63518 -31.31335 -30.25906 -28.48602 -26.51310 -24.42901 -23.52097 -22.71571 -22.09879 -21.38416 -20.59669 -19.05849 -17.64643 -17.20654 -16.69600 -16.51674 -15.88609 -15.59615 -15.01126 -14.60026 -14.41073 -13.87687 -13.54203 -13.32278 -13.13657 -12.92905 -12.50576 -12.02577 -11.84787 -11.55796 -11.28661 -11.19465 -10.98529 -10.82260 -10.78068 -10.49310 -10.21168 -10.01178 -9.82982 -9.65307 -9.58376 -9.11647 -8.82825 -8.15924 -6.84699 -5.68728 -2.97759 1.22388 2.17103 2.71715 3.26408 3.46616 3.51595 3.54292 3.58946 3.98797 4.09154 4.60419 4.80022 4.90452 4.93054 5.10875 5.15106 5.50625 5.54677 5.61608 5.65568 5.68603 5.78848 5.82581 5.92965 6.00683 6.09259 6.19537 6.22226 6.28332 6.39883 6.51657 6.57681 6.78304 7.04040 7.48840 7.74933 7.77543 8.48097 8.48608 9.60182 10.19035 10.54341 11.53570 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.006532 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.972241 B = 4285.763286 C = 5599.759563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.576 5.576 3 C 0.600 3.400 4 O -0.539 6.539 5 C -0.059 4.059 6 C 0.008 3.992 7 O -0.203 6.203 8 C 0.167 3.833 9 N -0.455 5.455 10 C 0.160 3.840 11 H 0.104 0.896 12 C 0.148 3.852 13 N -0.727 5.727 14 C -0.237 4.237 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.158 4.158 23 C -0.183 4.183 24 C -0.177 4.177 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.228 0.772 29 H 0.251 0.749 30 H 0.030 0.970 31 H 0.024 0.976 32 H 0.386 0.614 33 H 0.253 0.747 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 5.455 16.113 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.306 5.306 3 C 0.387 3.613 4 O -0.416 6.416 5 C -0.178 4.178 6 C -0.065 4.065 7 O -0.088 6.088 8 C -0.061 4.061 9 N -0.185 5.185 10 C 0.057 3.943 11 H 0.122 0.878 12 C 0.020 3.980 13 N -0.372 5.372 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.219 1.219 22 C -0.177 4.177 23 C -0.220 4.220 24 C -0.214 4.214 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.244 0.756 29 H 0.267 0.733 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.220 0.780 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.655 4.842 15.893 17.254 hybrid contribution 0.114 0.405 -1.053 1.134 sum -4.541 5.247 14.840 16.382 Atomic orbital electron populations 1.21846 0.78398 1.01718 1.02396 1.47441 1.07658 1.04775 1.70774 1.16739 0.85945 0.81967 0.76694 1.90808 1.12950 1.86675 1.51191 1.21820 0.89614 0.95660 1.10755 1.25243 0.93657 0.87021 1.00605 1.84405 1.15898 1.39664 1.68868 1.28170 0.91144 0.86047 1.00750 1.71040 1.13709 1.17540 1.16191 1.20964 0.98079 0.82366 0.92909 0.87808 1.20956 0.97791 0.93547 0.85741 1.42291 1.77782 1.16306 1.00771 1.19249 1.35019 0.97848 0.84756 0.91198 1.24746 1.02175 0.96386 0.97704 1.69705 1.51670 1.10182 1.26212 0.86136 0.77628 0.78189 0.84342 1.20594 1.22003 1.21939 1.22692 1.05213 0.99371 0.90462 1.23258 0.92622 1.03443 1.02675 1.22902 0.96819 1.02735 0.98991 0.91564 0.91254 0.91438 0.75561 0.73285 0.95248 0.95854 0.77983 0.93708 0.86866 0.87686 0.89295 0.89171 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 6.50 59.85 0.39 1.98 16 2 N -0.58 -10.26 1.52 -175.19 -0.27 -10.53 16 3 C 0.60 11.41 7.66 -12.52 -0.10 11.31 16 4 O -0.54 -11.60 16.24 5.27 0.09 -11.51 16 5 C -0.06 -0.95 6.71 -83.02 -0.56 -1.51 16 6 C 0.01 0.11 11.95 29.96 0.36 0.47 16 7 O -0.20 -2.32 10.73 6.52 0.07 -2.25 16 8 C 0.17 1.75 13.19 51.96 0.69 2.43 16 9 N -0.46 -6.49 7.98 -11.49 -0.09 -6.58 16 10 C 0.16 2.87 2.47 -67.93 -0.17 2.71 16 11 H 0.10 2.10 6.91 -51.93 -0.36 1.75 16 12 C 0.15 3.08 5.39 -4.04 -0.02 3.06 16 13 N -0.73 -19.23 5.43 -59.91 -0.33 -19.56 16 14 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -29.28 13.06 55.49 0.72 -28.56 16 18 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 21 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 22 C -0.16 -2.22 5.57 -90.63 -0.50 -2.73 16 23 C -0.18 -2.28 8.90 -26.70 -0.24 -2.51 16 24 C -0.18 -2.27 10.24 -26.70 -0.27 -2.55 16 25 H 0.07 1.24 7.74 -51.92 -0.40 0.84 16 26 H 0.07 1.05 6.26 -51.93 -0.32 0.73 16 27 H 0.07 0.96 5.68 -51.93 -0.29 0.66 16 28 H 0.23 2.41 8.06 -52.49 -0.42 1.98 16 29 H 0.25 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.02 0.48 7.04 -51.93 -0.37 0.11 16 32 H 0.39 11.15 7.33 -40.82 -0.30 10.85 16 33 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.11 1.45 8.07 -51.92 -0.42 1.04 16 35 H 0.11 1.39 4.58 -51.93 -0.24 1.16 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -35.17 318.35 -5.49 -40.66 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.78 Total: 10.39 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.67 Total: 5.15 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.04 Total: -65.23 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.16 Total: -13.76 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.17 -5.49 -40.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734296981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.693 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds