Wall clock time and date at job start Tue Mar 31 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.78599 * 2 1 4 4 C 1.41388 * 106.83843 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.57799 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47107 * 145.02197 * 5 4 3 7 7 C 1.52998 * 109.47050 * 265.02177 * 5 4 3 8 8 N 1.46498 * 109.47363 * 25.02386 * 5 4 3 9 9 C 1.34781 * 120.00203 * 154.99942 * 8 5 4 10 10 O 1.21285 * 120.00023 * 0.02562 * 9 8 5 11 11 C 1.50700 * 119.99915 * 179.97438 * 9 8 5 12 12 C 1.53005 * 109.46847 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46896 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99589 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00139 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99833 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47285 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47029 * 120.00046 * 18 16 14 21 21 H 1.48494 * 109.47179 * 239.99715 * 18 16 14 22 22 C 1.34506 * 106.83998 * 359.97438 * 4 3 2 23 23 C 1.50707 * 125.79149 * 180.02562 * 22 4 3 24 24 O 1.34304 * 125.79068 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.47225 * 90.00307 * 1 2 3 26 26 H 1.09000 * 109.47407 * 210.00312 * 1 2 3 27 27 H 1.09004 * 109.47697 * 330.00270 * 1 2 3 28 28 H 1.08001 * 126.58408 * 359.77293 * 3 2 1 29 29 H 1.08999 * 109.47325 * 60.00571 * 7 5 4 30 30 H 1.09005 * 109.46913 * 180.02562 * 7 5 4 31 31 H 1.08997 * 109.47002 * 300.00139 * 7 5 4 32 32 H 0.96997 * 120.00172 * 335.00126 * 8 5 4 33 33 H 1.08999 * 109.47211 * 300.00275 * 11 9 8 34 34 H 1.08997 * 109.47060 * 60.00154 * 11 9 8 35 35 H 1.08999 * 109.47489 * 300.00165 * 12 11 9 36 36 H 1.09005 * 109.46770 * 60.00348 * 12 11 9 37 37 H 1.08999 * 109.47203 * 300.00361 * 13 12 11 38 38 H 1.08997 * 109.47019 * 60.00210 * 13 12 11 39 39 H 0.97003 * 119.99401 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47115 * 179.97438 * 23 22 4 41 41 H 1.09001 * 109.46876 * 299.98438 * 23 22 4 42 42 H 1.09004 * 109.46931 * 59.98031 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2935 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8731 1.4851 -0.0003 6 1 5.6494 0.9962 0.5883 7 6 5.3641 1.6716 -1.4373 8 7 4.5674 2.7929 0.5849 9 6 5.5481 3.5234 1.1518 10 8 6.6837 3.0982 1.1770 11 6 5.2337 4.8689 1.7532 12 6 6.5128 5.4831 2.3255 13 6 6.1937 6.8495 2.9356 14 6 7.4537 7.4548 3.4987 15 1 8.3886 6.9188 3.4281 16 6 7.4130 8.6929 4.1040 17 7 6.2744 9.3454 4.1904 18 14 8.9749 9.4435 4.8014 19 1 10.1125 8.5152 4.5787 20 1 9.2494 10.7353 4.1222 21 1 8.8046 9.6765 6.2580 22 6 3.5813 -0.7120 -0.0004 23 6 4.7706 -1.6378 -0.0003 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3635 0.8900 0.5138 28 1 1.9664 2.1205 -0.0034 29 1 4.5879 2.1605 -2.0259 30 1 6.2629 2.2882 -1.4370 31 1 5.5915 0.6985 -1.8727 32 1 3.6593 3.1331 0.5644 33 1 4.8279 5.5252 0.9833 34 1 4.5007 4.7480 2.5508 35 1 6.9182 4.8267 3.0955 36 1 7.2461 5.6040 1.5281 37 1 5.7886 7.5057 2.1653 38 1 5.4603 6.7291 3.7328 39 1 6.2459 10.2167 4.6160 40 1 4.4260 -2.6719 0.0004 41 1 5.3727 -1.4558 -0.8905 42 1 5.3731 -1.4551 0.8895 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118369708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:42 Heat of formation + Delta-G solvation = -77.274506 kcal Electronic energy + Delta-G solvation = -21092.971807 eV Core-core repulsion = 17844.691113 eV Total energy + Delta-G solvation = -3248.280694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.66721 -40.82741 -37.30155 -36.06253 -34.14605 -33.90094 -33.74664 -31.27695 -30.31530 -29.44731 -26.15489 -25.66177 -24.22284 -22.73987 -21.83012 -21.16760 -20.29881 -18.56849 -17.81974 -17.59349 -17.33735 -16.73596 -16.50581 -16.39874 -15.33096 -15.19798 -14.91070 -14.50247 -14.27633 -14.22259 -14.13701 -13.78701 -13.74913 -13.64721 -13.47926 -13.24488 -13.07717 -12.88120 -12.63197 -12.59658 -12.51003 -12.36320 -12.11281 -11.55259 -11.46368 -11.24806 -10.80208 -10.65684 -10.54414 -10.14207 -9.12766 -8.20156 -6.29978 0.70882 1.39593 1.39827 1.50930 1.53808 1.66987 1.96426 2.22203 2.42405 3.12852 3.58374 3.74211 3.91292 3.97276 4.22418 4.24780 4.27162 4.31889 4.36643 4.45932 4.60585 4.69236 4.72215 4.73809 4.79432 4.82301 4.97555 4.97676 5.01787 5.06780 5.11560 5.18183 5.21019 5.34349 5.51356 5.56048 5.57151 5.76133 5.87469 6.19189 6.27924 6.55296 6.85725 7.26645 7.38770 8.91646 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.031161 B = 0.002749 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.340194 B =10183.895302 C =10733.099612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.021 4.021 3 C -0.216 4.216 4 C -0.196 4.196 5 C 0.217 3.783 6 H 0.077 0.923 7 C -0.151 4.151 8 N -0.714 5.714 9 C 0.518 3.482 10 O -0.580 6.580 11 C -0.131 4.131 12 C -0.081 4.081 13 C 0.026 3.974 14 C -0.546 4.546 15 H 0.051 0.949 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.962 3.038 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.014 4.014 23 C -0.078 4.078 24 O -0.186 6.186 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.163 0.837 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.412 0.588 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.040 0.960 36 H 0.041 0.959 37 H 0.001 0.999 38 H 0.001 0.999 39 H 0.265 0.735 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -21.968 -11.929 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.070 4.070 3 C -0.235 4.235 4 C -0.198 4.198 5 C 0.112 3.888 6 H 0.095 0.905 7 C -0.209 4.209 8 N -0.367 5.367 9 C 0.306 3.694 10 O -0.460 6.460 11 C -0.170 4.170 12 C -0.120 4.120 13 C -0.011 4.011 14 C -0.584 4.584 15 H 0.069 0.931 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.201 1.201 22 C -0.064 4.064 23 C -0.134 4.134 24 O -0.084 6.084 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.180 0.820 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.249 0.751 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.232 -22.425 -11.858 28.162 hybrid contribution 0.401 1.032 0.491 1.211 sum -11.831 -21.393 -11.366 26.960 Atomic orbital electron populations 1.20471 0.82589 1.05142 1.04658 1.23026 0.95392 0.83509 1.05093 1.21565 0.91511 1.00524 1.09874 1.20184 0.95291 0.93608 1.10676 1.19030 0.92896 0.82009 0.94874 0.90543 1.22075 1.01003 1.02926 0.94886 1.45984 1.12110 1.19210 1.59377 1.21045 0.84563 0.87051 0.76698 1.90655 1.22900 1.72852 1.59581 1.21684 1.00387 0.92662 1.02297 1.21155 0.95738 0.96328 0.98747 1.19025 0.95539 0.91878 0.94704 1.21722 0.95846 1.03315 1.37545 0.93071 1.25911 0.99665 0.97590 0.96380 1.70077 1.27056 1.14658 1.45208 0.85444 0.79409 0.78297 0.78187 1.19224 1.20024 1.20068 1.22560 0.83872 0.94272 1.05689 1.20486 0.90517 0.97856 1.04527 1.83982 1.16507 1.35779 1.72106 0.88771 0.90003 0.87798 0.81971 0.91651 0.93456 0.90107 0.75091 0.87340 0.87575 0.94126 0.94001 0.98030 0.98112 0.92664 0.89244 0.88330 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.42 71.23 0.74 0.08 16 2 C -0.02 -0.36 7.32 24.83 0.18 -0.17 16 3 C -0.22 -3.91 9.97 22.19 0.22 -3.68 16 4 C -0.20 -4.03 5.26 -19.94 -0.10 -4.14 16 5 C 0.22 4.98 2.78 44.24 0.12 5.11 16 6 H 0.08 2.03 7.45 -2.39 -0.02 2.01 16 7 C -0.15 -3.14 9.47 71.98 0.68 -2.46 16 8 N -0.71 -17.37 5.05 -446.10 -2.25 -19.63 16 9 C 0.52 16.86 7.79 87.66 0.68 17.54 16 10 O -0.58 -23.67 15.65 -3.04 -0.05 -23.71 16 11 C -0.13 -4.33 5.70 29.85 0.17 -4.16 16 12 C -0.08 -3.64 4.44 30.60 0.14 -3.50 16 13 C 0.03 1.37 4.97 29.85 0.15 1.52 16 14 C -0.55 -32.46 9.11 25.60 0.23 -32.22 16 15 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -56.78 13.29 21.44 0.28 -56.49 16 18 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 C -0.01 -0.27 7.32 24.83 0.18 -0.08 16 23 C -0.08 -1.04 10.03 71.24 0.71 -0.33 16 24 O -0.19 -3.79 10.65 -2.51 -0.03 -3.81 16 25 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.10 0.65 8.14 -2.38 -0.02 0.64 16 28 H 0.16 2.26 7.25 -2.91 -0.02 2.24 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 32 H 0.41 7.74 7.12 -92.71 -0.66 7.08 16 33 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.04 1.94 8.10 -2.38 -0.02 1.93 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 1.06 8.06 -2.39 -0.02 1.04 16 42 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -74.76 355.28 4.89 -69.86 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.34 Total: 12.13 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 4.57 Total: -25.90 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.97 Total: -76.12 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.07 Total: -27.53 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.76 4.89 -69.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118369708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.410 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds