Wall clock time and date at job start Tue Mar 31 2020 01:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38913 * 120.75680 * 2 1 4 4 C 1.37986 * 119.34758 * 179.97438 * 3 2 1 5 5 N 1.32010 * 120.89823 * 359.74312 * 4 3 2 6 6 C 1.32328 * 121.64732 * 0.52443 * 5 4 3 7 7 N 1.39145 * 119.72032 * 179.75643 * 6 5 4 8 8 C 1.46961 * 110.99526 * 359.72229 * 7 6 5 9 9 C 1.53059 * 109.36302 * 183.18835 * 8 7 6 10 10 N 1.46952 * 109.36370 * 301.60193 * 9 8 7 11 11 C 1.46906 * 110.99889 * 183.18679 * 10 9 8 12 12 C 1.50701 * 109.46965 * 170.00017 * 11 10 9 13 13 H 1.08005 * 120.00268 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99915 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99666 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00290 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47128 * 89.99741 * 16 14 12 18 18 H 1.48501 * 109.47251 * 209.99489 * 16 14 12 19 19 H 1.48497 * 109.47002 * 329.99797 * 16 14 12 20 20 C 1.46961 * 110.88410 * 59.32054 * 10 9 8 21 21 C 1.46955 * 111.00451 * 123.52380 * 7 6 5 22 22 C 1.38440 * 120.76302 * 179.97438 * 2 1 3 23 23 F 1.35102 * 120.46754 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.46989 * 270.02224 * 1 2 3 25 25 H 1.08999 * 109.47510 * 30.01949 * 1 2 3 26 26 H 1.09001 * 109.47349 * 150.02510 * 1 2 3 27 27 H 1.08001 * 120.32243 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.54389 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.48904 * 63.22467 * 8 7 6 30 30 H 1.08997 * 109.51213 * 303.16753 * 8 7 6 31 31 H 1.08999 * 109.48651 * 181.63251 * 9 8 7 32 32 H 1.08996 * 109.48556 * 61.57139 * 9 8 7 33 33 H 1.08993 * 109.47164 * 289.99960 * 11 10 9 34 34 H 1.08996 * 109.46920 * 49.99994 * 11 10 9 35 35 H 0.97001 * 119.99343 * 180.02562 * 15 14 12 36 36 H 1.09003 * 109.48904 * 60.64354 * 20 10 9 37 37 H 1.09002 * 109.49205 * 180.70887 * 20 10 9 38 38 H 1.09008 * 109.48713 * 296.78278 * 21 7 6 39 39 H 1.09002 * 109.48661 * 56.82240 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2173 1.1937 0.0000 4 6 3.5968 1.1598 0.0005 5 7 4.2466 0.0107 0.0061 6 6 3.6079 -1.1482 0.0011 7 7 4.3332 -2.3356 0.0022 8 6 5.7785 -2.0698 0.0026 9 6 6.5385 -3.3960 -0.0766 10 7 6.1612 -4.2425 1.0639 11 6 6.9271 -5.4962 1.0650 12 6 6.6991 -6.2229 2.3654 13 1 6.0505 -5.7960 3.1161 14 6 7.3193 -7.4322 2.5972 15 7 8.1094 -7.9518 1.6831 16 14 7.0362 -8.3335 4.2087 17 1 5.8688 -9.2409 4.0700 18 1 8.2432 -9.1284 4.5500 19 1 6.7715 -7.3476 5.2872 20 6 4.7159 -4.5084 1.0635 21 6 3.9560 -3.1822 1.1426 22 6 2.2150 -1.1896 0.0005 23 9 1.5648 -2.3739 0.0016 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 1.6950 2.1391 -0.0004 28 1 4.1522 2.0860 0.0010 29 1 6.0521 -1.5481 0.9197 30 1 6.0352 -1.4517 -0.8578 31 1 7.6108 -3.2029 -0.0472 32 1 6.2857 -3.9050 -1.0066 33 1 6.5989 -6.1231 0.2360 34 1 7.9883 -5.2737 0.9543 35 1 8.5454 -8.8029 1.8461 36 1 4.4423 -5.0300 0.1464 37 1 4.4595 -5.1263 1.9240 38 1 4.2088 -2.6731 2.0728 39 1 2.8835 -3.3749 1.1135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:17 Heat of formation + Delta-G solvation = -9.714935 kcal Electronic energy + Delta-G solvation = -21859.069553 eV Core-core repulsion = 18522.550908 eV Total energy + Delta-G solvation = -3336.518645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.01170 -41.62341 -39.85703 -36.91279 -34.84879 -34.33737 -32.11574 -31.47786 -29.35487 -28.86260 -26.81719 -24.99719 -23.86732 -23.57597 -22.58673 -20.80517 -18.65932 -18.48597 -18.34289 -18.18885 -17.00996 -16.77054 -16.08508 -15.94018 -15.92519 -15.64028 -15.23306 -15.09181 -14.78354 -14.40194 -14.08206 -13.85153 -13.73736 -13.68779 -13.37729 -13.10679 -12.86306 -12.68482 -12.59861 -12.39333 -12.17617 -12.15064 -11.62229 -11.28021 -10.96436 -10.62867 -10.61030 -10.36405 -9.17280 -9.10104 -8.21862 -6.32506 -0.05726 0.08235 1.40941 1.42485 1.54199 2.27633 2.39602 2.64261 3.09718 3.13764 3.19496 3.36264 3.65526 3.78809 3.91538 4.01928 4.09231 4.19848 4.22913 4.34213 4.50415 4.59451 4.72008 4.73075 4.74149 4.78398 4.87159 4.91146 4.94734 5.11178 5.13573 5.16367 5.21269 5.49672 5.55540 5.62695 5.99659 6.01789 6.24263 6.53559 6.82369 6.87547 7.37259 8.89576 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.031347 B = 0.003879 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.024129 B = 7215.696116 C = 7714.095057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.166 4.166 4 C 0.115 3.885 5 N -0.523 5.523 6 C 0.275 3.725 7 N -0.487 5.487 8 C 0.092 3.908 9 C 0.052 3.948 10 N -0.544 5.544 11 C 0.209 3.791 12 C -0.525 4.525 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.934 5.934 16 Si 0.971 3.029 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.264 1.264 20 C 0.072 3.928 21 C 0.068 3.932 22 C 0.000 4.000 23 F -0.135 7.135 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.066 0.934 27 H 0.185 0.815 28 H 0.196 0.804 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.023 0.977 33 H -0.038 1.038 34 H 0.008 0.992 35 H 0.265 0.735 36 H 0.021 0.979 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.322 20.743 -3.432 26.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.042 4.042 5 N -0.238 5.238 6 C 0.042 3.958 7 N -0.205 5.205 8 C -0.035 4.035 9 C -0.077 4.077 10 N -0.269 5.269 11 C 0.083 3.917 12 C -0.563 4.563 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.575 5.575 16 Si 0.796 3.204 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.189 1.189 20 C -0.057 4.057 21 C -0.058 4.058 22 C -0.025 4.025 23 F -0.114 7.114 24 H 0.110 0.890 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.202 0.798 28 H 0.213 0.787 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.042 0.958 33 H -0.020 1.020 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.278 20.466 -3.453 25.192 hybrid contribution -0.497 -1.436 0.251 1.540 sum -14.775 19.030 -3.203 24.304 Atomic orbital electron populations 1.20862 0.87070 1.04791 1.04311 1.20738 0.99145 0.90795 0.95589 1.22275 0.94703 0.98934 1.02770 1.23294 0.92912 0.95493 0.92461 1.67734 1.40977 0.97996 1.17118 1.20066 0.89166 0.89831 0.96720 1.59284 1.07714 1.12238 1.41255 1.21883 0.83571 0.95549 1.02489 1.22243 1.00006 0.93591 0.91816 1.62253 1.04917 1.18350 1.41354 1.19372 0.92187 0.84943 0.95234 1.21437 1.28351 1.04463 1.02091 0.91805 1.25933 0.94655 0.98192 1.00818 1.70094 1.31541 1.19591 1.36247 0.85352 0.77747 0.78326 0.79009 1.19737 1.20668 1.18859 1.21948 0.87829 0.95307 1.00573 1.22370 1.01081 0.92688 0.89632 1.18258 0.89336 0.82571 1.12291 1.91400 1.80942 1.44709 1.94301 0.88991 0.87625 0.91530 0.79819 0.78695 0.93053 0.88659 0.89949 0.95848 1.02001 0.97412 0.92616 0.96085 0.90033 0.93467 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.90 71.23 0.70 -0.61 16 2 C -0.05 -0.97 5.92 -19.66 -0.12 -1.09 16 3 C -0.17 -2.22 9.81 22.37 0.22 -2.00 16 4 C 0.12 1.97 11.17 84.61 0.95 2.92 16 5 N -0.52 -13.76 8.71 -193.04 -1.68 -15.44 16 6 C 0.27 8.17 6.41 133.09 0.85 9.02 16 7 N -0.49 -16.60 4.69 -701.04 -3.28 -19.89 16 8 C 0.09 3.12 4.79 86.31 0.41 3.53 16 9 C 0.05 2.06 5.61 86.31 0.48 2.54 16 10 N -0.54 -25.11 4.70 -900.27 -4.23 -29.34 16 11 C 0.21 11.58 4.72 85.56 0.40 11.98 16 12 C -0.53 -30.41 8.47 25.60 0.22 -30.20 16 13 H 0.06 3.61 7.13 -2.91 -0.02 3.59 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 16 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 C 0.07 3.03 5.43 86.31 0.47 3.50 16 21 C 0.07 2.39 5.29 86.31 0.46 2.85 16 22 C 0.00 0.00 6.93 22.58 0.16 0.15 16 23 F -0.13 -3.86 14.12 44.97 0.64 -3.22 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.11 0.63 8.10 -2.39 -0.02 0.61 16 26 H 0.07 0.91 7.72 -2.39 -0.02 0.89 16 27 H 0.18 0.86 8.06 -2.91 -0.02 0.83 16 28 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 29 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 30 H 0.10 2.96 7.83 -2.39 -0.02 2.94 16 31 H 0.08 3.13 8.07 -2.39 -0.02 3.12 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 33 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 34 H 0.01 0.46 8.03 -2.39 -0.02 0.44 16 35 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 36 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 3.58 6.79 -2.39 -0.02 3.56 16 38 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.10 3.28 5.65 -2.39 -0.01 3.27 16 Total: -1.00 -70.20 318.75 0.46 -69.74 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.04 Total: 5.02 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.67 Total: 3.17 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -8.91 Total: -121.53 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.64 Total: -3.22 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.20 0.46 -69.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.027 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds