Wall clock time and date at job start Tue Mar 31 2020 01:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00120 * 2 1 4 4 C 1.53003 * 109.47331 * 270.00166 * 3 2 1 5 5 N 1.46497 * 109.47315 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00447 * 179.97438 * 5 4 3 7 7 H 1.08009 * 119.99687 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00652 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99512 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00408 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47263 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47070 * 120.00062 * 10 8 6 13 13 H 1.48494 * 109.47217 * 240.00173 * 10 8 6 14 14 C 1.34778 * 120.00062 * 180.02562 * 2 1 3 15 15 O 1.21607 * 120.00151 * 185.18111 * 14 2 1 16 16 C 1.47394 * 119.99748 * 5.17792 * 14 2 1 17 17 C 1.37362 * 128.56901 * 321.15483 * 16 14 2 18 18 O 1.33488 * 106.34457 * 179.97438 * 17 16 14 19 19 N 1.20662 * 113.15469 * 0.02562 * 18 17 16 20 20 C 1.30008 * 112.30027 * 359.97438 * 19 18 17 21 21 C 1.50702 * 127.33227 * 180.02562 * 20 19 18 22 22 C 1.53003 * 117.49829 * 8.74405 * 21 20 19 23 23 C 1.53005 * 117.49727 * 300.08731 * 21 20 19 24 24 H 1.08998 * 109.46919 * 264.50551 * 1 2 3 25 25 H 1.09001 * 109.47016 * 24.50321 * 1 2 3 26 26 H 1.08993 * 109.47168 * 144.50061 * 1 2 3 27 27 H 1.08998 * 109.47261 * 30.00128 * 3 2 1 28 28 H 1.08998 * 109.47291 * 150.00462 * 3 2 1 29 29 H 1.08998 * 109.46917 * 300.00173 * 4 3 2 30 30 H 1.08998 * 109.46691 * 59.99929 * 4 3 2 31 31 H 0.97004 * 120.00054 * 0.02562 * 5 4 3 32 32 H 0.97005 * 119.99435 * 179.97438 * 9 8 6 33 33 H 1.08000 * 126.82180 * 359.97438 * 17 16 14 34 34 H 1.09000 * 115.55450 * 154.41708 * 21 20 19 35 35 H 1.08992 * 117.50051 * 0.02562 * 22 21 20 36 36 H 1.09007 * 117.49401 * 145.01881 * 22 21 20 37 37 H 1.09003 * 117.50082 * 214.97793 * 23 21 20 38 38 H 1.08999 * 117.50014 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 7 3.1845 2.9795 -1.4425 6 6 3.5272 3.5723 -2.6283 7 1 3.2575 3.1044 -3.5637 8 6 4.2213 4.7744 -2.6284 9 7 4.5504 5.3442 -1.4884 10 14 4.6881 5.5834 -4.2460 11 1 4.2050 4.7481 -5.3748 12 1 4.0649 6.9290 -4.3245 13 1 6.1650 5.7165 -4.3248 14 6 2.1389 -1.1672 -0.0005 15 8 3.3513 -1.1694 0.0946 16 6 1.4064 -2.4410 -0.1163 17 6 0.2053 -2.7927 0.4497 18 8 -0.0445 -4.0430 0.0545 19 7 0.8170 -4.4963 -0.6584 20 6 1.7811 -3.6494 -0.8668 21 6 3.0189 -3.8606 -1.7001 22 6 3.0891 -5.1297 -2.5517 23 6 3.9560 -5.0009 -1.2967 24 1 -0.3633 -0.0984 1.0229 25 1 -0.3633 0.9351 -0.4262 26 1 -0.3633 -0.8366 -0.5967 27 1 1.6085 2.0284 0.5138 28 1 3.1500 1.1384 0.5137 29 1 3.0416 0.9508 -1.9563 30 1 1.5001 1.8408 -1.9563 31 1 3.4271 3.3995 -0.6024 32 1 5.0357 6.1841 -1.4885 33 1 -0.4139 -2.1794 1.0877 34 1 3.4723 -2.9563 -2.1061 35 1 2.2400 -5.8117 -2.5097 36 1 3.5890 -5.0604 -3.5180 37 1 5.0259 -4.8469 -1.4377 38 1 3.6774 -5.5980 -0.4284 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753230201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:18 Heat of formation + Delta-G solvation = 51.088663 kcal Electronic energy + Delta-G solvation = -21357.206680 eV Core-core repulsion = 18010.951887 eV Total energy + Delta-G solvation = -3346.254793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.01090 -40.91962 -38.52260 -37.41538 -36.18865 -34.41678 -33.48057 -32.79604 -29.92628 -27.83676 -26.50003 -25.50402 -24.73663 -23.42958 -23.11149 -21.35403 -20.93943 -19.28722 -18.88454 -18.66403 -17.89542 -17.29960 -16.83845 -16.56133 -16.25143 -15.80734 -15.33537 -15.21812 -15.06423 -14.70937 -14.34115 -13.94028 -13.25269 -13.16815 -13.09065 -12.92011 -12.77997 -12.74442 -12.60481 -12.38973 -12.33610 -12.10359 -11.89280 -11.50835 -11.28413 -11.00709 -10.72776 -10.57579 -9.79282 -9.08409 -7.99480 -5.30281 0.14585 0.62771 1.45471 1.47430 1.52894 1.57971 1.91175 2.22715 2.54469 2.77411 2.86639 3.19320 3.34176 3.59239 3.80799 3.87508 3.96777 4.00035 4.03570 4.13887 4.20391 4.29170 4.53035 4.56214 4.62623 4.64563 4.69166 4.87053 4.89589 4.97264 5.00690 5.06700 5.10919 5.38943 5.47740 6.22266 6.25430 6.98271 7.17081 7.28786 7.99700 8.25336 9.23975 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.003722 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.996065 B = 7521.554893 C = 8291.626332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.599 5.599 3 C 0.123 3.877 4 C 0.148 3.852 5 N -0.742 5.742 6 C -0.252 4.252 7 H 0.072 0.928 8 C -0.070 4.070 9 N -0.966 5.966 10 Si 0.976 3.024 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.292 1.292 14 C 0.588 3.412 15 O -0.572 6.572 16 C -0.270 4.270 17 C 0.030 3.970 18 O 0.106 5.894 19 N -0.370 5.370 20 C 0.082 3.918 21 C -0.114 4.114 22 C -0.146 4.146 23 C -0.151 4.151 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.063 0.937 29 H -0.004 1.004 30 H 0.032 0.968 31 H 0.377 0.623 32 H 0.254 0.746 33 H 0.279 0.721 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.384 -19.696 4.759 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.331 5.331 3 C 0.000 4.000 4 C 0.020 3.980 5 N -0.386 5.386 6 C -0.383 4.383 7 H 0.090 0.910 8 C -0.263 4.263 9 N -0.617 5.617 10 Si 0.804 3.196 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.219 1.219 14 C 0.376 3.624 15 O -0.451 6.451 16 C -0.278 4.278 17 C -0.052 4.052 18 O 0.046 5.954 19 N -0.076 5.076 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.184 4.184 23 C -0.189 4.189 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.014 0.986 30 H 0.049 0.951 31 H 0.209 0.791 32 H 0.063 0.937 33 H 0.294 0.706 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.059 -20.933 4.237 25.033 hybrid contribution 1.130 1.791 -0.360 2.148 sum -11.928 -19.142 3.876 22.885 Atomic orbital electron populations 1.22455 0.76290 1.05238 1.04425 1.47673 1.08962 1.04326 1.72132 1.21419 0.97739 0.84571 0.96291 1.20961 0.94369 0.86810 0.95856 1.42378 1.67633 1.22920 1.05650 1.19607 1.29169 1.02612 0.86923 0.91001 1.25593 1.01543 0.98778 1.00380 1.69821 1.45912 1.19911 1.26007 0.85044 0.77201 0.78142 0.79167 1.19236 1.21334 1.21949 1.17293 0.86047 0.82998 0.76032 1.90816 1.15645 1.87565 1.51098 1.22037 0.99742 0.96646 1.09374 1.27322 0.94709 0.85826 0.97331 1.84553 1.37609 1.25868 1.47390 1.73586 1.00296 1.22162 1.11518 1.23953 0.96299 0.88894 0.98813 1.20259 0.94095 0.95690 1.03294 1.23113 1.02579 0.96559 0.96107 1.23078 0.97904 0.98473 0.99422 0.88194 0.89458 0.89652 0.87623 0.91810 0.98556 0.95059 0.79100 0.93738 0.70576 0.87238 0.87884 0.86298 0.86810 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 9.12 127.77 1.17 1.94 16 2 N -0.60 -15.47 2.87 -850.71 -2.44 -17.92 16 3 C 0.12 4.06 5.54 86.38 0.48 4.54 16 4 C 0.15 6.22 6.58 86.38 0.57 6.78 16 5 N -0.74 -39.01 5.60 -343.46 -1.92 -40.93 16 6 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 7 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 8 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 9 N -0.97 -59.51 13.06 21.65 0.28 -59.22 16 10 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 14 C 0.59 17.91 7.64 86.65 0.66 18.57 16 15 O -0.57 -23.27 16.66 -4.05 -0.07 -23.34 16 16 C -0.27 -6.38 5.65 -18.75 -0.11 -6.48 16 17 C 0.03 0.39 10.13 67.61 0.69 1.08 16 18 O 0.11 1.83 11.06 77.02 0.85 2.68 16 19 N -0.37 -8.50 11.71 -44.79 -0.52 -9.03 16 20 C 0.08 2.10 7.08 45.16 0.32 2.42 16 21 C -0.11 -2.93 6.31 -11.54 -0.07 -3.01 16 22 C -0.15 -2.87 10.17 30.62 0.31 -2.56 16 23 C -0.15 -3.19 10.24 30.62 0.31 -2.88 16 24 H 0.10 0.59 7.51 -2.39 -0.02 0.57 16 25 H 0.09 1.20 8.03 -2.39 -0.02 1.18 16 26 H 0.08 0.92 5.96 -2.39 -0.01 0.91 16 27 H 0.11 2.98 8.07 -2.39 -0.02 2.96 16 28 H 0.06 2.45 7.36 -2.39 -0.02 2.43 16 29 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.38 20.63 7.67 -92.71 -0.71 19.92 16 32 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 33 H 0.28 0.43 6.65 -2.91 -0.02 0.41 16 34 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 35 H 0.10 1.98 7.97 -2.39 -0.02 1.96 16 36 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -78.68 329.99 4.21 -74.47 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.37 Total: 21.54 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.63 Total: 3.13 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -4.61 Total: -127.10 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.78 Total: -20.66 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.68 4.21 -74.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753230201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.562 kcal (2) G-P(sol) polarization free energy of solvation -78.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds