Wall clock time and date at job start Tue Mar 31 2020 01:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48498 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46988 * 299.99604 * 3 2 1 6 6 H 1.48494 * 109.47245 * 59.99786 * 3 2 1 7 7 C 1.37881 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46843 * 184.79251 * 9 7 2 11 11 C 1.46897 * 111.00193 * 298.98522 * 10 9 7 12 12 C 1.53002 * 109.47298 * 287.83000 * 11 10 9 13 13 C 1.52998 * 109.47493 * 179.48246 * 12 11 10 14 14 H 1.09001 * 110.27522 * 55.63345 * 13 12 11 15 15 C 1.54943 * 110.31132 * 177.83275 * 13 12 11 16 16 C 1.55308 * 100.94195 * 155.35375 * 15 13 12 17 17 C 1.54380 * 102.25490 * 325.86735 * 16 15 13 18 18 O 1.43244 * 107.58673 * 21.35420 * 17 16 15 19 19 C 1.46901 * 111.00202 * 62.94119 * 10 9 7 20 20 C 1.50701 * 109.47193 * 66.04257 * 19 10 9 21 21 C 1.34510 * 125.79017 * 90.00226 * 20 19 10 22 22 C 1.41382 * 106.84395 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83996 * 359.97438 * 22 21 20 24 24 O 1.34303 * 125.79097 * 269.98120 * 20 19 10 25 25 H 0.97002 * 120.00448 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47005 * 64.79648 * 9 7 2 27 27 H 1.08993 * 109.47497 * 304.79288 * 9 7 2 28 28 H 1.08999 * 109.47098 * 47.82940 * 11 10 9 29 29 H 1.09000 * 109.47199 * 167.82639 * 11 10 9 30 30 H 1.09007 * 109.46614 * 299.48052 * 12 11 10 31 31 H 1.09001 * 109.46922 * 59.47607 * 12 11 10 32 32 H 1.08999 * 111.12639 * 273.27589 * 15 13 12 33 33 H 1.09002 * 111.12598 * 37.43630 * 15 13 12 34 34 H 1.08995 * 110.85054 * 207.67099 * 16 15 13 35 35 H 1.09005 * 111.01808 * 84.13969 * 16 15 13 36 36 H 1.08994 * 109.82991 * 261.84142 * 17 16 15 37 37 H 1.09000 * 109.83077 * 140.86228 * 17 16 15 38 38 H 1.09002 * 109.46686 * 306.04598 * 19 10 9 39 39 H 1.09000 * 109.47200 * 186.04537 * 19 10 9 40 40 H 1.08003 * 126.57582 * 359.94555 * 21 20 19 41 41 H 1.07993 * 126.58054 * 180.02562 * 22 21 20 42 42 H 1.07998 * 125.79305 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2014 -3.6132 0.1169 11 6 3.1337 -3.6306 -1.0182 12 6 2.3956 -4.0892 -2.2775 13 6 3.3635 -4.0949 -3.4625 14 1 4.2319 -4.7143 -3.2378 15 6 2.6492 -4.6087 -4.7378 16 6 3.5126 -3.9468 -5.8462 17 6 3.9088 -2.6043 -5.1950 18 8 3.7745 -2.7549 -3.7768 19 6 2.9268 -3.5554 1.3930 20 6 1.9637 -3.7856 2.5291 21 6 1.6489 -4.9789 3.0640 22 6 0.7158 -4.7316 4.0969 23 6 0.5165 -3.4017 4.1318 24 8 1.2745 -2.8339 3.1795 25 1 -0.4851 0.8400 -0.0004 26 1 0.6907 -2.5952 -0.9295 27 1 0.5612 -2.5205 0.8441 28 1 3.5332 -2.6288 -1.1757 29 1 3.9520 -4.3187 -0.8058 30 1 2.0041 -5.0947 -2.1233 31 1 1.5716 -3.4063 -2.4846 32 1 2.6936 -5.6959 -4.8020 33 1 1.6185 -4.2564 -4.7799 34 1 2.9248 -3.7815 -6.7490 35 1 4.3955 -4.5475 -6.0649 36 1 3.2472 -1.8130 -5.5471 37 1 4.9419 -2.3628 -5.4449 38 1 3.3908 -2.5753 1.5030 39 1 3.6974 -4.3261 1.4082 40 1 2.0346 -5.9415 2.7619 41 1 0.2525 -5.4687 4.7358 42 1 -0.1415 -2.8792 4.8103 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189498708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:29 Heat of formation + Delta-G solvation = -31.551219 kcal Electronic energy + Delta-G solvation = -22348.594001 eV Core-core repulsion = 19102.296017 eV Total energy + Delta-G solvation = -3246.297984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.85660 -39.23335 -36.89723 -32.60338 -32.48219 -32.05092 -31.76421 -29.62952 -27.35772 -26.47269 -24.26162 -23.21303 -21.57345 -21.06384 -20.94506 -19.84019 -19.33441 -16.87737 -16.63304 -16.09884 -15.85075 -15.41880 -14.86499 -14.60470 -14.08803 -13.95776 -13.78071 -13.51069 -12.91029 -12.45918 -12.41004 -12.17574 -12.06922 -11.76418 -11.62811 -11.54636 -11.26876 -11.03315 -10.82688 -10.77311 -10.68510 -10.46497 -10.11068 -10.00195 -9.87720 -9.50341 -9.28046 -9.18554 -8.31956 -7.85828 -7.15372 -5.92871 -3.99432 2.41192 3.20494 3.33710 3.41095 3.45480 3.73025 4.07209 4.50066 4.59722 4.80594 4.96534 5.17919 5.33375 5.36728 5.39311 5.45373 5.59541 5.61120 5.66523 5.74377 5.80840 5.85106 5.92043 6.00316 6.08795 6.16861 6.23376 6.29980 6.37470 6.42979 6.55038 6.75898 6.83809 6.98862 7.12252 7.31014 7.38386 7.63693 7.86847 7.99033 8.08419 8.28209 8.37055 9.07912 9.65844 11.13087 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.006023 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.052376 B = 4647.400517 C = 6309.896924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.185 3.815 10 N -0.540 5.540 11 C 0.062 3.938 12 C -0.107 4.107 13 C 0.084 3.916 14 H 0.064 0.936 15 C -0.151 4.151 16 C -0.156 4.156 17 C 0.050 3.950 18 O -0.368 6.368 19 C 0.133 3.867 20 C 0.032 3.968 21 C -0.222 4.222 22 C -0.223 4.223 23 C -0.052 4.052 24 O -0.156 6.156 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -10.278 -3.798 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.578 4.578 8 H 0.075 0.925 9 C 0.060 3.940 10 N -0.264 5.264 11 C -0.066 4.066 12 C -0.145 4.145 13 C 0.026 3.974 14 H 0.082 0.918 15 C -0.189 4.189 16 C -0.194 4.194 17 C -0.027 4.027 18 O -0.288 6.288 19 C 0.005 3.995 20 C -0.019 4.019 21 C -0.242 4.242 22 C -0.242 4.242 23 C -0.120 4.120 24 O -0.050 6.050 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.010 -10.121 -3.729 11.893 hybrid contribution 0.617 1.420 -0.085 1.550 sum 5.627 -8.701 -3.814 11.042 Atomic orbital electron populations 1.69956 1.05950 1.26412 1.50580 1.24885 0.94677 0.98912 0.94982 0.86642 0.80281 0.84290 0.77434 1.19834 1.21079 1.21141 1.21658 0.93142 0.91975 1.51055 0.92527 1.19810 0.91043 0.85294 0.97870 1.62608 1.17097 1.47318 0.99387 1.21876 0.93765 1.00701 0.90213 1.21641 0.98199 1.01987 0.92698 1.23004 0.96125 0.83511 0.94740 0.91803 1.23306 1.00356 1.00944 0.94270 1.23107 1.00199 0.96941 0.99128 1.23066 1.00451 0.97066 0.82164 1.88564 1.89195 1.30044 1.20984 1.20381 0.91515 1.01546 0.86080 1.22422 0.97161 0.86225 0.96122 1.21393 1.03908 0.98102 1.00757 1.21669 1.03823 0.95915 1.02831 1.23895 0.99527 0.93379 0.95224 1.84216 1.45318 1.36996 1.38455 0.93100 0.95257 0.94521 0.92235 0.93416 0.91036 0.90398 0.90264 0.90090 0.90446 0.90949 0.91587 0.92045 0.92107 0.90058 0.84253 0.84393 0.79096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.54 -15.07 7.34 -34.44 -0.25 -15.33 16 8 H 0.06 1.58 5.95 -52.48 -0.31 1.27 16 9 C 0.19 4.85 4.80 -4.98 -0.02 4.82 16 10 N -0.54 -11.62 4.66 -237.52 -1.11 -12.73 16 11 C 0.06 1.21 4.72 -3.82 -0.02 1.19 16 12 C -0.11 -1.86 5.02 -26.73 -0.13 -1.99 16 13 C 0.08 1.25 3.43 -25.71 -0.09 1.16 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 15 C -0.15 -1.80 6.57 -24.48 -0.16 -1.96 16 16 C -0.16 -1.65 7.02 -24.78 -0.17 -1.83 16 17 C 0.05 0.66 7.79 37.88 0.30 0.95 16 18 O -0.37 -6.44 10.68 -35.23 -0.38 -6.82 16 19 C 0.13 2.65 5.31 -4.97 -0.03 2.63 16 20 C 0.03 0.65 5.89 -35.63 -0.21 0.44 16 21 C -0.22 -3.93 10.81 -39.70 -0.43 -4.36 16 22 C -0.22 -3.65 10.91 -39.70 -0.43 -4.08 16 23 C -0.05 -0.90 12.09 29.42 0.36 -0.55 16 24 O -0.16 -3.40 9.96 5.70 0.06 -3.34 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.03 0.82 6.67 -51.93 -0.35 0.48 16 27 H 0.04 1.07 6.66 -51.93 -0.35 0.72 16 28 H 0.06 1.34 5.90 -51.93 -0.31 1.03 16 29 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.58 6.74 -51.93 -0.35 1.23 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.34 6.59 -51.93 -0.34 0.99 16 39 H 0.08 1.35 7.86 -51.93 -0.41 0.95 16 40 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.19 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -32.05 338.29 -8.61 -40.65 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.60 Total: 3.01 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.40 Total: -17.04 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.37 Total: -38.78 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.32 Total: -10.16 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.05 -8.61 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189498708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.103 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds