Wall clock time and date at job start Tue Mar 31 2020 01:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38913 * 120.75680 * 2 1 4 4 C 1.37986 * 119.34758 * 179.97438 * 3 2 1 5 5 N 1.32010 * 120.89823 * 359.74312 * 4 3 2 6 6 C 1.32328 * 121.64732 * 0.52443 * 5 4 3 7 7 N 1.39145 * 119.72032 * 179.75643 * 6 5 4 8 8 C 1.46961 * 110.99526 * 359.72229 * 7 6 5 9 9 C 1.53059 * 109.36302 * 183.18835 * 8 7 6 10 10 N 1.46952 * 109.36370 * 301.60193 * 9 8 7 11 11 C 1.46906 * 110.99889 * 183.18679 * 10 9 8 12 12 C 1.50701 * 109.46965 * 170.00017 * 11 10 9 13 13 H 1.08005 * 120.00268 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99915 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99666 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00290 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47128 * 89.99741 * 16 14 12 18 18 H 1.48501 * 109.47251 * 209.99489 * 16 14 12 19 19 H 1.48497 * 109.47002 * 329.99797 * 16 14 12 20 20 C 1.46961 * 110.88410 * 59.32054 * 10 9 8 21 21 C 1.46955 * 111.00451 * 123.52380 * 7 6 5 22 22 C 1.38440 * 120.76302 * 179.97438 * 2 1 3 23 23 F 1.35102 * 120.46754 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.46989 * 270.02224 * 1 2 3 25 25 H 1.08999 * 109.47510 * 30.01949 * 1 2 3 26 26 H 1.09001 * 109.47349 * 150.02510 * 1 2 3 27 27 H 1.08001 * 120.32243 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.54389 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.48904 * 63.22467 * 8 7 6 30 30 H 1.08997 * 109.51213 * 303.16753 * 8 7 6 31 31 H 1.08999 * 109.48651 * 181.63251 * 9 8 7 32 32 H 1.08996 * 109.48556 * 61.57139 * 9 8 7 33 33 H 1.08993 * 109.47164 * 289.99960 * 11 10 9 34 34 H 1.08996 * 109.46920 * 49.99994 * 11 10 9 35 35 H 0.97001 * 119.99343 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.48904 * 60.64354 * 20 10 9 37 37 H 1.09002 * 109.49205 * 180.70887 * 20 10 9 38 38 H 1.09008 * 109.48713 * 296.78278 * 21 7 6 39 39 H 1.09002 * 109.48661 * 56.82240 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2173 1.1937 0.0000 4 6 3.5968 1.1598 0.0005 5 7 4.2466 0.0107 0.0061 6 6 3.6079 -1.1482 0.0011 7 7 4.3332 -2.3356 0.0022 8 6 5.7785 -2.0698 0.0026 9 6 6.5385 -3.3960 -0.0766 10 7 6.1612 -4.2425 1.0639 11 6 6.9271 -5.4962 1.0650 12 6 6.6991 -6.2229 2.3654 13 1 6.0505 -5.7960 3.1161 14 6 7.3193 -7.4322 2.5972 15 7 8.1094 -7.9518 1.6831 16 14 7.0362 -8.3335 4.2087 17 1 5.8688 -9.2409 4.0700 18 1 8.2432 -9.1284 4.5500 19 1 6.7715 -7.3476 5.2872 20 6 4.7159 -4.5084 1.0635 21 6 3.9560 -3.1822 1.1426 22 6 2.2150 -1.1896 0.0005 23 9 1.5648 -2.3739 0.0016 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6950 2.1391 -0.0004 28 1 4.1522 2.0860 0.0010 29 1 6.0521 -1.5481 0.9197 30 1 6.0352 -1.4517 -0.8578 31 1 7.6108 -3.2029 -0.0472 32 1 6.2857 -3.9050 -1.0066 33 1 6.5989 -6.1231 0.2360 34 1 7.9883 -5.2737 0.9543 35 1 8.5454 -8.8029 1.8461 36 1 4.4423 -5.0300 0.1464 37 1 4.4595 -5.1263 1.9240 38 1 4.2088 -2.6731 2.0728 39 1 2.8835 -3.3749 1.1135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:18 Heat of formation + Delta-G solvation = 10.997111 kcal Electronic energy + Delta-G solvation = -21858.171411 eV Core-core repulsion = 18522.550908 eV Total energy + Delta-G solvation = -3335.620504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.99062 -40.58637 -38.51071 -35.41680 -33.69867 -32.50340 -30.62406 -30.27261 -28.14511 -27.57937 -25.10287 -23.71688 -22.59113 -22.13576 -21.19911 -19.29244 -17.60839 -17.42648 -17.08360 -16.29973 -15.97929 -15.16648 -14.79866 -14.60461 -14.28365 -14.21341 -14.00476 -13.70319 -13.46870 -13.43423 -13.08864 -12.83316 -12.72621 -12.17445 -11.99147 -11.74281 -11.26364 -10.94297 -10.78281 -10.75221 -10.50123 -10.38584 -9.94614 -9.77427 -9.67182 -9.44936 -9.16441 -8.43771 -8.04620 -7.26831 -6.02540 -4.04180 0.84755 0.93746 3.31766 3.32334 3.38347 3.42605 3.57941 4.12073 4.23787 4.41844 4.42451 4.71202 4.80106 4.91488 5.17756 5.22159 5.27576 5.33238 5.42980 5.49491 5.57573 5.61804 5.75340 5.76629 5.83779 5.86779 5.99193 6.18588 6.31136 6.41539 6.57332 6.60614 6.81451 7.14797 7.28790 7.34810 7.78545 7.81043 8.06792 8.17763 8.53174 9.03062 9.60124 11.08340 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031347 B = 0.003879 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.024129 B = 7215.696116 C = 7714.095057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.188 4.188 4 C 0.121 3.879 5 N -0.501 5.501 6 C 0.305 3.695 7 N -0.474 5.474 8 C 0.075 3.925 9 C 0.052 3.948 10 N -0.539 5.539 11 C 0.193 3.807 12 C -0.508 4.508 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.068 3.932 21 C 0.052 3.948 22 C 0.023 3.977 23 F -0.123 7.123 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.162 0.838 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.031 0.969 33 H -0.007 1.007 34 H 0.032 0.968 35 H 0.261 0.739 36 H 0.033 0.967 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.409 18.153 -4.192 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.210 4.210 4 C -0.037 4.037 5 N -0.215 5.215 6 C 0.070 3.930 7 N -0.190 5.190 8 C -0.052 4.052 9 C -0.077 4.077 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.060 4.060 21 C -0.074 4.074 22 C -0.001 4.001 23 F -0.102 7.102 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.158 0.842 28 H 0.179 0.821 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.011 0.989 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.341 17.842 -4.202 22.097 hybrid contribution -1.031 -0.819 0.548 1.427 sum -13.372 17.023 -3.654 21.953 Atomic orbital electron populations 1.20757 0.89321 1.03773 1.03309 1.20279 0.97489 0.91507 0.97109 1.21769 0.95176 0.97843 1.06170 1.22599 0.91696 0.95587 0.93776 1.67784 1.39903 0.97364 1.16487 1.20122 0.88663 0.90077 0.94114 1.59292 1.07948 1.10571 1.41206 1.22116 0.83261 0.97471 1.02353 1.22179 0.99243 0.92939 0.93378 1.62326 1.04110 1.20293 1.39676 1.19715 0.93092 0.83636 0.96704 1.21149 1.28176 1.03813 1.01569 0.91902 1.24990 0.95205 0.97388 0.96993 1.69964 1.30679 1.19046 1.34067 0.86503 0.77572 0.79652 0.83725 1.20719 1.21252 1.19782 1.22006 0.88736 0.93473 1.01820 1.22626 1.01135 0.94336 0.89260 1.17955 0.89560 0.81792 1.10837 1.91442 1.80884 1.43805 1.94020 0.90140 0.90474 0.90671 0.84215 0.82119 0.92312 0.90003 0.90287 0.95057 0.98939 0.95037 0.92909 0.94892 0.88748 0.92906 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.90 36.00 0.36 -0.51 16 2 C -0.06 -0.58 5.92 -104.30 -0.62 -1.20 16 3 C -0.19 -1.68 9.81 -39.42 -0.39 -2.07 16 4 C 0.12 1.24 11.17 -17.57 -0.20 1.05 16 5 N -0.50 -6.99 8.71 -12.37 -0.11 -7.10 16 6 C 0.30 4.63 6.41 -154.86 -0.99 3.64 16 7 N -0.47 -7.97 4.69 -172.93 -0.81 -8.78 16 8 C 0.07 1.25 4.79 -3.76 -0.02 1.23 16 9 C 0.05 0.98 5.61 -3.77 -0.02 0.96 16 10 N -0.54 -11.91 4.70 -235.91 -1.11 -13.01 16 11 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 12 C -0.51 -14.30 8.47 -34.44 -0.29 -14.59 16 13 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 16 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.07 1.38 5.43 -3.77 -0.02 1.36 16 21 C 0.05 0.89 5.29 -3.77 -0.02 0.87 16 22 C 0.02 0.32 6.93 -39.10 -0.27 0.05 16 23 F -0.12 -1.77 14.12 2.25 0.03 -1.74 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 26 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 27 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 28 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 29 H 0.06 1.02 8.05 -51.93 -0.42 0.61 16 30 H 0.08 1.28 7.83 -51.93 -0.41 0.87 16 31 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H -0.01 -0.20 8.12 -51.93 -0.42 -0.63 16 34 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.98 6.79 -51.93 -0.35 1.63 16 38 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.09 1.42 5.65 -51.93 -0.29 1.12 16 LS Contribution 318.75 15.07 4.80 4.80 Total: -1.00 -31.26 318.75 -9.67 -40.93 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.60 Total: -3.01 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.60 Total: -2.67 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -1.29 Total: -54.97 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.03 Total: -1.74 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.26 -9.67 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.930 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds