Wall clock time and date at job start Tue Mar 31 2020 00:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48498 * 109.47195 * 269.99823 * 3 2 1 5 5 H 1.48497 * 109.47212 * 30.00451 * 3 2 1 6 6 H 1.48502 * 109.46718 * 149.99927 * 3 2 1 7 7 C 1.37880 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00063 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99732 * 190.00135 * 10 9 7 12 12 C 1.53002 * 109.47016 * 76.25164 * 11 10 9 13 13 C 1.53002 * 109.46936 * 181.72507 * 12 11 10 14 14 C 1.53002 * 109.46936 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47116 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.47325 * 59.99293 * 15 14 13 17 17 F 1.39897 * 109.47207 * 180.02562 * 15 14 13 18 18 F 1.39908 * 109.46587 * 299.99732 * 15 14 13 19 19 C 1.46896 * 110.99762 * 66.05290 * 10 9 7 20 20 C 1.53006 * 109.46731 * 200.52553 * 19 10 9 21 21 C 1.53001 * 117.49923 * 244.79051 * 20 19 10 22 22 C 1.53001 * 60.00107 * 252.51401 * 21 20 19 23 23 H 0.97012 * 120.00062 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46701 * 60.00201 * 9 7 2 25 25 H 1.09001 * 109.47297 * 300.00190 * 9 7 2 26 26 H 1.09000 * 109.47097 * 196.24728 * 11 10 9 27 27 H 1.08997 * 109.47044 * 316.24923 * 11 10 9 28 28 H 1.09004 * 109.47135 * 301.72576 * 12 11 10 29 29 H 1.08997 * 109.47401 * 61.72722 * 12 11 10 30 30 H 1.08997 * 109.47676 * 299.99904 * 13 12 11 31 31 H 1.09001 * 109.47117 * 60.00352 * 13 12 11 32 32 H 1.09001 * 109.46815 * 299.99645 * 14 13 12 33 33 H 1.08997 * 109.47401 * 60.00215 * 14 13 12 34 34 H 1.09006 * 109.47142 * 320.51808 * 19 10 9 35 35 H 1.08997 * 109.47495 * 80.52614 * 19 10 9 36 36 H 1.09001 * 115.55425 * 30.50360 * 20 19 10 37 37 H 1.09007 * 117.49622 * 0.02562 * 21 20 19 38 38 H 1.08993 * 117.50106 * 145.01976 * 21 20 19 39 39 H 1.08998 * 117.49722 * 252.50559 * 22 21 20 40 40 H 1.08997 * 117.49587 * 107.49199 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 1.5208 -4.8934 -0.2400 12 6 1.1670 -5.0135 -1.7237 13 6 0.4159 -6.3246 -1.9643 14 6 0.0616 -6.4444 -3.4479 15 6 -0.6901 -7.7551 -3.6885 16 9 -1.8632 -7.7666 -2.9263 17 9 -1.0136 -7.8650 -5.0451 18 9 0.1199 -8.8326 -3.3140 19 6 2.9716 -3.6546 1.2510 20 6 4.2587 -4.4538 1.0370 21 6 4.4159 -5.7616 1.8153 22 6 5.2425 -4.5348 2.2059 23 1 -0.4851 0.8401 -0.0004 24 1 0.6239 -2.5566 -0.8904 25 1 0.6246 -2.5571 0.8897 26 1 2.1770 -5.7159 0.0448 27 1 0.6087 -4.9333 0.3554 28 1 0.5359 -4.1742 -2.0159 29 1 2.0813 -5.0044 -2.3171 30 1 1.0470 -7.1639 -1.6722 31 1 -0.4984 -6.3337 -1.3710 32 1 -0.5698 -5.6051 -3.7396 33 1 0.9756 -6.4351 -4.0417 34 1 3.2215 -2.6383 1.5558 35 1 2.3735 -4.1304 2.0281 36 1 4.6753 -4.4136 0.0305 37 1 3.6022 -6.0529 2.4796 38 1 4.9357 -6.5822 1.3210 39 1 6.3063 -4.5484 1.9686 40 1 4.9728 -4.0189 3.1274 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154858607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:04 Heat of formation + Delta-G solvation = -152.312493 kcal Electronic energy + Delta-G solvation = -21939.073993 eV Core-core repulsion = 18145.682667 eV Total energy + Delta-G solvation = -3793.391326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.15710 -47.66607 -47.62790 -37.98797 -36.18310 -34.64157 -32.49419 -30.13156 -27.41934 -26.18696 -24.10721 -22.53485 -22.06845 -21.37641 -20.31373 -19.62270 -18.61840 -18.34794 -17.28630 -16.53720 -15.52031 -15.37482 -14.85743 -14.57284 -14.37004 -14.11674 -14.06849 -13.87593 -13.82919 -13.79880 -13.68518 -13.13706 -12.50657 -12.40826 -12.23906 -11.74589 -11.70921 -11.31663 -11.24847 -11.14095 -10.92701 -10.75299 -10.63525 -10.57170 -10.24319 -10.08858 -9.57680 -9.47435 -9.14483 -8.44050 -7.25623 -6.04131 -4.05107 2.72930 3.31124 3.37396 3.40865 3.75464 3.96775 4.00682 4.13370 4.41564 4.72987 4.90024 4.93505 5.16334 5.26971 5.29542 5.31912 5.41686 5.48725 5.74870 5.79978 5.81181 5.85931 5.93033 6.05583 6.12540 6.17955 6.33310 6.34936 6.48677 6.56280 6.69513 6.82585 7.28763 7.35010 7.80928 8.09981 8.21642 8.55199 9.03318 9.59295 11.06657 Molecular weight = 279.15amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.004212 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.296317 B = 6646.276372 C = 8350.849220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.535 5.535 11 C 0.057 3.943 12 C -0.109 4.109 13 C -0.122 4.122 14 C -0.164 4.164 15 C 0.450 3.550 16 F -0.185 7.185 17 F -0.189 7.189 18 F -0.186 7.186 19 C 0.091 3.909 20 C -0.130 4.130 21 C -0.192 4.192 22 C -0.185 4.185 23 H 0.261 0.739 24 H 0.033 0.967 25 H -0.011 1.011 26 H 0.061 0.939 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.020 0.980 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 -14.595 -3.650 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.259 5.259 11 C -0.071 4.071 12 C -0.147 4.147 13 C -0.160 4.160 14 C -0.203 4.203 15 C 0.396 3.604 16 F -0.166 7.166 17 F -0.171 7.171 18 F -0.168 7.168 19 C -0.037 4.037 20 C -0.149 4.149 21 C -0.229 4.229 22 C -0.222 4.222 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.007 0.993 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.038 0.962 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.425 -14.414 -4.033 15.163 hybrid contribution -0.356 0.544 0.577 0.869 sum 2.068 -13.871 -3.457 14.444 Atomic orbital electron populations 1.69959 1.06058 1.26746 1.51089 1.24981 0.94827 0.99266 0.95480 0.86530 0.79748 0.83205 0.78134 1.20647 1.21376 1.19839 1.21184 0.93537 0.89970 1.49901 0.91809 1.19766 0.90113 0.87382 0.96074 1.61997 1.27781 1.02760 1.33342 1.21996 0.96700 0.93355 0.95097 1.21488 1.00257 0.95369 0.97557 1.21601 1.01863 1.00319 0.92241 1.22937 1.02546 0.92866 1.01909 1.20789 0.78154 0.87972 0.73513 1.93182 1.50526 1.96957 1.75951 1.93174 1.93309 1.96786 1.33804 1.93170 1.72956 1.59398 1.91267 1.21570 0.91389 1.00204 0.90563 1.22459 0.98058 0.97926 0.96467 1.23011 1.03155 0.92035 1.04673 1.22893 0.96990 1.02202 1.00149 0.92954 0.94903 0.99345 0.92059 0.95825 0.90956 0.91228 0.90963 0.90870 0.87109 0.87275 0.89192 0.96194 0.87396 0.89449 0.89558 0.89332 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.51 -13.84 8.22 -34.44 -0.28 -14.12 16 8 H 0.06 1.73 7.32 -52.49 -0.38 1.35 16 9 C 0.19 4.80 4.54 -4.98 -0.02 4.78 16 10 N -0.53 -10.92 4.35 -236.07 -1.03 -11.94 16 11 C 0.06 0.96 4.81 -3.82 -0.02 0.95 16 12 C -0.11 -1.59 5.35 -26.73 -0.14 -1.73 16 13 C -0.12 -1.41 4.97 -26.73 -0.13 -1.54 16 14 C -0.16 -1.64 5.26 -26.73 -0.14 -1.78 16 15 C 0.45 4.90 3.16 37.16 0.12 5.02 16 16 F -0.18 -2.23 16.80 2.25 0.04 -2.19 16 17 F -0.19 -2.15 17.32 2.25 0.04 -2.11 16 18 F -0.19 -2.14 16.80 2.25 0.04 -2.10 16 19 C 0.09 1.72 5.06 -3.82 -0.02 1.70 16 20 C -0.13 -2.03 5.22 -90.61 -0.47 -2.50 16 21 C -0.19 -2.50 10.04 -26.73 -0.27 -2.77 16 22 C -0.18 -2.47 10.25 -26.73 -0.27 -2.74 16 23 H 0.26 7.23 8.31 -40.81 -0.34 6.89 16 24 H 0.03 0.87 6.64 -51.92 -0.34 0.52 16 25 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 26 H 0.06 0.94 7.21 -51.93 -0.37 0.56 16 27 H 0.02 0.42 7.99 -51.93 -0.41 0.00 16 28 H 0.07 1.20 6.77 -51.93 -0.35 0.85 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 31 H 0.07 0.88 7.80 -51.93 -0.41 0.47 16 32 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.91 6.58 -51.93 -0.34 1.57 16 35 H 0.02 0.37 7.72 -51.93 -0.40 -0.03 16 36 H 0.11 1.75 8.14 -51.93 -0.42 1.32 16 37 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -28.59 339.04 -8.20 -36.78 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.36 Total: -1.03 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.76 Total: -13.30 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.29 Total: -37.45 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.11 Total: -6.40 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.59 -8.20 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154858607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.528 kcal (2) G-P(sol) polarization free energy of solvation -28.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds