Wall clock time and date at job start Tue Mar 31 2020 01:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99872 * 2 1 4 4 H 1.48498 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46988 * 299.99604 * 3 2 1 6 6 H 1.48494 * 109.47245 * 59.99786 * 3 2 1 7 7 C 1.37881 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46843 * 184.79251 * 9 7 2 11 11 C 1.46897 * 111.00193 * 298.98522 * 10 9 7 12 12 C 1.53002 * 109.47298 * 287.83000 * 11 10 9 13 13 C 1.52998 * 109.47493 * 179.48246 * 12 11 10 14 14 H 1.09001 * 110.27522 * 55.63345 * 13 12 11 15 15 C 1.54943 * 110.31132 * 177.83275 * 13 12 11 16 16 C 1.55308 * 100.94195 * 155.35375 * 15 13 12 17 17 C 1.54380 * 102.25490 * 325.86735 * 16 15 13 18 18 O 1.43244 * 107.58673 * 21.35420 * 17 16 15 19 19 C 1.46901 * 111.00202 * 62.94119 * 10 9 7 20 20 C 1.50701 * 109.47193 * 66.04257 * 19 10 9 21 21 C 1.34510 * 125.79017 * 90.00226 * 20 19 10 22 22 C 1.41382 * 106.84395 * 179.97438 * 21 20 19 23 23 C 1.34515 * 106.83996 * 359.97438 * 22 21 20 24 24 O 1.34303 * 125.79097 * 269.98120 * 20 19 10 25 25 H 0.97002 * 120.00448 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47005 * 64.79648 * 9 7 2 27 27 H 1.08993 * 109.47497 * 304.79288 * 9 7 2 28 28 H 1.08999 * 109.47098 * 47.82940 * 11 10 9 29 29 H 1.09000 * 109.47199 * 167.82639 * 11 10 9 30 30 H 1.09007 * 109.46614 * 299.48052 * 12 11 10 31 31 H 1.09001 * 109.46922 * 59.47607 * 12 11 10 32 32 H 1.08999 * 111.12639 * 273.27589 * 15 13 12 33 33 H 1.09002 * 111.12598 * 37.43630 * 15 13 12 34 34 H 1.08995 * 110.85054 * 207.67099 * 16 15 13 35 35 H 1.09005 * 111.01808 * 84.13969 * 16 15 13 36 36 H 1.08994 * 109.82991 * 261.84142 * 17 16 15 37 37 H 1.09000 * 109.83077 * 140.86228 * 17 16 15 38 38 H 1.09002 * 109.46686 * 306.04598 * 19 10 9 39 39 H 1.09000 * 109.47200 * 186.04537 * 19 10 9 40 40 H 1.08003 * 126.57582 * 359.94555 * 21 20 19 41 41 H 1.07993 * 126.58054 * 180.02562 * 22 21 20 42 42 H 1.07998 * 125.79305 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2014 -3.6132 0.1169 11 6 3.1337 -3.6306 -1.0182 12 6 2.3956 -4.0892 -2.2775 13 6 3.3635 -4.0949 -3.4625 14 1 4.2319 -4.7143 -3.2378 15 6 2.6492 -4.6087 -4.7378 16 6 3.5126 -3.9468 -5.8462 17 6 3.9088 -2.6043 -5.1950 18 8 3.7745 -2.7549 -3.7768 19 6 2.9268 -3.5554 1.3930 20 6 1.9637 -3.7856 2.5291 21 6 1.6489 -4.9789 3.0640 22 6 0.7158 -4.7316 4.0969 23 6 0.5165 -3.4017 4.1318 24 8 1.2745 -2.8339 3.1795 25 1 -0.4851 0.8400 -0.0004 26 1 0.6907 -2.5952 -0.9295 27 1 0.5612 -2.5205 0.8441 28 1 3.5332 -2.6288 -1.1757 29 1 3.9520 -4.3187 -0.8058 30 1 2.0041 -5.0947 -2.1233 31 1 1.5716 -3.4063 -2.4846 32 1 2.6936 -5.6959 -4.8020 33 1 1.6185 -4.2564 -4.7799 34 1 2.9248 -3.7815 -6.7490 35 1 4.3955 -4.5475 -6.0649 36 1 3.2472 -1.8130 -5.5471 37 1 4.9419 -2.3628 -5.4449 38 1 3.3908 -2.5753 1.5030 39 1 3.6974 -4.3261 1.4082 40 1 2.0346 -5.9415 2.7619 41 1 0.2525 -5.4687 4.7358 42 1 -0.1415 -2.8792 4.8103 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189498708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:29 Heat of formation + Delta-G solvation = -52.820139 kcal Electronic energy + Delta-G solvation = -22349.516290 eV Core-core repulsion = 19102.296017 eV Total energy + Delta-G solvation = -3247.220273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.30246 -40.38279 -38.61662 -34.67590 -33.92247 -33.46254 -32.86547 -31.11413 -29.13107 -27.96310 -26.02257 -24.83966 -22.70719 -22.43091 -22.18153 -21.27701 -20.99508 -18.67635 -17.89555 -17.73481 -17.25502 -16.87224 -16.62895 -15.95297 -15.77802 -15.56672 -15.23383 -14.79570 -14.42390 -13.96571 -13.80406 -13.52029 -13.45088 -13.31094 -13.11086 -13.02717 -12.71325 -12.61067 -12.53900 -12.29566 -12.21376 -11.90294 -11.76623 -11.63029 -11.47748 -11.44405 -10.68099 -10.56023 -10.36154 -9.31440 -8.99737 -8.13453 -6.29214 0.97116 1.31679 1.32298 1.44101 1.85782 2.36288 2.37576 3.00605 3.12725 3.38956 3.67853 3.92064 3.98150 4.05886 4.20597 4.26968 4.31933 4.39096 4.44721 4.51918 4.56311 4.68583 4.75338 4.86808 4.87981 4.94208 4.96940 5.03041 5.06079 5.16341 5.22187 5.28805 5.33794 5.39360 5.40117 5.45906 5.77980 5.81525 6.04591 6.20639 6.29015 6.47163 6.50835 6.88563 7.39558 8.90052 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.006023 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.052376 B = 4647.400517 C = 6309.896924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.064 3.936 12 C -0.100 4.100 13 C 0.081 3.919 14 H 0.086 0.914 15 C -0.147 4.147 16 C -0.144 4.144 17 C 0.037 3.963 18 O -0.411 6.411 19 C 0.134 3.866 20 C -0.010 4.010 21 C -0.208 4.208 22 C -0.218 4.218 23 C -0.066 4.066 24 O -0.200 6.200 25 H 0.262 0.738 26 H 0.001 0.999 27 H 0.004 0.996 28 H 0.023 0.977 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.120 0.880 40 H 0.166 0.834 41 H 0.175 0.825 42 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -12.255 -4.034 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.082 3.918 10 N -0.258 5.258 11 C -0.063 4.063 12 C -0.138 4.138 13 C 0.023 3.977 14 H 0.103 0.897 15 C -0.185 4.185 16 C -0.181 4.181 17 C -0.039 4.039 18 O -0.332 6.332 19 C 0.007 3.993 20 C -0.061 4.061 21 C -0.228 4.228 22 C -0.236 4.236 23 C -0.133 4.133 24 O -0.096 6.096 25 H 0.071 0.929 26 H 0.019 0.981 27 H 0.022 0.978 28 H 0.041 0.959 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.138 0.862 40 H 0.184 0.816 41 H 0.193 0.807 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.263 -12.115 -3.972 14.205 hybrid contribution 0.218 1.977 0.046 1.990 sum 6.482 -10.138 -3.926 12.657 Atomic orbital electron populations 1.70073 1.07368 1.27335 1.51741 1.25703 0.95549 1.02463 0.94865 0.85646 0.79088 0.80134 0.77698 1.19351 1.20417 1.20410 1.21875 0.92983 0.93013 1.50123 0.93000 1.19307 0.91273 0.86458 0.94798 1.62562 1.17537 1.44607 1.01095 1.21948 0.94387 0.99658 0.90337 1.21581 0.97475 1.01659 0.93121 1.23113 0.96487 0.83151 0.94899 0.89656 1.23296 0.99415 1.02668 0.93113 1.23091 1.01006 0.95142 0.98875 1.23292 1.01264 0.98714 0.80647 1.88520 1.89437 1.31714 1.23518 1.20480 0.92174 1.01314 0.85357 1.22611 0.98888 0.87159 0.97406 1.21784 1.02980 0.98084 0.99973 1.22107 1.02965 0.96072 1.02499 1.24694 0.99302 0.94559 0.94767 1.84168 1.46652 1.38781 1.39990 0.92933 0.98092 0.97788 0.95857 0.89904 0.89126 0.94589 0.87383 0.91569 0.88752 0.88655 0.92570 0.90597 0.95021 0.86185 0.81643 0.80717 0.76200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.81 13.29 21.45 0.28 -57.53 16 2 C 0.01 0.78 5.46 84.66 0.46 1.24 16 3 Si 0.95 46.94 29.54 68.60 2.03 48.96 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.54 -31.65 7.34 25.60 0.19 -31.46 16 8 H 0.05 3.03 5.95 -2.91 -0.02 3.01 16 9 C 0.21 11.50 4.80 85.56 0.41 11.92 16 10 N -0.53 -23.53 4.66 -905.38 -4.22 -27.74 16 11 C 0.06 2.51 4.72 86.30 0.41 2.92 16 12 C -0.10 -3.52 5.02 30.59 0.15 -3.36 16 13 C 0.08 2.32 3.43 31.26 0.11 2.43 16 14 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.15 -3.22 6.57 32.05 0.21 -3.01 16 16 C -0.14 -2.67 7.02 31.86 0.22 -2.45 16 17 C 0.04 0.96 7.79 72.45 0.56 1.53 16 18 O -0.41 -14.52 10.68 -148.98 -1.59 -16.11 16 19 C 0.13 5.42 5.31 85.56 0.45 5.87 16 20 C -0.01 -0.42 5.89 24.83 0.15 -0.27 16 21 C -0.21 -7.00 10.81 22.19 0.24 -6.76 16 22 C -0.22 -6.63 10.91 22.19 0.24 -6.38 16 23 C -0.07 -2.26 12.09 66.97 0.81 -1.45 16 24 O -0.20 -8.95 9.96 -2.50 -0.02 -8.98 16 25 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 26 H 0.00 0.06 6.67 -2.39 -0.02 0.05 16 27 H 0.00 0.25 6.66 -2.39 -0.02 0.23 16 28 H 0.02 1.08 5.90 -2.39 -0.01 1.07 16 29 H 0.08 2.64 7.81 -2.39 -0.02 2.62 16 30 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 31 H 0.04 1.54 6.74 -2.39 -0.02 1.52 16 32 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.63 8.06 -2.39 -0.02 1.61 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.03 1.44 6.59 -2.39 -0.02 1.43 16 39 H 0.12 3.80 7.86 -2.39 -0.02 3.78 16 40 H 0.17 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.18 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.22 5.75 8.06 -2.91 -0.02 5.72 16 Total: -1.00 -73.82 338.29 2.09 -71.72 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.99 Total: 18.91 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 4.62 Total: -29.24 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -3.93 Total: -85.27 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -1.62 Total: -25.09 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -73.82 2.09 -71.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189498708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.905 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds