Wall clock time and date at job start Tue Mar 31 2020 01:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99724 * 2 1 4 4 O 1.21614 * 119.99614 * 184.95762 * 3 2 1 5 5 C 1.47418 * 120.00218 * 4.94912 * 3 2 1 6 6 C 1.36089 * 126.44751 * 174.51198 * 5 3 2 7 7 O 1.34250 * 106.95036 * 180.02562 * 6 5 3 8 8 C 1.34052 * 108.22831 * 359.97438 * 7 6 5 9 9 N 1.29934 * 109.24038 * 0.26794 * 8 7 6 10 10 C 1.46499 * 120.00211 * 179.97438 * 2 1 3 11 11 H 1.08995 * 109.47012 * 174.33814 * 10 2 1 12 12 C 1.53006 * 109.46873 * 54.33635 * 10 2 1 13 13 N 1.46499 * 109.46662 * 55.00299 * 12 10 2 14 14 C 1.36941 * 119.99548 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00234 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99811 * 179.97438 * 14 13 12 17 17 N 1.31613 * 119.99663 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99906 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47257 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47054 * 119.99973 * 18 16 14 21 21 H 1.48504 * 109.47398 * 240.00160 * 18 16 14 22 22 C 1.53004 * 109.46822 * 294.33990 * 10 2 1 23 23 C 1.52994 * 117.50362 * 2.46573 * 22 10 2 24 24 C 1.52991 * 117.50147 * 293.80476 * 22 10 2 25 25 H 1.09007 * 109.46847 * 65.03077 * 1 2 3 26 26 H 1.09002 * 109.47595 * 185.02876 * 1 2 3 27 27 H 1.09004 * 109.47618 * 305.03257 * 1 2 3 28 28 H 1.08000 * 126.52418 * 359.97103 * 6 5 3 29 29 H 1.07996 * 125.37936 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.46877 * 174.99980 * 12 10 2 31 31 H 1.08998 * 109.46645 * 295.00350 * 12 10 2 32 32 H 0.96999 * 120.00473 * 359.97438 * 13 12 10 33 33 H 0.97004 * 119.99458 * 179.97438 * 17 16 14 34 34 H 1.09007 * 115.54776 * 148.13947 * 22 10 2 35 35 H 1.09003 * 117.49656 * 0.02562 * 23 22 10 36 36 H 1.09005 * 117.49954 * 145.01320 * 23 22 10 37 37 H 1.09004 * 117.50239 * 214.98622 * 24 22 10 38 38 H 1.09003 * 117.49647 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1692 -0.0910 5 6 1.4059 2.4416 0.1101 6 6 1.9536 3.6818 0.2278 7 8 0.9356 4.5541 0.2995 8 6 -0.2123 3.8657 0.2269 9 7 0.0543 2.5986 0.1186 10 6 2.1975 -1.2687 0.0006 11 1 3.2648 -1.0720 -0.1009 12 6 1.7242 -2.1314 -1.1711 13 7 1.8624 -1.3776 -2.4196 14 6 1.4978 -1.9501 -3.6090 15 1 1.1088 -2.9574 -3.6266 16 6 1.6283 -1.2356 -4.7920 17 7 2.1020 -0.0078 -4.7704 18 14 1.1317 -2.0167 -6.4144 19 1 0.6325 -3.3936 -6.1687 20 1 0.0586 -1.2071 -7.0457 21 1 2.3083 -2.0703 -7.3188 22 6 1.9376 -2.0070 1.3152 23 6 0.9711 -1.3605 2.3095 24 6 2.4739 -1.3724 2.5999 25 1 -0.3633 0.4338 -0.9317 26 1 -0.3634 -1.0237 0.0901 27 1 -0.3634 0.5899 0.8415 28 1 3.0068 3.9190 0.2587 29 1 -1.2024 4.2958 0.2586 30 1 2.3297 -3.0362 -1.2240 31 1 0.6786 -2.4019 -1.0238 32 1 2.2115 -0.4727 -2.4037 33 1 2.1935 0.4913 -5.5971 34 1 1.9413 -3.0952 1.2519 35 1 0.5200 -0.4093 2.0269 36 1 0.3390 -2.0234 2.9006 37 1 2.8301 -2.0429 3.3819 38 1 3.0123 -0.4290 2.5084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734296981.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:34 Heat of formation + Delta-G solvation = 27.510474 kcal Electronic energy + Delta-G solvation = -22543.355413 eV Core-core repulsion = 19196.078193 eV Total energy + Delta-G solvation = -3347.277220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.34852 -41.28175 -38.73299 -36.54569 -36.07975 -35.14315 -33.27177 -31.38299 -30.17273 -27.92042 -26.19766 -25.01321 -23.65753 -23.13120 -23.01294 -21.75271 -20.38742 -19.22969 -18.85351 -17.86114 -17.71609 -17.14832 -16.97905 -16.59705 -15.89767 -15.64445 -15.39814 -15.17006 -14.82716 -14.63363 -14.55474 -13.94223 -13.46373 -13.21023 -13.19098 -12.87384 -12.72334 -12.51671 -12.32808 -12.09222 -12.05375 -11.83558 -11.64845 -11.23907 -11.15154 -11.02084 -10.81890 -10.20359 -9.56829 -9.01582 -7.94708 -5.24836 0.13544 1.14648 1.44354 1.46265 1.56380 1.73048 2.01449 2.26994 2.53952 2.91301 3.11528 3.38465 3.54894 3.76644 3.91074 3.96522 4.07629 4.14404 4.31800 4.42918 4.47804 4.55809 4.60753 4.64951 4.76035 4.80344 4.89220 5.03061 5.04323 5.13486 5.21704 5.27715 5.32539 5.46852 5.64192 6.24605 6.31289 6.55122 7.06876 7.30915 8.06285 8.30186 9.28872 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.006532 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.972241 B = 4285.763286 C = 5599.759563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.576 5.576 3 C 0.588 3.412 4 O -0.580 6.580 5 C -0.099 4.099 6 C 0.022 3.978 7 O -0.196 6.196 8 C 0.193 3.807 9 N -0.488 5.488 10 C 0.166 3.834 11 H 0.072 0.928 12 C 0.147 3.853 13 N -0.741 5.741 14 C -0.241 4.241 15 H 0.080 0.920 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.977 3.023 19 H -0.262 1.262 20 H -0.293 1.293 21 H -0.296 1.296 22 C -0.168 4.168 23 C -0.166 4.166 24 C -0.171 4.171 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.245 0.755 29 H 0.304 0.696 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.370 0.630 33 H 0.248 0.752 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 5.057 17.359 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.305 5.305 3 C 0.377 3.623 4 O -0.461 6.461 5 C -0.217 4.217 6 C -0.052 4.052 7 O -0.081 6.081 8 C -0.035 4.035 9 N -0.217 5.217 10 C 0.063 3.937 11 H 0.090 0.910 12 C 0.020 3.980 13 N -0.383 5.383 14 C -0.372 4.372 15 H 0.098 0.902 16 C -0.272 4.272 17 N -0.622 5.622 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.223 1.223 22 C -0.187 4.187 23 C -0.203 4.203 24 C -0.208 4.208 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.261 0.739 29 H 0.319 0.681 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.201 0.799 33 H 0.057 0.943 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.582 4.382 17.177 18.910 hybrid contribution 0.669 0.578 -1.381 1.640 sum -5.914 4.960 15.796 17.581 Atomic orbital electron populations 1.21790 0.77266 1.02298 1.01667 1.47527 1.08273 1.04538 1.70198 1.17253 0.85836 0.83254 0.75960 1.90761 1.14646 1.87440 1.53234 1.21610 0.90861 0.95228 1.13994 1.25544 0.94740 0.86311 0.98624 1.84457 1.15918 1.39114 1.68634 1.29341 0.92304 0.84954 0.96931 1.70953 1.12711 1.19761 1.18322 1.20766 0.96255 0.82563 0.94141 0.91016 1.21139 0.98507 0.93644 0.84677 1.42501 1.77625 1.15963 1.02224 1.19702 1.33667 0.98118 0.85739 0.90169 1.25640 1.03050 0.97005 1.01462 1.69896 1.53726 1.11900 1.26706 0.85013 0.76822 0.78025 0.79516 1.18606 1.22072 1.22303 1.22572 1.07510 0.99836 0.88798 1.23309 0.92537 1.03141 1.01333 1.22909 0.97248 1.02049 0.98591 0.94597 0.90325 0.89277 0.73900 0.68106 0.94671 0.94516 0.79905 0.94305 0.85056 0.88670 0.86481 0.86617 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.58 6.50 127.77 0.83 4.41 16 2 N -0.58 -21.09 1.52 -826.44 -1.26 -22.34 16 3 C 0.59 23.44 7.66 86.66 0.66 24.11 16 4 O -0.58 -26.61 16.24 -4.08 -0.07 -26.68 16 5 C -0.10 -3.24 6.71 40.41 0.27 -2.97 16 6 C 0.02 0.58 11.95 67.32 0.80 1.39 16 7 O -0.20 -4.08 10.73 0.43 0.00 -4.07 16 8 C 0.19 3.54 13.19 130.52 1.72 5.26 16 9 N -0.49 -13.53 7.98 -305.16 -2.44 -15.97 16 10 C 0.17 6.10 2.47 44.99 0.11 6.21 16 11 H 0.07 3.09 6.91 -2.39 -0.02 3.07 16 12 C 0.15 6.17 5.39 86.38 0.47 6.63 16 13 N -0.74 -40.18 5.43 -343.44 -1.87 -42.04 16 14 C -0.24 -13.96 9.99 84.03 0.84 -13.12 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 17 N -0.97 -62.99 13.06 21.65 0.28 -62.70 16 18 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 19 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 21 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 22 C -0.17 -4.51 5.57 -10.80 -0.06 -4.57 16 23 C -0.17 -3.75 8.90 30.61 0.27 -3.47 16 24 C -0.17 -4.14 10.24 30.61 0.31 -3.82 16 25 H 0.04 1.37 7.74 -2.38 -0.02 1.35 16 26 H 0.08 2.31 6.26 -2.39 -0.01 2.30 16 27 H 0.09 2.46 5.68 -2.39 -0.01 2.44 16 28 H 0.25 5.17 8.06 -2.91 -0.02 5.15 16 29 H 0.30 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.46 7.04 -2.39 -0.02 1.44 16 32 H 0.37 22.32 7.33 -92.71 -0.68 21.64 16 33 H 0.25 15.56 8.31 -92.70 -0.77 14.79 16 34 H 0.13 3.07 8.07 -2.38 -0.02 3.05 16 35 H 0.10 2.36 4.58 -2.39 -0.01 2.35 16 36 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -79.40 318.35 3.80 -75.60 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.41 Total: 32.66 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.70 Total: 15.73 kcal Atomic # 7 Polarization: -137.78 SS G_CDS: -5.28 Total: -143.06 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.06 Total: -30.75 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -79.40 3.80 -75.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734296981.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.109 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds