Wall clock time and date at job start Tue Mar 31 2020 01:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47398 * 2 1 4 4 N 1.28713 * 126.03243 * 274.11437 * 3 2 1 5 5 N 1.28518 * 110.63485 * 179.97438 * 4 3 2 6 6 C 1.33328 * 109.43728 * 359.72966 * 5 4 3 7 7 C 1.37006 * 106.36923 * 0.42422 * 6 5 4 8 8 C 1.47238 * 127.18636 * 179.84519 * 7 6 5 9 9 O 1.21616 * 120.00167 * 185.05126 * 8 7 6 10 10 N 1.34774 * 119.99734 * 5.05652 * 8 7 6 11 11 C 1.46507 * 119.99866 * 174.73681 * 10 8 7 12 12 H 1.09005 * 112.84746 * 336.20072 * 11 10 8 13 13 C 1.53787 * 113.61127 * 107.50496 * 11 10 8 14 14 C 1.53780 * 87.07777 * 139.98183 * 13 11 10 15 15 H 1.09004 * 113.68705 * 219.99801 * 14 13 11 16 16 N 1.46501 * 113.61188 * 89.11729 * 14 13 11 17 17 C 1.36936 * 120.00167 * 107.50405 * 16 14 13 18 18 H 1.07998 * 119.99897 * 359.71756 * 17 16 14 19 19 C 1.38811 * 119.99927 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00300 * 359.71201 * 19 17 16 21 21 Si 1.86805 * 119.99678 * 179.72256 * 19 17 16 22 22 H 1.48492 * 109.47369 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47050 * 120.00001 * 21 19 17 24 24 H 1.48502 * 109.46603 * 239.99385 * 21 19 17 25 25 C 1.53776 * 113.61578 * 205.00064 * 11 10 8 26 26 H 1.08996 * 109.47306 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47017 * 299.99728 * 1 2 3 28 28 H 1.09002 * 109.47158 * 59.99371 * 1 2 3 29 29 H 1.09008 * 109.46463 * 239.99682 * 2 1 3 30 30 H 1.09002 * 109.47158 * 120.00629 * 2 1 3 31 31 H 1.08002 * 126.81151 * 180.27973 * 6 5 4 32 32 H 0.97001 * 120.00909 * 354.73849 * 10 8 7 33 33 H 1.08998 * 113.61673 * 25.43077 * 13 11 10 34 34 H 1.09001 * 113.61061 * 254.52982 * 13 11 10 35 35 H 0.97000 * 120.00243 * 287.49402 * 16 14 13 36 36 H 0.97001 * 119.99987 * 180.02562 * 20 19 17 37 37 H 1.09000 * 113.61789 * 105.47124 * 25 11 10 38 38 H 1.09004 * 113.69376 * 334.57777 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2004 2.1199 -1.0382 5 7 2.6361 3.2801 -0.6978 6 6 2.7514 3.3389 0.6292 7 6 2.3616 2.1149 1.1053 8 6 2.3151 1.6805 2.5114 9 8 2.0338 0.5290 2.7832 10 7 2.5844 2.5591 3.4973 11 6 2.4263 2.1595 4.8979 12 1 1.7263 1.3339 5.0261 13 6 3.7608 1.9585 5.6354 14 6 3.1019 2.6357 6.8487 15 1 3.7638 3.3175 7.3827 16 7 2.4105 1.7001 7.7392 17 6 2.9464 1.3957 8.9620 18 1 3.8811 1.8418 9.2680 19 6 2.2910 0.5097 9.8059 20 7 1.1516 -0.0336 9.4332 21 14 3.0262 0.0885 11.4708 22 1 4.3025 0.8260 11.6492 23 1 2.0757 0.4761 12.5439 24 1 3.2847 -1.3721 11.5424 25 6 2.1683 3.3394 5.8497 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.0878 4.1832 1.2127 32 1 2.8828 3.4561 3.2796 33 1 4.5852 2.5308 5.2102 34 1 4.0133 0.9116 5.8035 35 1 1.5730 1.2964 7.4627 36 1 0.6935 -0.6525 10.0231 37 1 1.1353 3.4074 6.1909 38 1 2.5567 4.2901 5.4843 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020123069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:49 Heat of formation + Delta-G solvation = 94.773395 kcal Electronic energy + Delta-G solvation = -21311.373839 eV Core-core repulsion = 17999.306110 eV Total energy + Delta-G solvation = -3312.067730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.51350 -39.90246 -38.08925 -35.73871 -34.20836 -32.94433 -31.40388 -31.04660 -29.70446 -25.53144 -25.20785 -24.52320 -23.76977 -22.94291 -21.78781 -20.64184 -19.04461 -17.95603 -17.46050 -17.04998 -16.58414 -16.08816 -15.21239 -14.95250 -14.80666 -14.59090 -14.19368 -14.00129 -13.26216 -13.19431 -12.80879 -12.57481 -12.31638 -12.23118 -12.09339 -11.95282 -11.70413 -11.19764 -10.93849 -10.85717 -10.46909 -10.38397 -10.21740 -10.16574 -9.84572 -9.74811 -9.72644 -8.99968 -8.88967 -7.06755 -5.84653 -3.14931 0.74043 1.86381 2.09119 2.94168 3.02660 3.39491 3.45268 3.47584 4.07271 4.27184 4.47165 4.51575 4.55063 4.71049 4.90561 4.94027 5.10110 5.12546 5.25151 5.29571 5.40018 5.53585 5.69694 5.72546 5.79667 5.87972 5.99865 6.05426 6.17606 6.25754 6.48400 6.60853 6.67195 6.91601 7.35471 7.65317 7.96438 8.13308 8.33426 9.44594 9.99860 10.33630 11.37511 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032160 B = 0.003336 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.448999 B = 8391.892965 C = 8973.218113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.251 5.251 4 N -0.063 5.063 5 N -0.276 5.276 6 C -0.003 4.003 7 C -0.065 4.065 8 C 0.590 3.410 9 O -0.531 6.531 10 N -0.697 5.697 11 C 0.127 3.873 12 H 0.116 0.884 13 C -0.183 4.183 14 C 0.171 3.829 15 H 0.071 0.929 16 N -0.705 5.705 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.164 4.164 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.128 0.872 31 H 0.197 0.803 32 H 0.400 0.600 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.075 0.925 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 5.200 -17.726 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.049 5.049 4 N -0.044 5.044 5 N -0.139 5.139 6 C -0.164 4.164 7 C -0.199 4.199 8 C 0.373 3.627 9 O -0.407 6.407 10 N -0.347 5.347 11 C 0.023 3.977 12 H 0.134 0.866 13 C -0.226 4.226 14 C 0.058 3.942 15 H 0.089 0.911 16 N -0.344 5.344 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.740 3.260 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.204 4.204 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.146 0.854 31 H 0.214 0.786 32 H 0.235 0.765 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.033 4.364 -18.858 19.384 hybrid contribution 0.267 -0.156 1.720 1.747 sum 1.300 4.208 -17.138 17.695 Atomic orbital electron populations 1.22096 0.92560 1.04242 1.03353 1.22507 0.96898 0.75580 1.07034 1.47907 1.39798 1.13617 1.03534 1.78242 1.15961 0.98309 1.11860 1.74893 1.15526 1.10893 1.12540 1.23882 1.03374 0.97041 0.92095 1.22133 1.12201 0.94250 0.91361 1.16767 0.77747 0.85689 0.82480 1.90818 1.48746 1.17620 1.83509 1.45859 1.67117 1.15297 1.06423 1.22807 0.99909 0.99154 0.75782 0.86584 1.24342 0.95782 1.02947 0.99517 1.20911 0.92969 0.91539 0.88767 0.91138 1.42206 1.25915 1.50277 1.15972 1.19314 1.04487 1.21417 0.92492 0.90820 1.24783 0.97200 0.99757 0.98947 1.69671 1.16858 1.33989 1.37215 0.86098 0.78177 0.77886 0.83879 1.20445 1.21789 1.21790 1.23927 1.02276 0.96792 0.97363 0.89341 0.91382 0.91585 0.87569 0.85442 0.78575 0.76529 0.91029 0.90838 0.77993 0.93389 0.90633 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.10 0.92 6.78 -4.04 -0.03 0.90 16 3 N -0.25 -2.96 3.39 -57.37 -0.19 -3.15 16 4 N -0.06 -0.82 13.14 60.35 0.79 -0.03 16 5 N -0.28 -3.55 12.35 30.48 0.38 -3.17 16 6 C 0.00 -0.03 11.55 -17.35 -0.20 -0.23 16 7 C -0.06 -0.76 6.98 -82.33 -0.57 -1.34 16 8 C 0.59 7.82 7.80 -12.61 -0.10 7.72 16 9 O -0.53 -8.72 14.40 5.26 0.08 -8.65 16 10 N -0.70 -8.08 5.34 -54.15 -0.29 -8.37 16 11 C 0.13 1.87 4.08 -67.11 -0.27 1.59 16 12 H 0.12 2.07 7.53 -51.93 -0.39 1.68 16 13 C -0.18 -2.95 7.68 -25.92 -0.20 -3.15 16 14 C 0.17 3.11 4.56 -67.12 -0.31 2.80 16 15 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 16 N -0.71 -16.84 5.31 -52.64 -0.28 -17.12 16 17 C -0.25 -6.60 9.97 -15.06 -0.15 -6.75 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 21 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.16 -2.32 7.58 -25.92 -0.20 -2.52 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.13 1.32 6.15 -51.93 -0.32 1.01 16 31 H 0.20 1.22 7.56 -52.49 -0.40 0.83 16 32 H 0.40 3.26 7.76 -40.82 -0.32 2.95 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 326.81 15.07 4.93 4.93 Total: -1.00 -32.64 326.81 -5.73 -38.36 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.09 Total: 9.47 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.74 Total: -2.33 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 1.13 Total: -58.62 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.64 -5.73 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020123069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.138 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds