Wall clock time and date at job start Tue Mar 31 2020 00:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46804 * 299.99529 * 3 2 1 6 6 H 1.48494 * 109.47372 * 59.99620 * 3 2 1 7 7 C 1.37883 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00454 * 171.40283 * 7 2 1 9 9 C 1.50699 * 119.99751 * 351.41056 * 7 2 1 10 10 C 1.53000 * 115.56367 * 82.22132 * 9 7 2 11 11 N 1.46904 * 109.46924 * 39.88404 * 10 9 7 12 12 C 1.46902 * 111.00216 * 174.00779 * 11 10 9 13 13 H 1.08998 * 113.57075 * 20.56703 * 12 11 10 14 14 C 1.56734 * 114.61612 * 246.07949 * 12 11 10 15 15 C 1.49807 * 81.20174 * 201.65346 * 14 12 11 16 16 H 1.08995 * 113.85011 * 290.89155 * 15 14 12 17 17 C 1.51638 * 129.70863 * 134.27840 * 15 14 12 18 18 C 1.56239 * 101.47791 * 226.97947 * 17 15 14 19 19 H 1.09003 * 110.36400 * 267.48457 * 18 17 15 20 20 C 1.50697 * 110.36588 * 145.15911 * 18 17 15 21 21 O 1.20820 * 120.00164 * 241.45246 * 20 18 17 22 22 O 1.34232 * 119.99880 * 61.45678 * 20 18 17 23 23 C 1.55759 * 104.82642 * 26.32008 * 18 17 15 24 24 C 1.49491 * 114.62225 * 154.99739 * 12 11 10 25 25 H 1.09000 * 113.10829 * 46.43129 * 24 12 11 26 26 C 1.53005 * 117.50086 * 296.53656 * 9 7 2 27 27 C 1.52995 * 59.99936 * 252.50935 * 26 9 7 28 28 H 0.96995 * 119.99901 * 5.02182 * 1 2 3 29 29 H 1.09001 * 109.47110 * 159.87142 * 10 9 7 30 30 H 1.08998 * 109.47808 * 279.88194 * 10 9 7 31 31 H 1.00908 * 110.99403 * 297.95443 * 11 10 9 32 32 H 1.08989 * 114.57426 * 314.73621 * 14 12 11 33 33 H 1.09004 * 114.56943 * 88.57991 * 14 12 11 34 34 H 1.08998 * 111.02200 * 345.02740 * 17 15 14 35 35 H 1.08999 * 111.02302 * 108.93483 * 17 15 14 36 36 H 0.96699 * 117.00058 * 180.02562 * 22 20 18 37 37 H 1.08994 * 110.49867 * 250.16295 * 23 18 17 38 38 H 1.09004 * 110.49047 * 127.49379 * 23 18 17 39 39 H 1.08998 * 117.49790 * 145.01866 * 26 9 7 40 40 H 1.09007 * 117.49487 * 0.02562 * 26 9 7 41 41 H 1.09004 * 117.49988 * 107.48466 * 27 26 9 42 42 H 1.08999 * 117.50066 * 252.50469 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0754 -1.1994 -0.1393 9 6 1.2638 -2.4917 0.1960 10 6 0.6015 -3.0691 -1.0565 11 7 1.4909 -2.8827 -2.2108 12 6 0.9523 -3.5498 -3.4036 13 1 -0.1186 -3.7449 -3.3478 14 6 1.8106 -4.7548 -3.9212 15 6 1.0700 -4.4414 -5.1851 16 1 0.0059 -4.6734 -5.1415 17 6 1.5866 -4.3175 -6.6054 18 6 0.9105 -2.9869 -7.0672 19 1 -0.0399 -3.1950 -7.5586 20 6 1.8256 -2.2273 -7.9927 21 8 2.2157 -1.1256 -7.6865 22 8 2.2073 -2.7748 -9.1574 23 6 0.6772 -2.1818 -5.7544 24 6 1.4131 -2.9708 -4.7026 25 1 2.4878 -2.7918 -4.7339 26 6 0.5514 -2.7040 1.5334 27 6 1.8301 -3.4818 1.2158 28 1 -0.4850 0.8368 -0.0735 29 1 0.4138 -4.1329 -0.9108 30 1 -0.3423 -2.5551 -1.2384 31 1 1.6537 -1.9025 -2.3872 32 1 2.8825 -4.5624 -3.9642 33 1 1.5578 -5.7164 -3.4742 34 1 2.6730 -4.2298 -6.6200 35 1 1.2554 -5.1570 -7.2166 36 1 2.7952 -2.2497 -9.7175 37 1 -0.3862 -2.1330 -5.5204 38 1 1.0961 -1.1793 -5.8420 39 1 -0.3891 -3.2550 1.5207 40 1 0.6182 -1.9048 2.2716 41 1 2.7385 -3.1945 1.7453 42 1 1.7309 -4.5445 0.9944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608178442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:37 Heat of formation + Delta-G solvation = -2.069176 kcal Electronic energy + Delta-G solvation = -22162.462642 eV Core-core repulsion = 18917.443096 eV Total energy + Delta-G solvation = -3245.019546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47137 -39.91674 -36.75734 -36.29860 -34.42140 -31.89693 -31.84018 -28.67327 -26.10875 -25.44448 -24.41918 -22.37056 -21.08011 -20.87685 -20.48617 -19.41465 -18.86208 -18.17468 -16.77070 -16.04773 -15.79532 -15.16447 -14.59072 -14.48352 -14.26197 -13.83678 -13.73293 -13.57349 -12.85963 -12.60792 -12.50011 -12.06331 -11.74223 -11.58605 -11.34939 -11.21560 -11.15911 -10.97977 -10.93755 -10.79102 -10.54085 -10.44380 -10.36749 -10.36482 -10.07344 -9.45369 -8.91048 -8.71833 -8.40476 -8.01841 -7.29419 -5.98840 -4.01965 2.06339 2.88086 3.31275 3.40515 3.45113 3.71798 4.44604 4.62367 4.71588 4.79932 4.86895 5.00039 5.07964 5.27600 5.33129 5.36586 5.49071 5.54117 5.66697 5.78464 5.80433 5.95803 6.03220 6.07407 6.21134 6.23636 6.31303 6.37869 6.45140 6.53557 6.59420 6.64677 6.82288 6.86792 7.04900 7.17376 7.50588 7.54602 7.74666 7.94040 8.18926 8.48682 8.59746 9.00958 9.61922 11.09287 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.004675 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.666555 B = 5987.959470 C = 7098.117848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.069 3.931 3 Si 0.884 3.116 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.481 4.481 8 H 0.062 0.938 9 C 0.054 3.946 10 C 0.107 3.893 11 N -0.663 5.663 12 C 0.088 3.912 13 H 0.076 0.924 14 C -0.095 4.095 15 C -0.164 4.164 16 H 0.097 0.903 17 C -0.082 4.082 18 C -0.086 4.086 19 H 0.111 0.889 20 C 0.483 3.517 21 O -0.509 6.509 22 O -0.518 6.518 23 C -0.102 4.102 24 C -0.144 4.144 25 H 0.098 0.902 26 C -0.169 4.169 27 C -0.207 4.207 28 H 0.258 0.742 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.357 0.643 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.407 0.593 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.282 -8.563 -15.109 17.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.133 4.133 3 Si 0.712 3.288 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.022 4.022 11 N -0.295 5.295 12 C -0.023 4.023 13 H 0.094 0.906 14 C -0.133 4.133 15 C -0.183 4.183 16 H 0.115 0.885 17 C -0.120 4.120 18 C -0.106 4.106 19 H 0.129 0.871 20 C 0.326 3.674 21 O -0.397 6.397 22 O -0.330 6.330 23 C -0.139 4.139 24 C -0.163 4.163 25 H 0.116 0.884 26 C -0.207 4.207 27 C -0.244 4.244 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.179 0.821 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.265 0.735 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.377 -8.843 -14.538 17.020 hybrid contribution -0.052 1.990 -0.681 2.104 sum 0.325 -6.853 -15.219 16.694 Atomic orbital electron populations 1.69998 1.05846 1.26402 1.49714 1.24981 0.94730 0.98709 0.94914 0.86655 0.80477 0.84145 0.77489 1.19664 1.21170 1.21150 1.20439 0.93584 0.88616 1.49326 0.92027 1.18789 0.96559 0.93514 0.85824 1.21388 0.93538 0.96143 0.91122 1.60485 1.46739 1.20095 1.02177 1.22880 0.96232 0.95045 0.88138 0.90603 1.22777 0.99361 0.98261 0.92915 1.23297 1.00928 1.01113 0.92945 0.88450 1.21688 1.00090 0.94157 0.96063 1.22614 0.97606 0.95881 0.94452 0.87122 1.23505 0.79222 0.84753 0.79969 1.90730 1.53727 1.21120 1.74095 1.84551 1.64225 1.52406 1.31795 1.21595 1.01399 0.99765 0.91149 1.23560 1.01219 0.94616 0.96861 0.88414 1.22565 0.93102 1.01524 1.03546 1.22962 0.97255 0.95629 1.08533 0.93252 0.94646 0.95234 0.82135 0.89156 0.92100 0.90971 0.90815 0.73459 0.90587 0.89491 0.92201 0.90453 0.90821 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.57 13.12 55.43 0.73 -23.84 16 2 C 0.07 1.86 5.40 -17.82 -0.10 1.76 16 3 Si 0.88 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.48 -12.82 7.48 -34.44 -0.26 -13.08 16 8 H 0.06 1.69 7.83 -52.49 -0.41 1.27 16 9 C 0.05 1.31 1.70 -155.66 -0.26 1.05 16 10 C 0.11 2.38 5.64 -3.82 -0.02 2.35 16 11 N -0.66 -13.32 6.37 -120.86 -0.77 -14.09 16 12 C 0.09 1.40 4.06 -80.51 -0.33 1.07 16 13 H 0.08 1.20 7.37 -51.93 -0.38 0.81 16 14 C -0.09 -1.27 7.93 -40.86 -0.32 -1.59 16 15 C -0.16 -1.87 4.23 -102.91 -0.43 -2.31 16 16 H 0.10 1.06 7.60 -51.93 -0.39 0.66 16 17 C -0.08 -0.81 6.13 -25.68 -0.16 -0.97 16 18 C -0.09 -0.90 3.50 -88.56 -0.31 -1.21 16 19 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 20 C 0.48 5.58 7.57 36.00 0.27 5.86 16 21 O -0.51 -7.74 16.06 -18.75 -0.30 -8.04 16 22 O -0.52 -4.46 13.40 -39.26 -0.53 -4.99 16 23 C -0.10 -1.32 6.19 -26.42 -0.16 -1.48 16 24 C -0.14 -2.02 3.74 -105.02 -0.39 -2.41 16 25 H 0.10 1.49 7.42 -51.93 -0.39 1.10 16 26 C -0.17 -4.01 9.69 -26.73 -0.26 -4.27 16 27 C -0.21 -4.61 9.88 -26.73 -0.26 -4.87 16 28 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 29 H 0.04 0.73 7.93 -51.93 -0.41 0.32 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.36 7.92 7.58 -39.29 -0.30 7.63 16 32 H 0.09 1.25 7.54 -51.94 -0.39 0.86 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.41 1.87 9.10 45.56 0.41 2.29 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.32 6.57 -51.93 -0.34 0.98 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 42 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -29.84 341.38 -9.70 -39.54 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -5.95 Total: 10.28 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -3.00 Total: -20.11 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.04 Total: -37.93 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.83 Total: -13.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.84 -9.70 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.473 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds