Wall clock time and date at job start Tue Mar 31 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 102.99740 * 2 1 4 4 C 1.52998 * 109.47415 * 59.99912 * 3 2 1 5 5 C 1.53001 * 109.47230 * 299.99791 * 3 2 1 6 6 C 1.53004 * 109.46785 * 180.02562 * 3 2 1 7 7 C 1.52995 * 109.47286 * 64.99856 * 6 3 2 8 8 N 1.46505 * 109.46788 * 179.97438 * 7 6 3 9 9 C 1.38855 * 119.99648 * 179.97438 * 8 7 6 10 10 C 1.39568 * 119.84643 * 359.73541 * 9 8 7 11 11 C 1.36336 * 120.16398 * 179.71732 * 10 9 8 12 12 C 1.40887 * 119.83522 * 0.54986 * 11 10 9 13 13 C 1.41138 * 120.15888 * 179.70431 * 12 11 10 14 14 H 1.07998 * 120.00076 * 204.63105 * 13 12 11 15 15 C 1.39867 * 119.99657 * 24.62602 * 13 12 11 16 16 N 1.30899 * 120.00270 * 17.95962 * 15 13 12 17 17 Si 1.86808 * 119.99673 * 197.95959 * 15 13 12 18 18 H 1.48496 * 109.47088 * 60.00108 * 17 15 13 19 19 H 1.48501 * 109.46866 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46731 * 299.99953 * 17 15 13 21 21 C 1.40883 * 119.68869 * 359.72272 * 12 11 10 22 22 C 1.36343 * 119.84059 * 359.97438 * 21 12 11 23 23 H 1.08995 * 109.47533 * 60.00179 * 1 2 3 24 24 H 1.09008 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47439 * 300.00037 * 1 2 3 26 26 H 1.08997 * 109.47343 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47413 * 300.00389 * 4 3 2 28 28 H 1.09003 * 109.46627 * 60.00172 * 4 3 2 29 29 H 1.09004 * 109.47431 * 300.00364 * 5 3 2 30 30 H 1.09001 * 109.46506 * 60.00280 * 5 3 2 31 31 H 1.08995 * 109.47157 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46820 * 304.99473 * 6 3 2 33 33 H 1.09006 * 109.46674 * 184.99745 * 6 3 2 34 34 H 1.08997 * 109.47083 * 60.00264 * 7 6 3 35 35 H 1.08998 * 109.47410 * 299.99789 * 7 6 3 36 36 H 0.96996 * 120.00184 * 0.02562 * 8 7 6 37 37 H 1.08003 * 119.91446 * 359.97233 * 10 9 8 38 38 H 1.08000 * 120.08688 * 180.27597 * 11 10 9 39 39 H 0.97001 * 120.00134 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.08598 * 179.97438 * 21 12 11 41 41 H 1.07998 * 119.92670 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.6339 2.4267 1.2492 5 6 1.6340 2.4267 -1.2493 6 6 3.7423 1.9399 -0.0006 7 6 4.3172 1.3918 -1.3082 8 7 5.7728 1.5575 -1.3090 9 6 6.5196 1.1305 -2.3990 10 6 5.8807 0.5388 -3.4897 11 6 6.6069 0.1224 -4.5658 12 6 8.0069 0.2801 -4.5700 13 6 8.7660 -0.1542 -5.6778 14 1 9.8079 -0.4092 -5.5519 15 6 8.1689 -0.2544 -6.9386 16 7 7.0433 0.3682 -7.1811 17 14 8.9779 -1.2768 -8.2765 18 1 9.0934 -2.6855 -7.8213 19 1 8.1524 -1.2206 -9.5097 20 1 10.3312 -0.7363 -8.5623 21 6 8.6457 0.8730 -3.4631 22 6 7.9061 1.2904 -2.3965 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8795 3.4887 1.2494 27 1 0.5509 2.3038 1.2493 28 1 2.0530 1.9571 2.1392 29 1 2.0529 1.9571 -2.1393 30 1 0.5509 2.3038 -1.2492 31 1 1.8787 3.4888 -1.2490 32 1 4.1700 1.3952 0.8410 33 1 3.9879 2.9982 0.0889 34 1 3.8894 1.9366 -2.1498 35 1 4.0716 0.3336 -1.3978 36 1 6.2150 1.9648 -0.5478 37 1 4.8079 0.4143 -3.4830 38 1 6.1107 -0.3312 -5.4111 39 1 6.6294 0.2990 -8.0557 40 1 9.7186 0.9966 -3.4594 41 1 8.3944 1.7446 -1.5470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385335993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:59 Heat of formation + Delta-G solvation = 6.646341 kcal Electronic energy + Delta-G solvation = -19080.683443 eV Core-core repulsion = 16278.794701 eV Total energy + Delta-G solvation = -2801.888742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.17370 -37.07596 -34.65848 -32.87476 -30.13574 -29.38814 -28.83581 -27.76993 -27.34841 -24.36030 -22.96299 -21.10742 -20.32129 -19.80597 -17.14409 -16.57810 -15.82350 -15.35540 -15.18514 -14.86373 -14.40102 -14.09958 -13.93269 -13.78530 -13.32841 -12.95842 -12.64155 -12.44798 -12.29493 -12.21124 -12.04518 -11.76866 -11.64631 -11.50906 -11.18107 -10.98012 -10.92893 -10.85274 -10.64324 -10.37969 -9.78934 -9.64932 -9.21955 -9.14627 -8.45828 -7.73760 -7.42479 -6.58543 -6.31806 -3.97436 1.56282 2.43723 2.98218 3.16287 3.17980 3.21186 3.41895 4.09725 4.17213 4.49640 4.65559 4.82575 4.91228 4.92626 5.01964 5.24111 5.26137 5.38926 5.44292 5.50696 5.57637 5.59978 5.78086 5.84660 5.88542 5.98377 6.28020 6.30247 6.34148 6.42002 7.00237 7.01175 7.26222 7.41801 7.62004 7.75528 7.91199 8.21273 8.35768 8.56036 8.77523 8.86583 9.11820 9.21713 10.42983 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027338 B = 0.003407 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.956683 B = 8215.239554 C = 8798.406395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.243 6.243 3 C -0.025 4.025 4 C -0.142 4.142 5 C -0.150 4.150 6 C -0.105 4.105 7 C 0.136 3.864 8 N -0.763 5.763 9 C 0.094 3.906 10 C -0.163 4.163 11 C -0.124 4.124 12 C 0.074 3.926 13 C -0.468 4.468 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.808 5.808 17 Si 0.902 3.098 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.187 4.187 22 C -0.160 4.160 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.382 0.618 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.276 0.724 40 H 0.091 0.909 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 3.162 12.690 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.016 6.016 3 C -0.135 4.135 4 C -0.201 4.201 5 C -0.208 4.208 6 C -0.144 4.144 7 C 0.010 3.990 8 N -0.399 5.399 9 C -0.003 4.003 10 C -0.185 4.185 11 C -0.144 4.144 12 C 0.071 3.929 13 C -0.500 4.500 14 H 0.090 0.910 15 C -0.140 4.140 16 N -0.436 5.436 17 Si 0.728 3.272 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.207 4.207 22 C -0.183 4.183 23 H 0.095 0.905 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.214 0.786 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.652 2.257 12.401 17.859 hybrid contribution -0.439 0.784 -0.409 0.988 sum -13.090 3.041 11.991 18.011 Atomic orbital electron populations 1.23453 0.95421 1.06175 1.04652 1.87136 1.06121 1.10620 1.97763 1.22644 0.98883 0.93315 0.98693 1.22116 1.00581 1.00907 0.96499 1.22229 1.00390 1.01148 0.97046 1.21633 0.91119 1.02165 0.99516 1.21150 0.82189 1.00171 0.95479 1.43844 1.04064 1.72069 1.19889 1.17349 0.90201 1.03754 0.89030 1.20104 0.97505 1.05957 0.94910 1.20933 0.94522 1.02020 0.96898 1.17482 0.92120 0.91182 0.92107 1.19330 0.97703 1.40641 0.92280 0.91033 1.25781 0.94675 0.93945 0.99585 1.69850 1.17164 1.33432 1.23141 0.86477 0.79853 0.81321 0.79595 1.19100 1.20617 1.19321 1.20534 0.97641 1.06092 0.96482 1.19802 0.91765 1.07507 0.99184 0.90495 0.88360 0.90785 0.91599 0.92525 0.91403 0.90429 0.92688 0.91515 0.90757 0.90352 0.93147 0.92420 0.78593 0.89372 0.86414 0.91334 0.89125 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.87 101.05 1.00 -0.06 16 2 S -0.24 -2.83 20.10 -107.50 -2.16 -4.99 16 3 C -0.03 -0.25 0.70 -90.62 -0.06 -0.32 16 4 C -0.14 -1.15 8.32 37.16 0.31 -0.84 16 5 C -0.15 -1.48 7.83 37.16 0.29 -1.19 16 6 C -0.11 -1.22 4.38 -26.73 -0.12 -1.34 16 7 C 0.14 2.09 4.23 -4.04 -0.02 2.07 16 8 N -0.76 -13.71 5.70 -58.50 -0.33 -14.05 16 9 C 0.09 2.11 6.67 -83.69 -0.56 1.55 16 10 C -0.16 -3.96 9.23 -39.77 -0.37 -4.32 16 11 C -0.12 -3.34 8.64 -39.26 -0.34 -3.68 16 12 C 0.07 2.05 5.57 -106.79 -0.60 1.46 16 13 C -0.47 -13.00 9.03 -37.87 -0.34 -13.34 16 14 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 15 C 0.08 1.98 5.13 -17.34 -0.09 1.89 16 16 N -0.81 -21.86 10.96 55.54 0.61 -21.25 16 17 Si 0.90 19.59 29.60 -169.99 -5.03 14.56 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 C -0.19 -4.77 9.74 -39.26 -0.38 -5.15 16 22 C -0.16 -3.71 9.82 -39.77 -0.39 -4.10 16 23 H 0.08 0.60 6.99 -51.93 -0.36 0.23 16 24 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 25 H 0.07 0.52 6.99 -51.93 -0.36 0.15 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.41 6.68 -51.93 -0.35 0.07 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 30 H 0.05 0.47 6.68 -51.93 -0.35 0.13 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.82 6.14 -51.93 -0.32 0.50 16 35 H 0.06 0.99 6.91 -51.93 -0.36 0.63 16 36 H 0.38 6.05 8.47 -40.82 -0.35 5.71 16 37 H 0.09 1.98 6.68 -52.48 -0.35 1.63 16 38 H 0.12 3.29 6.16 -52.49 -0.32 2.96 16 39 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 40 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -29.16 336.07 -9.89 -39.06 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.38 Total: 8.97 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -1.66 Total: -27.37 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.28 Total: -35.29 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.56 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.16 Total: -4.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.16 -9.89 -39.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385335993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.704 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds