Wall clock time and date at job start Tue Mar 31 2020 01:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46721 * 2 1 4 4 N 1.46491 * 109.47308 * 119.99937 * 2 1 3 5 5 C 1.46497 * 119.99904 * 117.62884 * 4 2 1 6 6 C 1.50703 * 109.47074 * 269.99630 * 5 4 2 7 7 H 1.08000 * 120.00044 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00133 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99936 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47108 * 90.00595 * 10 8 6 12 12 H 1.48507 * 109.47314 * 210.00490 * 10 8 6 13 13 H 1.48506 * 109.47095 * 330.00534 * 10 8 6 14 14 C 1.34784 * 120.00092 * 297.62989 * 4 2 1 15 15 O 1.21280 * 119.99886 * 4.82827 * 14 4 2 16 16 C 1.50703 * 119.99682 * 184.83214 * 14 4 2 17 17 H 1.08998 * 110.36766 * 301.70217 * 16 14 4 18 18 C 1.54607 * 110.41512 * 64.06441 * 16 14 4 19 19 C 1.55980 * 104.46294 * 118.55980 * 18 16 14 20 20 H 1.09005 * 116.07488 * 161.71339 * 19 18 16 21 21 C 1.55963 * 104.30933 * 290.79573 * 19 18 16 22 22 C 1.52167 * 104.96764 * 70.32703 * 21 19 18 23 23 O 1.20760 * 127.32856 * 179.73348 * 22 21 19 24 24 C 1.53759 * 105.22292 * 359.78052 * 22 21 19 25 25 H 1.08996 * 116.43874 * 160.60346 * 24 22 21 26 26 C 1.56934 * 100.89480 * 33.96536 * 24 22 21 27 27 H 1.08997 * 109.47209 * 297.58075 * 1 2 3 28 28 H 1.09002 * 109.47093 * 57.58189 * 1 2 3 29 29 H 1.08997 * 109.46803 * 177.57654 * 1 2 3 30 30 H 1.09001 * 109.47017 * 240.00498 * 2 1 3 31 31 H 1.09007 * 109.47007 * 184.03031 * 3 2 1 32 32 H 1.09002 * 109.47391 * 304.02666 * 3 2 1 33 33 H 1.09001 * 109.47133 * 64.02955 * 3 2 1 34 34 H 1.08990 * 109.47248 * 30.00191 * 5 4 2 35 35 H 1.09008 * 109.47288 * 150.00113 * 5 4 2 36 36 H 0.96999 * 120.00003 * 179.97438 * 9 8 6 37 37 H 1.09000 * 110.43452 * 359.81619 * 18 16 14 38 38 H 1.08997 * 110.53939 * 237.35922 * 18 16 14 39 39 H 1.08998 * 110.35763 * 189.23097 * 21 19 18 40 40 H 1.09006 * 110.35502 * 311.42292 * 21 19 18 41 41 H 1.08990 * 112.09168 * 189.96876 * 26 24 22 42 42 H 1.09006 * 112.08248 * 63.28889 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.8172 -1.9112 1.0623 6 6 1.9044 -3.1102 1.0505 7 1 0.8359 -2.9763 1.1338 8 6 2.4331 -4.3781 0.9321 9 7 3.7341 -4.5412 0.8301 10 14 1.3015 -5.8642 0.9168 11 1 0.9036 -6.1690 -0.4811 12 1 2.0116 -7.0332 1.4953 13 1 0.0896 -5.5721 1.7239 14 6 1.7327 -0.2029 2.4197 15 8 0.9993 0.7563 2.5341 16 6 2.3246 -0.8494 3.6455 17 1 2.0403 -1.9006 3.6948 18 6 3.8640 -0.7067 3.6405 19 6 4.1826 0.1222 4.9229 20 1 5.2121 0.0781 5.2784 21 6 3.6245 1.5448 4.6109 22 6 2.1113 1.3851 4.6249 23 8 1.2827 2.2427 4.4348 24 6 1.8650 -0.1009 4.9339 25 1 0.8745 -0.3612 5.3070 26 6 3.0681 -0.4076 5.8937 27 1 -0.3633 0.4758 0.9108 28 1 -0.3633 0.5509 -0.8675 29 1 -0.3633 -1.0267 -0.0435 30 1 1.8933 -0.5138 -0.8900 31 1 3.1276 1.4435 -0.0722 32 1 1.6188 1.9768 -0.8517 33 1 1.7367 1.9351 0.9239 34 1 3.3822 -1.8754 0.1309 35 1 3.5070 -1.9881 1.9029 36 1 4.1060 -5.4332 0.7472 37 1 4.1937 -0.1716 2.7499 38 1 4.3391 -1.6863 3.6927 39 1 3.9384 2.2520 5.3787 40 1 3.9618 1.8774 3.6292 41 1 3.1715 -1.4741 6.0934 42 1 3.0163 0.1736 6.8144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570605708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:45 Heat of formation + Delta-G solvation = -69.401264 kcal Electronic energy + Delta-G solvation = -23779.704689 eV Core-core repulsion = 20531.765405 eV Total energy + Delta-G solvation = -3247.939285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -41.01051 -38.66201 -36.95720 -35.30473 -33.23828 -31.77321 -29.70214 -28.54235 -27.11722 -26.74947 -26.57719 -23.27034 -22.24135 -20.89209 -20.05584 -18.81617 -17.56620 -16.72424 -16.38194 -15.90550 -15.56890 -14.87355 -14.78898 -14.37346 -13.86836 -13.61578 -13.26038 -13.11302 -12.73327 -12.54754 -12.28526 -12.16286 -11.95355 -11.65447 -11.51319 -11.42786 -11.27690 -11.09501 -10.94489 -10.87203 -10.82318 -10.64274 -10.58722 -10.35859 -10.21210 -10.05197 -9.68319 -8.85568 -8.68964 -8.54064 -7.67582 -6.20931 -4.27718 2.52957 3.20165 3.27675 3.30188 3.40641 3.87621 4.29991 4.39533 4.54420 4.66862 4.87482 5.11638 5.22036 5.24618 5.37179 5.42046 5.54376 5.59793 5.72368 5.80337 5.83559 5.86355 5.88846 6.03851 6.09118 6.13226 6.15319 6.23578 6.31206 6.35524 6.41738 6.49235 6.49834 6.77497 6.82074 6.90786 7.18511 7.61368 7.75284 8.04687 8.08721 8.38274 8.78550 9.04804 9.40326 10.85370 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.007283 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.795823 B = 3843.470626 C = 4734.313978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.149 3.851 3 C -0.167 4.167 4 N -0.589 5.589 5 C 0.229 3.771 6 C -0.536 4.536 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.513 3.487 15 O -0.551 6.551 16 C -0.100 4.100 17 H 0.118 0.882 18 C -0.109 4.109 19 C -0.098 4.098 20 H 0.110 0.890 21 C -0.180 4.180 22 C 0.380 3.620 23 O -0.426 6.426 24 C -0.135 4.135 25 H 0.111 0.889 26 C -0.119 4.119 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 6.826 6.153 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.046 3.954 3 C -0.225 4.225 4 N -0.319 5.319 5 C 0.109 3.891 6 C -0.574 4.574 7 H 0.078 0.922 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.301 3.699 15 O -0.432 6.432 16 C -0.121 4.121 17 H 0.136 0.864 18 C -0.147 4.147 19 C -0.116 4.116 20 H 0.128 0.872 21 C -0.218 4.218 22 C 0.253 3.747 23 O -0.296 6.296 24 C -0.155 4.155 25 H 0.129 0.871 26 C -0.157 4.157 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.995 7.635 6.029 9.931 hybrid contribution -0.470 -1.314 -0.370 1.444 sum 1.525 6.321 5.659 8.620 Atomic orbital electron populations 1.22159 0.95767 1.01926 1.02372 1.20803 0.94255 0.92162 0.88223 1.22202 1.00238 0.97030 1.03054 1.48251 1.52406 1.27169 1.04118 1.19633 0.90834 0.79837 0.98767 1.21523 0.93881 0.90773 1.51266 0.92178 1.24921 0.95087 0.98922 0.94816 1.69914 1.10547 1.23079 1.49443 0.86556 0.80795 0.82083 0.78424 1.20564 1.21050 1.19797 1.20385 0.81092 0.83508 0.84885 1.90675 1.37660 1.28586 1.86295 1.22275 0.96365 1.02179 0.91274 0.86417 1.22718 0.93427 1.01328 0.97197 1.23591 0.98501 0.93460 0.96063 0.87238 1.23192 0.96261 0.98746 1.03609 1.25026 0.90141 0.89338 0.70193 1.90345 1.53764 1.49402 1.36082 1.24072 0.99829 0.95827 0.95753 0.87125 1.23532 0.93645 1.01877 0.96625 0.90708 0.93217 0.92592 0.90094 0.93414 0.92664 0.90586 0.95004 0.93271 0.92566 0.91109 0.89556 0.89185 0.89113 0.89708 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.19 37.16 0.34 -2.70 16 2 C 0.15 2.83 3.28 -67.93 -0.22 2.61 16 3 C -0.17 -2.85 9.14 37.16 0.34 -2.51 16 4 N -0.59 -12.10 2.40 -167.47 -0.40 -12.51 16 5 C 0.23 5.21 4.74 -5.19 -0.02 5.18 16 6 C -0.54 -13.56 9.39 -34.44 -0.32 -13.89 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -23.71 13.29 55.43 0.74 -22.98 16 10 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 C 0.51 10.34 5.83 -10.98 -0.06 10.28 16 15 O -0.55 -12.12 9.31 -17.31 -0.16 -12.28 16 16 C -0.10 -1.72 2.19 -89.36 -0.20 -1.92 16 17 H 0.12 2.19 8.02 -51.93 -0.42 1.77 16 18 C -0.11 -1.62 3.97 -24.29 -0.10 -1.72 16 19 C -0.10 -1.14 5.24 -85.27 -0.45 -1.59 16 20 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 21 C -0.18 -2.37 6.09 -25.57 -0.16 -2.53 16 22 C 0.38 6.43 5.25 -26.76 -0.14 6.28 16 23 O -0.43 -8.82 16.46 -16.87 -0.28 -9.10 16 24 C -0.14 -2.07 4.66 -86.53 -0.40 -2.47 16 25 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 26 C -0.12 -1.38 6.45 -22.42 -0.14 -1.52 16 27 H 0.07 1.53 6.12 -51.93 -0.32 1.21 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.52 7.78 -51.93 -0.40 1.12 16 31 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.47 6.06 -51.93 -0.31 1.15 16 34 H 0.03 0.78 7.90 -51.93 -0.41 0.36 16 35 H 0.05 1.10 4.63 -51.92 -0.24 0.86 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.07 1.12 7.16 -51.93 -0.37 0.75 16 38 H 0.09 1.30 7.69 -51.93 -0.40 0.90 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.25 7.84 -51.93 -0.41 0.84 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 325.80 15.07 4.91 4.91 Total: -1.00 -29.36 325.80 -8.48 -37.84 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.63 Total: 3.81 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.63 Total: -4.91 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.33 Total: -35.48 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.44 Total: -21.38 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.36 -8.48 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570605708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.562 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds