Wall clock time and date at job start Tue Mar 31 2020 01:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00120 * 2 1 4 4 C 1.53003 * 109.47331 * 270.00166 * 3 2 1 5 5 N 1.46497 * 109.47315 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00447 * 179.97438 * 5 4 3 7 7 H 1.08009 * 119.99687 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00652 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00408 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47263 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47070 * 120.00062 * 10 8 6 13 13 H 1.48494 * 109.47217 * 240.00173 * 10 8 6 14 14 C 1.34778 * 120.00062 * 180.02562 * 2 1 3 15 15 O 1.21607 * 120.00151 * 185.18111 * 14 2 1 16 16 C 1.47394 * 119.99748 * 5.17792 * 14 2 1 17 17 C 1.37362 * 128.56901 * 321.15483 * 16 14 2 18 18 O 1.33488 * 106.34457 * 179.97438 * 17 16 14 19 19 N 1.20662 * 113.15469 * 0.02562 * 18 17 16 20 20 C 1.30008 * 112.30027 * 359.97438 * 19 18 17 21 21 C 1.50702 * 127.33227 * 180.02562 * 20 19 18 22 22 C 1.53003 * 117.49829 * 8.74405 * 21 20 19 23 23 C 1.53005 * 117.49727 * 300.08731 * 21 20 19 24 24 H 1.08998 * 109.46919 * 264.50551 * 1 2 3 25 25 H 1.09001 * 109.47016 * 24.50321 * 1 2 3 26 26 H 1.08993 * 109.47168 * 144.50061 * 1 2 3 27 27 H 1.08998 * 109.47261 * 30.00128 * 3 2 1 28 28 H 1.08998 * 109.47291 * 150.00462 * 3 2 1 29 29 H 1.08998 * 109.46917 * 300.00173 * 4 3 2 30 30 H 1.08998 * 109.46691 * 59.99929 * 4 3 2 31 31 H 0.97004 * 120.00054 * 0.02562 * 5 4 3 32 32 H 0.97005 * 119.99435 * 179.97438 * 9 8 6 33 33 H 1.08000 * 126.82180 * 359.97438 * 17 16 14 34 34 H 1.09000 * 115.55450 * 154.41708 * 21 20 19 35 35 H 1.08992 * 117.50051 * 0.02562 * 22 21 20 36 36 H 1.09007 * 117.49401 * 145.01881 * 22 21 20 37 37 H 1.09003 * 117.50082 * 214.97793 * 23 21 20 38 38 H 1.08999 * 117.50014 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 7 3.1845 2.9795 -1.4425 6 6 3.5272 3.5723 -2.6283 7 1 3.2575 3.1044 -3.5637 8 6 4.2213 4.7744 -2.6284 9 7 4.5504 5.3442 -1.4884 10 14 4.6881 5.5834 -4.2460 11 1 4.2050 4.7481 -5.3748 12 1 4.0649 6.9290 -4.3245 13 1 6.1650 5.7165 -4.3248 14 6 2.1389 -1.1672 -0.0005 15 8 3.3513 -1.1694 0.0946 16 6 1.4064 -2.4410 -0.1163 17 6 0.2053 -2.7927 0.4497 18 8 -0.0445 -4.0430 0.0545 19 7 0.8170 -4.4963 -0.6584 20 6 1.7811 -3.6494 -0.8668 21 6 3.0189 -3.8606 -1.7001 22 6 3.0891 -5.1297 -2.5517 23 6 3.9560 -5.0009 -1.2967 24 1 -0.3633 -0.0984 1.0229 25 1 -0.3633 0.9351 -0.4262 26 1 -0.3633 -0.8366 -0.5967 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5137 29 1 3.0416 0.9508 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 3.4271 3.3995 -0.6024 32 1 5.0357 6.1841 -1.4885 33 1 -0.4139 -2.1794 1.0877 34 1 3.4723 -2.9563 -2.1061 35 1 2.2400 -5.8117 -2.5097 36 1 3.5890 -5.0604 -3.5180 37 1 5.0259 -4.8469 -1.4377 38 1 3.6774 -5.5980 -0.4284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753230201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:19 Heat of formation + Delta-G solvation = 74.974627 kcal Electronic energy + Delta-G solvation = -21356.170907 eV Core-core repulsion = 18010.951887 eV Total energy + Delta-G solvation = -3345.219020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.12836 -39.75220 -37.65541 -35.98479 -34.52613 -33.37912 -32.22791 -31.21959 -28.36306 -26.89280 -25.11940 -24.42940 -23.25111 -22.56782 -21.53680 -20.51372 -19.82549 -18.00840 -17.75360 -17.20701 -16.89831 -16.00211 -15.74113 -15.40381 -14.86669 -14.46483 -14.00463 -13.83682 -13.41579 -13.24988 -13.06308 -12.86091 -12.38998 -12.25701 -11.88879 -11.79940 -11.51419 -11.35159 -11.04113 -10.91618 -10.72615 -10.62864 -10.14454 -10.07157 -9.83980 -9.74177 -9.71329 -8.89714 -8.63843 -6.95512 -5.77830 -3.07349 0.95281 1.55650 2.56569 2.86724 3.11609 3.43332 3.49023 3.51300 3.64318 3.73969 4.04633 4.50161 4.60420 4.68899 4.72894 4.79105 4.83237 4.94437 5.15371 5.26325 5.43049 5.44708 5.50260 5.53839 5.62299 5.71976 5.76152 5.90147 5.93524 5.97601 6.06074 6.46151 6.68357 6.83567 7.32739 7.69444 7.97907 8.11622 8.40517 9.51724 10.07004 10.42146 11.45087 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.003722 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.996065 B = 7521.554893 C = 8291.626332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.603 5.603 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.730 5.730 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.013 4.013 9 N -0.933 5.933 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.589 3.411 15 O -0.515 6.515 16 C -0.234 4.234 17 C -0.018 4.018 18 O 0.097 5.903 19 N -0.358 5.358 20 C 0.099 3.901 21 C -0.087 4.087 22 C -0.165 4.165 23 C -0.154 4.154 24 H 0.058 0.942 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.022 0.978 30 H 0.019 0.981 31 H 0.384 0.616 32 H 0.255 0.745 33 H 0.228 0.772 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 -18.986 4.701 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.337 5.337 3 C -0.014 4.014 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.209 4.209 9 N -0.581 5.581 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.376 3.624 15 O -0.390 6.390 16 C -0.242 4.242 17 C -0.100 4.100 18 O 0.036 5.964 19 N -0.064 5.064 20 C -0.063 4.063 21 C -0.106 4.106 22 C -0.202 4.202 23 C -0.192 4.192 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.040 0.960 30 H 0.037 0.963 31 H 0.218 0.782 32 H 0.065 0.935 33 H 0.244 0.756 34 H 0.151 0.849 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.630 -20.181 4.194 23.192 hybrid contribution 0.476 1.616 -0.372 1.725 sum -10.154 -18.565 3.822 21.503 Atomic orbital electron populations 1.22039 0.79779 1.04272 1.01361 1.47635 1.06957 1.06010 1.73059 1.21791 0.97691 0.82508 0.99405 1.20910 0.95217 0.89499 0.92986 1.42206 1.67115 1.21517 1.06661 1.19245 1.29455 1.02357 0.85945 0.91141 1.24747 1.01181 0.98020 0.96949 1.69676 1.44979 1.19564 1.23908 0.86095 0.77951 0.79148 0.82872 1.20549 1.21808 1.21767 1.16906 0.86535 0.81822 0.77177 1.90853 1.13070 1.86678 1.48434 1.22292 0.97701 0.97654 1.06518 1.26532 0.96508 0.86935 0.99981 1.84565 1.38390 1.25317 1.48086 1.73585 1.00159 1.21945 1.10738 1.23801 0.95927 0.88276 0.98253 1.20282 0.93152 0.95677 1.01516 1.23065 1.02873 0.98491 0.95779 1.23018 0.97606 0.99608 0.98985 0.92368 0.89774 0.91213 0.90035 0.89280 0.96015 0.96337 0.78212 0.93502 0.75631 0.84934 0.88098 0.87759 0.87537 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 9.12 59.85 0.55 1.14 16 2 N -0.60 -8.19 2.87 -182.86 -0.53 -8.72 16 3 C 0.11 1.79 5.54 -4.04 -0.02 1.77 16 4 C 0.14 2.96 6.58 -4.04 -0.03 2.93 16 5 N -0.73 -18.86 5.60 -59.91 -0.34 -19.19 16 6 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 7 H 0.07 1.97 7.83 -52.48 -0.41 1.55 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 10 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.59 8.98 7.64 -12.53 -0.10 8.89 16 15 O -0.51 -9.96 16.66 5.27 0.09 -9.87 16 16 C -0.23 -2.91 5.65 -102.90 -0.58 -3.49 16 17 C -0.02 -0.15 10.13 30.41 0.31 0.16 16 18 O 0.10 0.98 11.06 18.66 0.21 1.19 16 19 N -0.36 -4.39 11.71 34.78 0.41 -3.98 16 20 C 0.10 1.29 7.08 -79.77 -0.56 0.72 16 21 C -0.09 -1.08 6.31 -91.77 -0.58 -1.66 16 22 C -0.16 -1.64 10.17 -26.69 -0.27 -1.91 16 23 C -0.15 -1.61 10.24 -26.69 -0.27 -1.89 16 24 H 0.06 0.34 7.51 -51.93 -0.39 -0.05 16 25 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 26 H 0.07 0.52 5.96 -51.93 -0.31 0.21 16 27 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.09 1.65 7.36 -51.93 -0.38 1.27 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.38 10.27 7.67 -40.82 -0.31 9.96 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 33 H 0.23 0.89 6.65 -52.49 -0.35 0.54 16 34 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.10 1.01 7.97 -51.93 -0.41 0.60 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -34.81 329.99 -6.37 -41.18 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.08 Total: 5.28 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.81 Total: -0.78 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.27 Total: -59.54 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.29 Total: -8.68 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.81 -6.37 -41.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753230201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.150 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds