Wall clock time and date at job start Tue Mar 31 2020 00:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99986 * 2 1 4 4 H 1.48498 * 109.47195 * 269.99823 * 3 2 1 5 5 H 1.48497 * 109.47212 * 30.00451 * 3 2 1 6 6 H 1.48502 * 109.46718 * 149.99927 * 3 2 1 7 7 C 1.37880 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99662 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00063 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99732 * 190.00135 * 10 9 7 12 12 C 1.53002 * 109.47016 * 76.25164 * 11 10 9 13 13 C 1.53002 * 109.46936 * 181.72507 * 12 11 10 14 14 C 1.53002 * 109.46936 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.47116 * 180.02562 * 14 13 12 16 16 F 1.39902 * 109.47325 * 59.99293 * 15 14 13 17 17 F 1.39897 * 109.47207 * 180.02562 * 15 14 13 18 18 F 1.39908 * 109.46587 * 299.99732 * 15 14 13 19 19 C 1.46896 * 110.99762 * 66.05290 * 10 9 7 20 20 C 1.53006 * 109.46731 * 200.52553 * 19 10 9 21 21 C 1.53001 * 117.49923 * 244.79051 * 20 19 10 22 22 C 1.53001 * 60.00107 * 252.51401 * 21 20 19 23 23 H 0.97012 * 120.00062 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46701 * 60.00201 * 9 7 2 25 25 H 1.09001 * 109.47297 * 300.00190 * 9 7 2 26 26 H 1.09000 * 109.47097 * 196.24728 * 11 10 9 27 27 H 1.08997 * 109.47044 * 316.24923 * 11 10 9 28 28 H 1.09004 * 109.47135 * 301.72576 * 12 11 10 29 29 H 1.08997 * 109.47401 * 61.72722 * 12 11 10 30 30 H 1.08997 * 109.47676 * 299.99904 * 13 12 11 31 31 H 1.09001 * 109.47117 * 60.00352 * 13 12 11 32 32 H 1.09001 * 109.46815 * 299.99645 * 14 13 12 33 33 H 1.08997 * 109.47401 * 60.00215 * 14 13 12 34 34 H 1.09006 * 109.47142 * 320.51808 * 19 10 9 35 35 H 1.08997 * 109.47495 * 80.52614 * 19 10 9 36 36 H 1.09001 * 115.55425 * 30.50360 * 20 19 10 37 37 H 1.09007 * 117.49622 * 0.02562 * 21 20 19 38 38 H 1.08993 * 117.50106 * 145.01976 * 21 20 19 39 39 H 1.08998 * 117.49722 * 252.50559 * 22 21 20 40 40 H 1.08997 * 117.49587 * 107.49199 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 1.5208 -4.8934 -0.2400 12 6 1.1670 -5.0135 -1.7237 13 6 0.4159 -6.3246 -1.9643 14 6 0.0616 -6.4444 -3.4479 15 6 -0.6901 -7.7551 -3.6885 16 9 -1.8632 -7.7666 -2.9263 17 9 -1.0136 -7.8650 -5.0451 18 9 0.1199 -8.8326 -3.3140 19 6 2.9716 -3.6546 1.2510 20 6 4.2587 -4.4538 1.0370 21 6 4.4159 -5.7616 1.8153 22 6 5.2425 -4.5348 2.2059 23 1 -0.4851 0.8401 -0.0004 24 1 0.6239 -2.5566 -0.8904 25 1 0.6246 -2.5571 0.8897 26 1 2.1770 -5.7159 0.0448 27 1 0.6087 -4.9333 0.3554 28 1 0.5359 -4.1742 -2.0159 29 1 2.0813 -5.0044 -2.3171 30 1 1.0470 -7.1639 -1.6722 31 1 -0.4984 -6.3337 -1.3710 32 1 -0.5698 -5.6051 -3.7396 33 1 0.9756 -6.4351 -4.0417 34 1 3.2215 -2.6383 1.5558 35 1 2.3735 -4.1304 2.0281 36 1 4.6753 -4.4136 0.0305 37 1 3.6022 -6.0529 2.4796 38 1 4.9357 -6.5822 1.3210 39 1 6.3063 -4.5484 1.9686 40 1 4.9728 -4.0189 3.1274 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154858607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:03 Heat of formation + Delta-G solvation = -167.109640 kcal Electronic energy + Delta-G solvation = -21939.715645 eV Core-core repulsion = 18145.682667 eV Total energy + Delta-G solvation = -3794.032978 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.151 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.05144 -48.56114 -48.53211 -39.40856 -37.37979 -35.94715 -34.48477 -31.35858 -29.31944 -27.48282 -25.64471 -23.90149 -23.11870 -22.54122 -21.68106 -21.04400 -19.50800 -19.25442 -18.59265 -18.16238 -16.91857 -16.69233 -16.40111 -15.64824 -15.51719 -15.42351 -15.31521 -15.07261 -14.97003 -14.71144 -14.69684 -14.44246 -13.97455 -13.66571 -13.57348 -13.35364 -13.19059 -12.83549 -12.56495 -12.33204 -12.28541 -12.28114 -12.11367 -11.95656 -11.79845 -11.43653 -11.25736 -10.98610 -10.66858 -10.53982 -8.97493 -8.18489 -6.27439 1.42158 1.42886 1.53963 1.85541 2.41666 2.85818 2.99024 3.08078 3.14237 3.15277 3.34174 3.93243 3.97798 4.04941 4.14821 4.19889 4.29419 4.42142 4.52213 4.56646 4.68532 4.78446 4.82931 4.84219 4.89856 4.95859 5.04147 5.09645 5.21258 5.32211 5.33533 5.37945 5.42635 5.49552 5.69105 6.11005 6.41474 6.71409 6.89757 7.42146 8.92471 Molecular weight = 279.15amu Principal moments of inertia in cm(-1) A = 0.013316 B = 0.004212 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.296317 B = 6646.276372 C = 8350.849220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.056 3.944 12 C -0.101 4.101 13 C -0.113 4.113 14 C -0.160 4.160 15 C 0.453 3.547 16 F -0.193 7.193 17 F -0.191 7.191 18 F -0.188 7.188 19 C 0.095 3.905 20 C -0.150 4.150 21 C -0.171 4.171 22 C -0.176 4.176 23 H 0.263 0.737 24 H 0.013 0.987 25 H -0.046 1.046 26 H 0.085 0.915 27 H 0.011 0.989 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.058 0.942 35 H 0.018 0.982 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 -15.583 -3.913 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.080 0.920 9 C 0.081 3.919 10 N -0.261 5.261 11 C -0.072 4.072 12 C -0.139 4.139 13 C -0.151 4.151 14 C -0.198 4.198 15 C 0.399 3.601 16 F -0.175 7.175 17 F -0.172 7.172 18 F -0.170 7.170 19 C -0.034 4.034 20 C -0.169 4.169 21 C -0.208 4.208 22 C -0.214 4.214 23 H 0.072 0.928 24 H 0.031 0.969 25 H -0.028 1.028 26 H 0.103 0.897 27 H 0.029 0.971 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.037 0.963 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.186 -15.425 -4.295 16.550 hybrid contribution -0.909 0.794 0.689 1.390 sum 3.276 -14.631 -3.606 15.421 Atomic orbital electron populations 1.70086 1.07671 1.27757 1.52039 1.25858 0.95658 1.02995 0.94968 0.85453 0.78584 0.78576 0.78452 1.19821 1.20968 1.18937 1.21475 0.93556 0.91170 1.49612 0.92031 1.19402 0.90137 0.88901 0.93419 1.61982 1.26801 1.03069 1.34270 1.22121 0.96360 0.92138 0.96542 1.21379 1.00423 0.96155 0.95919 1.21474 1.01388 0.98828 0.93444 1.22911 1.03426 0.92480 1.00935 1.20839 0.77858 0.88114 0.73266 1.93169 1.51126 1.96998 1.76183 1.93171 1.93326 1.96802 1.33939 1.93167 1.72924 1.59599 1.91273 1.21499 0.92897 0.99171 0.89795 1.22195 0.97170 1.00250 0.97298 1.23084 1.02857 0.91607 1.03207 1.23000 0.97638 1.02011 0.98718 0.92793 0.96904 1.02807 0.89658 0.97052 0.93613 0.90492 0.89500 0.91504 0.86786 0.85343 0.92382 0.96349 0.87822 0.89234 0.87311 0.87419 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.52 -29.15 8.22 25.60 0.21 -28.94 16 8 H 0.06 3.41 7.32 -2.91 -0.02 3.39 16 9 C 0.21 10.89 4.54 85.56 0.39 11.28 16 10 N -0.54 -22.42 4.35 -900.78 -3.92 -26.34 16 11 C 0.06 1.90 4.81 86.30 0.41 2.31 16 12 C -0.10 -2.91 5.35 30.60 0.16 -2.75 16 13 C -0.11 -2.47 4.97 30.60 0.15 -2.31 16 14 C -0.16 -2.91 5.26 30.59 0.16 -2.75 16 15 C 0.45 9.18 3.16 71.98 0.23 9.41 16 16 F -0.19 -4.48 16.80 44.97 0.76 -3.73 16 17 F -0.19 -4.05 17.32 44.97 0.78 -3.27 16 18 F -0.19 -3.96 16.80 44.97 0.76 -3.20 16 19 C 0.09 3.62 5.06 86.31 0.44 4.05 16 20 C -0.15 -4.48 5.22 -10.79 -0.06 -4.53 16 21 C -0.17 -3.94 10.04 30.59 0.31 -3.63 16 22 C -0.18 -4.29 10.25 30.60 0.31 -3.98 16 23 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 24 H 0.01 0.72 6.64 -2.38 -0.02 0.70 16 25 H -0.05 -2.66 8.12 -2.39 -0.02 -2.68 16 26 H 0.09 2.46 7.21 -2.39 -0.02 2.44 16 27 H 0.01 0.41 7.99 -2.39 -0.02 0.39 16 28 H 0.05 1.56 6.77 -2.39 -0.02 1.55 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 1.67 7.80 -2.39 -0.02 1.65 16 31 H 0.07 1.55 7.80 -2.39 -0.02 1.53 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 2.55 6.58 -2.38 -0.02 2.54 16 35 H 0.02 0.69 7.72 -2.39 -0.02 0.67 16 36 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.09 2.05 8.04 -2.38 -0.02 2.04 16 38 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -62.66 339.04 4.88 -57.78 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.01 Total: 9.59 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 3.18 Total: -21.20 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.63 Total: -82.03 kcal Atomic # 9 Polarization: -12.49 SS G_CDS: 2.29 Total: -10.20 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -62.66 4.88 -57.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154858607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.334 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds