Wall clock time and date at job start Tue Mar 31 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.78599 * 2 1 4 4 C 1.41388 * 106.83843 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.57799 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47107 * 145.02197 * 5 4 3 7 7 C 1.52998 * 109.47050 * 265.02177 * 5 4 3 8 8 N 1.46498 * 109.47363 * 25.02386 * 5 4 3 9 9 C 1.34781 * 120.00203 * 154.99942 * 8 5 4 10 10 O 1.21285 * 120.00023 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99915 * 179.97438 * 9 8 5 12 12 C 1.53005 * 109.46847 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46896 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99589 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00139 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47285 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47029 * 120.00046 * 18 16 14 21 21 H 1.48494 * 109.47179 * 239.99715 * 18 16 14 22 22 C 1.34506 * 106.83998 * 359.97438 * 4 3 2 23 23 C 1.50707 * 125.79149 * 180.02562 * 22 4 3 24 24 O 1.34304 * 125.79068 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.47225 * 90.00307 * 1 2 3 26 26 H 1.09000 * 109.47407 * 210.00312 * 1 2 3 27 27 H 1.09004 * 109.47697 * 330.00270 * 1 2 3 28 28 H 1.08001 * 126.58408 * 359.77293 * 3 2 1 29 29 H 1.08999 * 109.47325 * 60.00571 * 7 5 4 30 30 H 1.09005 * 109.46913 * 180.02562 * 7 5 4 31 31 H 1.08997 * 109.47002 * 300.00139 * 7 5 4 32 32 H 0.96997 * 120.00172 * 335.00126 * 8 5 4 33 33 H 1.08999 * 109.47211 * 300.00275 * 11 9 8 34 34 H 1.08997 * 109.47060 * 60.00154 * 11 9 8 35 35 H 1.08999 * 109.47489 * 300.00165 * 12 11 9 36 36 H 1.09005 * 109.46770 * 60.00348 * 12 11 9 37 37 H 1.08999 * 109.47203 * 300.00361 * 13 12 11 38 38 H 1.08997 * 109.47019 * 60.00210 * 13 12 11 39 39 H 0.97003 * 119.99401 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47115 * 179.97438 * 23 22 4 41 41 H 1.09001 * 109.46876 * 299.98438 * 23 22 4 42 42 H 1.09004 * 109.46931 * 59.98031 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2935 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8731 1.4851 -0.0003 6 1 5.6494 0.9962 0.5883 7 6 5.3641 1.6716 -1.4373 8 7 4.5674 2.7929 0.5849 9 6 5.5481 3.5234 1.1518 10 8 6.6837 3.0982 1.1770 11 6 5.2337 4.8689 1.7532 12 6 6.5128 5.4831 2.3255 13 6 6.1937 6.8495 2.9356 14 6 7.4537 7.4548 3.4987 15 1 8.3886 6.9188 3.4281 16 6 7.4130 8.6929 4.1040 17 7 6.2744 9.3454 4.1904 18 14 8.9749 9.4435 4.8014 19 1 10.1125 8.5152 4.5787 20 1 9.2494 10.7353 4.1222 21 1 8.8046 9.6765 6.2580 22 6 3.5813 -0.7120 -0.0004 23 6 4.7706 -1.6378 -0.0003 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3635 0.8900 0.5138 28 1 1.9664 2.1205 -0.0034 29 1 4.5879 2.1605 -2.0259 30 1 6.2629 2.2882 -1.4370 31 1 5.5915 0.6985 -1.8727 32 1 3.6593 3.1331 0.5644 33 1 4.8279 5.5252 0.9833 34 1 4.5007 4.7480 2.5508 35 1 6.9182 4.8267 3.0955 36 1 7.2461 5.6040 1.5281 37 1 5.7886 7.5057 2.1653 38 1 5.4603 6.7291 3.7328 39 1 6.2459 10.2167 4.6160 40 1 4.4260 -2.6719 0.0004 41 1 5.3727 -1.4558 -0.8905 42 1 5.3731 -1.4551 0.8895 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118369708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:44 Heat of formation + Delta-G solvation = -56.032262 kcal Electronic energy + Delta-G solvation = -21092.050674 eV Core-core repulsion = 17844.691113 eV Total energy + Delta-G solvation = -3247.359561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.92301 -39.53247 -36.20533 -34.12705 -33.30328 -32.92037 -31.98840 -30.21693 -29.74625 -27.66919 -25.19505 -24.19232 -23.10110 -21.67383 -20.20688 -20.08236 -19.23384 -17.07748 -16.59672 -16.52291 -16.07633 -15.53337 -15.21238 -14.56112 -14.37939 -13.93596 -13.76761 -13.66929 -13.49109 -13.34032 -13.00995 -12.98265 -12.67313 -12.58459 -12.24402 -12.11640 -11.96668 -11.70254 -11.34011 -11.19882 -10.79812 -10.56470 -10.49518 -9.90136 -9.64442 -9.63668 -9.23279 -9.01974 -8.97193 -8.40942 -8.30083 -5.95604 -3.96747 1.43596 2.27975 2.63144 2.98121 3.34703 3.35191 3.42430 3.48471 4.32612 4.46954 4.51362 4.65602 4.88844 5.01285 5.09481 5.10877 5.14726 5.19959 5.27561 5.31671 5.40579 5.43772 5.45938 5.58126 5.72919 5.75008 5.76470 5.90819 5.97507 6.08324 6.28167 6.31192 6.57265 6.76873 6.92847 6.97362 7.20073 7.66809 7.74462 7.86998 8.05589 8.49236 8.51462 9.10715 9.67181 11.15992 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.002749 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.340194 B =10183.895302 C =10733.099612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.016 4.016 3 C -0.201 4.201 4 C -0.180 4.180 5 C 0.214 3.786 6 H 0.093 0.907 7 C -0.156 4.156 8 N -0.732 5.732 9 C 0.514 3.486 10 O -0.538 6.538 11 C -0.139 4.139 12 C -0.094 4.094 13 C 0.020 3.980 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.006 4.006 23 C -0.076 4.076 24 O -0.174 6.174 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.398 0.602 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.259 0.741 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 -21.428 -11.504 27.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.220 4.220 4 C -0.182 4.182 5 C 0.109 3.891 6 H 0.111 0.889 7 C -0.215 4.215 8 N -0.386 5.386 9 C 0.302 3.698 10 O -0.414 6.414 11 C -0.179 4.179 12 C -0.132 4.132 13 C -0.017 4.017 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.056 4.056 23 C -0.132 4.132 24 O -0.071 6.071 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.165 0.835 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.388 -21.870 -11.414 27.171 hybrid contribution 0.225 0.897 0.375 0.998 sum -11.164 -20.972 -11.040 26.198 Atomic orbital electron populations 1.20300 0.85030 1.04120 1.03461 1.22340 0.93937 0.84002 1.06260 1.21314 0.91880 0.99477 1.09314 1.20233 0.95383 0.93326 1.09269 1.19045 0.92586 0.82720 0.94726 0.88931 1.22132 1.01825 1.02150 0.95371 1.46174 1.12178 1.19283 1.60931 1.21259 0.84669 0.87136 0.76695 1.90665 1.21146 1.71986 1.57651 1.21847 1.02728 0.92101 1.01178 1.21439 0.93507 0.98585 0.99704 1.19140 0.96982 0.90011 0.95605 1.21319 0.94979 1.02496 1.36656 0.92522 1.25024 0.96093 0.97207 0.96254 1.69978 1.24949 1.14146 1.44719 0.86541 0.83733 0.79113 0.78680 1.19680 1.21050 1.21059 1.22084 0.83327 0.93868 1.06329 1.20359 0.91339 0.97576 1.03952 1.83965 1.16184 1.35002 1.71943 0.90157 0.90641 0.89216 0.83488 0.92401 0.91428 0.91955 0.76747 0.89395 0.89428 0.92718 0.92705 0.96619 0.96620 0.93153 0.90550 0.89526 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.42 36.00 0.37 -0.04 16 2 C -0.02 -0.15 7.32 -35.63 -0.26 -0.41 16 3 C -0.20 -1.99 9.97 -39.70 -0.40 -2.38 16 4 C -0.18 -1.97 5.26 -104.75 -0.55 -2.52 16 5 C 0.21 2.55 2.78 -69.09 -0.19 2.36 16 6 H 0.09 1.23 7.45 -51.93 -0.39 0.84 16 7 C -0.16 -1.70 9.47 37.16 0.35 -1.35 16 8 N -0.73 -9.33 5.05 -54.93 -0.28 -9.60 16 9 C 0.51 8.49 7.79 -10.98 -0.09 8.40 16 10 O -0.54 -10.84 15.65 5.55 0.09 -10.76 16 11 C -0.14 -2.35 5.70 -27.88 -0.16 -2.51 16 12 C -0.09 -2.07 4.44 -26.73 -0.12 -2.19 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 18 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C -0.01 -0.06 7.32 -35.62 -0.26 -0.32 16 23 C -0.08 -0.55 10.03 36.01 0.36 -0.19 16 24 O -0.17 -1.88 10.65 5.70 0.06 -1.82 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.15 1.19 7.25 -52.49 -0.38 0.81 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 32 H 0.40 4.12 7.12 -40.82 -0.29 3.83 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.53 8.06 -51.93 -0.42 0.11 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -34.61 355.28 -7.47 -42.08 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.93 Total: -1.15 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.49 Total: -14.69 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.46 Total: -36.20 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.15 Total: -12.57 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.61 -7.47 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118369708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.950 kcal (2) G-P(sol) polarization free energy of solvation -34.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds