Wall clock time and date at job start Tue Mar 31 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81400 * 102.99740 * 2 1 4 4 C 1.52998 * 109.47415 * 59.99912 * 3 2 1 5 5 C 1.53001 * 109.47230 * 299.99791 * 3 2 1 6 6 C 1.53004 * 109.46785 * 180.02562 * 3 2 1 7 7 C 1.52995 * 109.47286 * 64.99856 * 6 3 2 8 8 N 1.46505 * 109.46788 * 179.97438 * 7 6 3 9 9 C 1.38855 * 119.99648 * 179.97438 * 8 7 6 10 10 C 1.39568 * 119.84643 * 359.73541 * 9 8 7 11 11 C 1.36336 * 120.16398 * 179.71732 * 10 9 8 12 12 C 1.40887 * 119.83522 * 0.54986 * 11 10 9 13 13 C 1.41138 * 120.15888 * 179.70431 * 12 11 10 14 14 H 1.07998 * 120.00076 * 204.63105 * 13 12 11 15 15 C 1.39867 * 119.99657 * 24.62602 * 13 12 11 16 16 N 1.30899 * 120.00270 * 17.95962 * 15 13 12 17 17 Si 1.86808 * 119.99673 * 197.95959 * 15 13 12 18 18 H 1.48496 * 109.47088 * 60.00108 * 17 15 13 19 19 H 1.48501 * 109.46866 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46731 * 299.99953 * 17 15 13 21 21 C 1.40883 * 119.68869 * 359.72272 * 12 11 10 22 22 C 1.36343 * 119.84059 * 359.97438 * 21 12 11 23 23 H 1.08995 * 109.47533 * 60.00179 * 1 2 3 24 24 H 1.09008 * 109.47098 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47439 * 300.00037 * 1 2 3 26 26 H 1.08997 * 109.47343 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.47413 * 300.00389 * 4 3 2 28 28 H 1.09003 * 109.46627 * 60.00172 * 4 3 2 29 29 H 1.09004 * 109.47431 * 300.00364 * 5 3 2 30 30 H 1.09001 * 109.46506 * 60.00280 * 5 3 2 31 31 H 1.08995 * 109.47157 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46820 * 304.99473 * 6 3 2 33 33 H 1.09006 * 109.46674 * 184.99745 * 6 3 2 34 34 H 1.08997 * 109.47083 * 60.00264 * 7 6 3 35 35 H 1.08998 * 109.47410 * 299.99789 * 7 6 3 36 36 H 0.96996 * 120.00184 * 0.02562 * 8 7 6 37 37 H 1.08003 * 119.91446 * 359.97233 * 10 9 8 38 38 H 1.08000 * 120.08688 * 180.27597 * 11 10 9 39 39 H 0.97001 * 120.00134 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.08598 * 179.97438 * 21 12 11 41 41 H 1.07998 * 119.92670 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.6339 2.4267 1.2492 5 6 1.6340 2.4267 -1.2493 6 6 3.7423 1.9399 -0.0006 7 6 4.3172 1.3918 -1.3082 8 7 5.7728 1.5575 -1.3090 9 6 6.5196 1.1305 -2.3990 10 6 5.8807 0.5388 -3.4897 11 6 6.6069 0.1224 -4.5658 12 6 8.0069 0.2801 -4.5700 13 6 8.7660 -0.1542 -5.6778 14 1 9.8079 -0.4092 -5.5519 15 6 8.1689 -0.2544 -6.9386 16 7 7.0433 0.3682 -7.1811 17 14 8.9779 -1.2768 -8.2765 18 1 9.0934 -2.6855 -7.8213 19 1 8.1524 -1.2206 -9.5097 20 1 10.3312 -0.7363 -8.5623 21 6 8.6457 0.8730 -3.4631 22 6 7.9061 1.2904 -2.3965 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8795 3.4887 1.2494 27 1 0.5509 2.3038 1.2493 28 1 2.0530 1.9571 2.1392 29 1 2.0529 1.9571 -2.1393 30 1 0.5509 2.3038 -1.2492 31 1 1.8787 3.4888 -1.2490 32 1 4.1700 1.3952 0.8410 33 1 3.9879 2.9982 0.0889 34 1 3.8894 1.9366 -2.1498 35 1 4.0716 0.3336 -1.3978 36 1 6.2150 1.9648 -0.5478 37 1 4.8079 0.4143 -3.4830 38 1 6.1107 -0.3312 -5.4111 39 1 6.6294 0.2990 -8.0557 40 1 9.7186 0.9966 -3.4594 41 1 8.3944 1.7446 -1.5470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385335993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:58 Heat of formation + Delta-G solvation = -8.322603 kcal Electronic energy + Delta-G solvation = -19081.332545 eV Core-core repulsion = 16278.794701 eV Total energy + Delta-G solvation = -2802.537844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85438 -38.28040 -36.26385 -34.63957 -31.50972 -31.33658 -29.92681 -28.87874 -28.30398 -26.11405 -24.37264 -22.81081 -21.66798 -21.30645 -19.14024 -17.94358 -17.07811 -16.82334 -16.54792 -16.18065 -15.66141 -15.31282 -15.11800 -14.74357 -14.54170 -14.38711 -14.03415 -13.81047 -13.65865 -13.59787 -13.28052 -12.99595 -12.83814 -12.72834 -12.68265 -12.53753 -12.31533 -12.14686 -11.88970 -11.75767 -11.55181 -11.16419 -11.03049 -10.59891 -10.25866 -9.39878 -8.63653 -8.53607 -8.14826 -5.99711 0.78240 1.12289 1.19673 1.40431 1.51554 1.60937 1.69064 2.28192 2.84774 2.86622 3.67165 3.76773 3.86181 4.06082 4.27049 4.31258 4.35053 4.36860 4.44860 4.52222 4.64092 4.66049 4.79159 4.81522 4.85030 4.95793 5.01458 5.06324 5.12034 5.15886 5.22170 5.29219 5.32232 5.46833 5.69330 5.81492 5.97674 6.19778 6.39786 6.67589 6.87611 7.09259 7.16506 7.34257 8.49432 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027338 B = 0.003407 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.956683 B = 8215.239554 C = 8798.406395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.314 6.314 3 C -0.012 4.012 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.096 4.096 7 C 0.137 3.863 8 N -0.752 5.752 9 C 0.110 3.890 10 C -0.175 4.175 11 C -0.144 4.144 12 C 0.036 3.964 13 C -0.508 4.508 14 H 0.069 0.931 15 C 0.032 3.968 16 N -0.842 5.842 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.261 1.261 21 C -0.196 4.196 22 C -0.165 4.165 23 H 0.082 0.918 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.282 0.718 40 H 0.098 0.902 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.913 4.109 14.159 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.088 6.088 3 C -0.122 4.122 4 C -0.196 4.196 5 C -0.208 4.208 6 C -0.135 4.135 7 C 0.012 3.988 8 N -0.387 5.387 9 C 0.011 3.989 10 C -0.197 4.197 11 C -0.164 4.164 12 C 0.033 3.967 13 C -0.539 4.539 14 H 0.087 0.913 15 C -0.180 4.180 16 N -0.470 5.470 17 Si 0.798 3.202 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.185 1.185 21 C -0.216 4.216 22 C -0.187 4.187 23 H 0.101 0.899 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.231 0.769 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.601 3.226 13.918 19.726 hybrid contribution -0.253 0.551 -0.708 0.932 sum -13.854 3.777 13.210 19.512 Atomic orbital electron populations 1.23463 0.91857 1.06995 1.05741 1.87380 1.10225 1.13242 1.97934 1.22618 0.97800 0.91808 0.99991 1.22082 1.01155 1.01351 0.95014 1.22215 1.01207 1.01435 0.95895 1.21564 0.92101 1.02852 0.96964 1.21210 0.80555 0.99360 0.97684 1.43896 1.05092 1.70872 1.18858 1.17468 0.90561 1.01491 0.89391 1.20221 0.98054 1.06371 0.95031 1.20850 0.94728 1.03444 0.97391 1.17810 0.92699 0.92854 0.93357 1.19578 0.97956 1.42821 0.93526 0.91325 1.26624 0.95268 0.94521 1.01603 1.69918 1.18543 1.34448 1.24064 0.85343 0.79012 0.79234 0.76571 1.18832 1.19427 1.18546 1.20767 0.98357 1.05813 0.96649 1.20114 0.92007 1.07033 0.99562 0.89906 0.87758 0.89076 0.90203 0.91390 0.91455 0.92718 0.91285 0.90415 0.90649 0.88564 0.93790 0.94190 0.76873 0.88304 0.88419 0.90773 0.88361 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.87 113.37 1.12 -0.51 16 2 S -0.31 -7.00 20.10 -56.49 -1.14 -8.13 16 3 C -0.01 -0.22 0.70 -10.79 -0.01 -0.23 16 4 C -0.14 -1.78 8.32 71.98 0.60 -1.18 16 5 C -0.15 -2.65 7.83 71.98 0.56 -2.09 16 6 C -0.10 -2.01 4.38 30.59 0.13 -1.88 16 7 C 0.14 4.06 4.23 86.38 0.37 4.43 16 8 N -0.75 -25.64 5.70 -338.99 -1.93 -27.57 16 9 C 0.11 4.89 6.67 38.67 0.26 5.14 16 10 C -0.17 -8.63 9.23 22.15 0.20 -8.42 16 11 C -0.14 -8.08 8.64 22.47 0.19 -7.89 16 12 C 0.04 2.04 5.57 -21.27 -0.12 1.93 16 13 C -0.51 -29.21 9.03 23.38 0.21 -29.00 16 14 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 15 C 0.03 1.71 5.13 85.23 0.44 2.15 16 16 N -0.84 -47.00 10.96 21.82 0.24 -46.76 16 17 Si 0.98 40.93 29.60 68.60 2.03 42.96 16 18 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 C -0.20 -10.06 9.74 22.48 0.22 -9.84 16 22 C -0.16 -7.44 9.82 22.15 0.22 -7.22 16 23 H 0.08 1.10 6.99 -2.39 -0.02 1.08 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.09 1.01 6.99 -2.39 -0.02 0.99 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.75 6.68 -2.39 -0.02 0.73 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.23 6.34 -2.38 -0.02 1.21 16 30 H 0.07 1.02 6.68 -2.39 -0.02 1.01 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.04 1.39 6.14 -2.39 -0.01 1.38 16 35 H 0.04 1.36 6.91 -2.39 -0.02 1.35 16 36 H 0.40 11.41 8.47 -92.71 -0.79 10.63 16 37 H 0.10 4.55 6.68 -2.91 -0.02 4.53 16 38 H 0.10 5.77 6.16 -2.91 -0.02 5.75 16 39 H 0.28 14.36 8.30 -92.71 -0.77 13.59 16 40 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 41 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -65.10 336.07 3.83 -61.27 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.23 Total: 32.84 kcal Atomic # 6 Polarization: -59.00 SS G_CDS: 4.40 Total: -54.60 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -1.69 Total: -74.33 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: -7.00 SS G_CDS: -1.14 Total: -8.13 kcal Total: -65.10 3.83 -61.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385335993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.946 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds