Wall clock time and date at job start Tue Mar 31 2020 00:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99969 * 2 1 4 4 H 1.48505 * 109.47013 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46804 * 299.99529 * 3 2 1 6 6 H 1.48494 * 109.47372 * 59.99620 * 3 2 1 7 7 C 1.37883 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00454 * 171.40283 * 7 2 1 9 9 C 1.50699 * 119.99751 * 351.41056 * 7 2 1 10 10 C 1.53000 * 115.56367 * 82.22132 * 9 7 2 11 11 N 1.46904 * 109.46924 * 39.88404 * 10 9 7 12 12 C 1.46902 * 111.00216 * 174.00779 * 11 10 9 13 13 H 1.08998 * 113.57075 * 20.56703 * 12 11 10 14 14 C 1.56734 * 114.61612 * 246.07949 * 12 11 10 15 15 C 1.49807 * 81.20174 * 201.65346 * 14 12 11 16 16 H 1.08995 * 113.85011 * 290.89155 * 15 14 12 17 17 C 1.51638 * 129.70863 * 134.27840 * 15 14 12 18 18 C 1.56239 * 101.47791 * 226.97947 * 17 15 14 19 19 H 1.09003 * 110.36400 * 267.48457 * 18 17 15 20 20 C 1.50697 * 110.36588 * 145.15911 * 18 17 15 21 21 O 1.20820 * 120.00164 * 241.45246 * 20 18 17 22 22 O 1.34232 * 119.99880 * 61.45678 * 20 18 17 23 23 C 1.55759 * 104.82642 * 26.32008 * 18 17 15 24 24 C 1.49491 * 114.62225 * 154.99739 * 12 11 10 25 25 H 1.09000 * 113.10829 * 46.43129 * 24 12 11 26 26 C 1.53005 * 117.50086 * 296.53656 * 9 7 2 27 27 C 1.52995 * 59.99936 * 252.50935 * 26 9 7 28 28 H 0.96995 * 119.99901 * 5.02182 * 1 2 3 29 29 H 1.09001 * 109.47110 * 159.87142 * 10 9 7 30 30 H 1.08998 * 109.47808 * 279.88194 * 10 9 7 31 31 H 1.00908 * 110.99403 * 297.95443 * 11 10 9 32 32 H 1.08989 * 114.57426 * 314.73621 * 14 12 11 33 33 H 1.09004 * 114.56943 * 88.57991 * 14 12 11 34 34 H 1.08998 * 111.02200 * 345.02740 * 17 15 14 35 35 H 1.08999 * 111.02302 * 108.93483 * 17 15 14 36 36 H 0.96699 * 117.00058 * 180.02562 * 22 20 18 37 37 H 1.08994 * 110.49867 * 250.16295 * 23 18 17 38 38 H 1.09004 * 110.49047 * 127.49379 * 23 18 17 39 39 H 1.08998 * 117.49790 * 145.01866 * 26 9 7 40 40 H 1.09007 * 117.49487 * 0.02562 * 26 9 7 41 41 H 1.09004 * 117.49988 * 107.48466 * 27 26 9 42 42 H 1.08999 * 117.50066 * 252.50469 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0754 -1.1994 -0.1393 9 6 1.2638 -2.4917 0.1960 10 6 0.6015 -3.0691 -1.0565 11 7 1.4909 -2.8827 -2.2108 12 6 0.9523 -3.5498 -3.4036 13 1 -0.1186 -3.7449 -3.3478 14 6 1.8106 -4.7548 -3.9212 15 6 1.0700 -4.4414 -5.1851 16 1 0.0059 -4.6734 -5.1415 17 6 1.5866 -4.3175 -6.6054 18 6 0.9105 -2.9869 -7.0672 19 1 -0.0399 -3.1950 -7.5586 20 6 1.8256 -2.2273 -7.9927 21 8 2.2157 -1.1256 -7.6865 22 8 2.2073 -2.7748 -9.1574 23 6 0.6772 -2.1818 -5.7544 24 6 1.4131 -2.9708 -4.7026 25 1 2.4878 -2.7918 -4.7339 26 6 0.5514 -2.7040 1.5334 27 6 1.8301 -3.4818 1.2158 28 1 -0.4850 0.8368 -0.0735 29 1 0.4138 -4.1329 -0.9108 30 1 -0.3423 -2.5551 -1.2384 31 1 1.6537 -1.9025 -2.3872 32 1 2.8825 -4.5624 -3.9642 33 1 1.5578 -5.7164 -3.4742 34 1 2.6730 -4.2298 -6.6200 35 1 1.2554 -5.1570 -7.2166 36 1 2.7952 -2.2497 -9.7175 37 1 -0.3862 -2.1330 -5.5204 38 1 1.0961 -1.1793 -5.8420 39 1 -0.3891 -3.2550 1.5207 40 1 0.6182 -1.9048 2.2716 41 1 2.7385 -3.1945 1.7453 42 1 1.7309 -4.5445 0.9944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608178442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:37 Heat of formation + Delta-G solvation = -20.561320 kcal Electronic energy + Delta-G solvation = -22163.264522 eV Core-core repulsion = 18917.443096 eV Total energy + Delta-G solvation = -3245.821426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48543 -40.86735 -38.56538 -37.15172 -35.65238 -33.96257 -33.19862 -29.66020 -27.68942 -26.93893 -25.94624 -23.43893 -22.85441 -22.11632 -21.53039 -20.89978 -20.22801 -19.04811 -17.88352 -17.62681 -16.88063 -16.58390 -16.47794 -15.81880 -15.43072 -15.30103 -15.02095 -14.67399 -14.53539 -13.83817 -13.70868 -13.45868 -13.14215 -12.96410 -12.87437 -12.71149 -12.59120 -12.31283 -12.26425 -12.13657 -12.02090 -11.95719 -11.57728 -11.54287 -11.43130 -11.20136 -10.71020 -10.43027 -10.01180 -9.86018 -8.90704 -8.06663 -6.13724 1.18231 1.38094 1.42833 1.52131 2.12120 2.44038 2.72145 3.20828 3.46630 3.64691 3.71734 3.74705 3.86792 4.00735 4.10238 4.19914 4.42373 4.51867 4.59314 4.62969 4.66958 4.71742 4.81533 4.90334 4.92831 5.00467 5.03036 5.05396 5.09289 5.15008 5.20108 5.28751 5.32679 5.45043 5.55150 5.63777 5.66955 5.68249 5.82999 6.46305 6.67133 6.77410 6.94044 6.99328 7.51990 9.00839 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.004675 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.666555 B = 5987.959470 C = 7098.117848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.486 4.486 8 H 0.048 0.952 9 C 0.026 3.974 10 C 0.122 3.878 11 N -0.668 5.668 12 C 0.071 3.929 13 H 0.080 0.920 14 C -0.086 4.086 15 C -0.134 4.134 16 H 0.113 0.887 17 C -0.074 4.074 18 C -0.080 4.080 19 H 0.142 0.858 20 C 0.489 3.511 21 O -0.555 6.555 22 O -0.506 6.506 23 C -0.103 4.103 24 C -0.159 4.159 25 H 0.080 0.920 26 C -0.173 4.173 27 C -0.185 4.185 28 H 0.257 0.743 29 H 0.052 0.948 30 H 0.001 0.999 31 H 0.339 0.661 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.425 0.575 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.192 -10.495 -16.774 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.169 4.169 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.525 4.525 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.008 4.008 11 N -0.299 5.299 12 C -0.039 4.039 13 H 0.098 0.902 14 C -0.124 4.124 15 C -0.153 4.153 16 H 0.131 0.869 17 C -0.112 4.112 18 C -0.099 4.099 19 H 0.159 0.841 20 C 0.333 3.667 21 O -0.446 6.446 22 O -0.320 6.320 23 C -0.140 4.140 24 C -0.178 4.178 25 H 0.098 0.902 26 C -0.212 4.212 27 C -0.223 4.223 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.158 0.842 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.287 0.713 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.305 -10.811 -16.231 19.505 hybrid contribution 0.007 2.568 -0.191 2.576 sum 0.312 -8.243 -16.422 18.378 Atomic orbital electron populations 1.70085 1.06824 1.26833 1.50829 1.25514 0.95342 1.01174 0.94912 0.85819 0.79419 0.81033 0.77254 1.19506 1.21092 1.21066 1.20564 0.93037 0.90059 1.48809 0.93428 1.18987 0.97637 0.93759 0.87121 1.21166 0.92269 0.96318 0.91027 1.60533 1.46871 1.18977 1.03476 1.23189 0.96880 0.96591 0.87208 0.90201 1.22657 0.98727 0.97244 0.93797 1.23245 1.01477 0.97349 0.93215 0.86914 1.21679 0.99770 0.94602 0.95141 1.22605 0.98918 0.95267 0.93099 0.84058 1.23672 0.78574 0.84009 0.80471 1.90730 1.55495 1.23181 1.75210 1.84500 1.64312 1.52249 1.30898 1.21561 1.01271 0.98662 0.92520 1.23417 1.00199 0.97722 0.96463 0.90204 1.22484 0.94462 1.01551 1.02656 1.22962 0.96273 0.96527 1.06491 0.93402 0.92989 0.98077 0.84202 0.89901 0.91051 0.91560 0.87787 0.71316 0.90022 0.92444 0.90933 0.92679 0.91036 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.56 13.12 21.45 0.28 -51.28 16 2 C 0.03 1.67 5.40 84.66 0.46 2.12 16 3 Si 0.94 44.22 29.55 68.60 2.03 46.25 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 7 C -0.49 -26.38 7.48 25.60 0.19 -26.18 16 8 H 0.05 2.66 7.83 -2.91 -0.02 2.63 16 9 C 0.03 1.25 1.70 -52.93 -0.09 1.16 16 10 C 0.12 5.41 5.64 86.30 0.49 5.90 16 11 N -0.67 -27.20 6.37 -536.30 -3.42 -30.62 16 12 C 0.07 2.22 4.06 36.63 0.15 2.37 16 13 H 0.08 2.43 7.37 -2.39 -0.02 2.42 16 14 C -0.09 -2.14 7.93 21.44 0.17 -1.97 16 15 C -0.13 -2.69 4.23 -18.76 -0.08 -2.77 16 16 H 0.11 2.00 7.60 -2.39 -0.02 1.98 16 17 C -0.07 -1.22 6.13 31.27 0.19 -1.02 16 18 C -0.08 -1.47 3.50 -9.46 -0.03 -1.51 16 19 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 20 C 0.49 10.50 7.57 71.24 0.54 11.04 16 21 O -0.56 -16.91 16.06 21.98 0.35 -16.56 16 22 O -0.51 -7.33 13.40 -51.44 -0.69 -8.02 16 23 C -0.10 -2.62 6.19 30.79 0.19 -2.43 16 24 C -0.16 -4.41 3.74 -20.12 -0.08 -4.48 16 25 H 0.08 2.50 7.42 -2.39 -0.02 2.48 16 26 C -0.17 -8.20 9.69 30.59 0.30 -7.91 16 27 C -0.19 -8.07 9.88 30.59 0.30 -7.77 16 28 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 29 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.34 15.65 7.58 -89.69 -0.68 14.97 16 32 H 0.08 2.20 7.54 -2.39 -0.02 2.18 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.07 1.20 7.95 -2.39 -0.02 1.18 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.43 2.89 9.10 -74.06 -0.67 2.21 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.81 6.57 -2.38 -0.02 1.79 16 39 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.05 2.81 8.14 -2.38 -0.02 2.79 16 41 H 0.07 3.12 8.14 -2.38 -0.02 3.10 16 42 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 Total: -1.00 -65.49 341.38 0.93 -64.57 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.33 Total: 29.11 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.70 Total: -33.44 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.14 Total: -81.90 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.34 Total: -24.58 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -65.49 0.93 -64.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608178442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.005 kcal (2) G-P(sol) polarization free energy of solvation -65.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds