Wall clock time and date at job start Tue Mar 31 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46721 * 2 1 4 4 N 1.46491 * 109.47308 * 119.99937 * 2 1 3 5 5 C 1.46497 * 119.99904 * 117.62884 * 4 2 1 6 6 C 1.50703 * 109.47074 * 269.99630 * 5 4 2 7 7 H 1.08000 * 120.00044 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00133 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99936 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00113 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47108 * 90.00595 * 10 8 6 12 12 H 1.48507 * 109.47314 * 210.00490 * 10 8 6 13 13 H 1.48506 * 109.47095 * 330.00534 * 10 8 6 14 14 C 1.34784 * 120.00092 * 297.62989 * 4 2 1 15 15 O 1.21280 * 119.99886 * 4.82827 * 14 4 2 16 16 C 1.50703 * 119.99682 * 184.83214 * 14 4 2 17 17 H 1.08998 * 110.36766 * 301.70217 * 16 14 4 18 18 C 1.54607 * 110.41512 * 64.06441 * 16 14 4 19 19 C 1.55980 * 104.46294 * 118.55980 * 18 16 14 20 20 H 1.09005 * 116.07488 * 161.71339 * 19 18 16 21 21 C 1.55963 * 104.30933 * 290.79573 * 19 18 16 22 22 C 1.52167 * 104.96764 * 70.32703 * 21 19 18 23 23 O 1.20760 * 127.32856 * 179.73348 * 22 21 19 24 24 C 1.53759 * 105.22292 * 359.78052 * 22 21 19 25 25 H 1.08996 * 116.43874 * 160.60346 * 24 22 21 26 26 C 1.56934 * 100.89480 * 33.96536 * 24 22 21 27 27 H 1.08997 * 109.47209 * 297.58075 * 1 2 3 28 28 H 1.09002 * 109.47093 * 57.58189 * 1 2 3 29 29 H 1.08997 * 109.46803 * 177.57654 * 1 2 3 30 30 H 1.09001 * 109.47017 * 240.00498 * 2 1 3 31 31 H 1.09007 * 109.47007 * 184.03031 * 3 2 1 32 32 H 1.09002 * 109.47391 * 304.02666 * 3 2 1 33 33 H 1.09001 * 109.47133 * 64.02955 * 3 2 1 34 34 H 1.08990 * 109.47248 * 30.00191 * 5 4 2 35 35 H 1.09008 * 109.47288 * 150.00113 * 5 4 2 36 36 H 0.96999 * 120.00003 * 179.97438 * 9 8 6 37 37 H 1.09000 * 110.43452 * 359.81619 * 18 16 14 38 38 H 1.08997 * 110.53939 * 237.35922 * 18 16 14 39 39 H 1.08998 * 110.35763 * 189.23097 * 21 19 18 40 40 H 1.09006 * 110.35502 * 311.42292 * 21 19 18 41 41 H 1.08990 * 112.09168 * 189.96876 * 26 24 22 42 42 H 1.09006 * 112.08248 * 63.28889 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.8172 -1.9112 1.0623 6 6 1.9044 -3.1102 1.0505 7 1 0.8359 -2.9763 1.1338 8 6 2.4331 -4.3781 0.9321 9 7 3.7341 -4.5412 0.8301 10 14 1.3015 -5.8642 0.9168 11 1 0.9036 -6.1690 -0.4811 12 1 2.0116 -7.0332 1.4953 13 1 0.0896 -5.5721 1.7239 14 6 1.7327 -0.2029 2.4197 15 8 0.9993 0.7563 2.5341 16 6 2.3246 -0.8494 3.6455 17 1 2.0403 -1.9006 3.6948 18 6 3.8640 -0.7067 3.6405 19 6 4.1826 0.1222 4.9229 20 1 5.2121 0.0781 5.2784 21 6 3.6245 1.5448 4.6109 22 6 2.1113 1.3851 4.6249 23 8 1.2827 2.2427 4.4348 24 6 1.8650 -0.1009 4.9339 25 1 0.8745 -0.3612 5.3070 26 6 3.0681 -0.4076 5.8937 27 1 -0.3633 0.4758 0.9108 28 1 -0.3633 0.5509 -0.8675 29 1 -0.3633 -1.0267 -0.0435 30 1 1.8933 -0.5138 -0.8900 31 1 3.1276 1.4435 -0.0722 32 1 1.6188 1.9768 -0.8517 33 1 1.7367 1.9351 0.9239 34 1 3.3822 -1.8754 0.1309 35 1 3.5070 -1.9881 1.9029 36 1 4.1060 -5.4332 0.7472 37 1 4.1937 -0.1716 2.7499 38 1 4.3391 -1.6863 3.6927 39 1 3.9384 2.2520 5.3787 40 1 3.9618 1.8774 3.6292 41 1 3.1715 -1.4741 6.0934 42 1 3.0163 0.1736 6.8144 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570605708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:44 Heat of formation + Delta-G solvation = -84.110965 kcal Electronic energy + Delta-G solvation = -23780.342550 eV Core-core repulsion = 20531.765405 eV Total energy + Delta-G solvation = -3248.577145 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.33337 -40.16745 -38.30947 -36.97794 -35.05877 -33.45247 -30.98844 -29.73743 -28.89332 -28.06917 -27.96164 -25.01826 -23.79149 -22.30089 -21.11246 -20.18947 -19.01748 -18.64808 -17.63042 -17.55761 -16.99987 -16.40925 -16.19255 -16.10796 -15.39784 -14.95389 -14.60577 -14.55320 -14.34372 -14.06867 -13.76673 -13.56809 -13.47094 -13.22684 -12.99064 -12.82264 -12.72187 -12.64590 -12.43760 -12.29629 -12.16764 -12.11996 -11.96604 -11.81933 -11.69411 -11.49203 -11.35526 -10.59020 -10.25193 -10.10844 -9.39694 -8.18877 -6.32079 1.22775 1.39109 1.42484 1.50661 1.79958 2.30394 2.44470 3.10569 3.20163 3.45778 3.50896 3.70993 3.84939 4.06488 4.11383 4.21207 4.23446 4.32136 4.36326 4.43181 4.62177 4.70327 4.73223 4.78581 4.85158 4.89246 4.92541 4.95079 5.05791 5.07666 5.14075 5.18459 5.22682 5.26962 5.29368 5.34103 5.37975 5.70103 5.97371 6.10149 6.61551 6.80623 6.86981 7.34293 7.46804 8.85839 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.007283 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.795823 B = 3843.470626 C = 4734.313978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 C -0.153 4.153 4 N -0.594 5.594 5 C 0.244 3.756 6 C -0.545 4.545 7 H 0.044 0.956 8 C 0.028 3.972 9 N -0.913 5.913 10 Si 0.948 3.052 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.570 6.570 16 C -0.102 4.102 17 H 0.100 0.900 18 C -0.109 4.109 19 C -0.075 4.075 20 H 0.151 0.849 21 C -0.176 4.176 22 C 0.371 3.629 23 O -0.475 6.475 24 C -0.145 4.145 25 H 0.102 0.898 26 C -0.105 4.105 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.014 0.986 35 H 0.054 0.946 36 H 0.268 0.732 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.981 6.683 7.167 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 C -0.211 4.211 4 N -0.324 5.324 5 C 0.123 3.877 6 C -0.584 4.584 7 H 0.062 0.938 8 C -0.173 4.173 9 N -0.552 5.552 10 Si 0.774 3.226 11 H -0.204 1.204 12 H -0.202 1.202 13 H -0.201 1.201 14 C 0.295 3.705 15 O -0.452 6.452 16 C -0.123 4.123 17 H 0.118 0.882 18 C -0.146 4.146 19 C -0.093 4.093 20 H 0.168 0.832 21 C -0.213 4.213 22 C 0.247 3.753 23 O -0.349 6.349 24 C -0.165 4.165 25 H 0.120 0.880 26 C -0.142 4.142 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.324 7.484 7.046 10.803 hybrid contribution -0.933 -1.262 -0.739 1.735 sum 2.391 6.222 6.306 9.176 Atomic orbital electron populations 1.22053 0.95575 1.01011 1.02564 1.21019 0.94481 0.93258 0.87766 1.22063 1.00702 0.95495 1.02866 1.48273 1.52368 1.26706 1.05035 1.19334 0.90490 0.79969 0.97900 1.21653 0.93375 0.92047 1.51333 0.93810 1.25514 0.96242 1.01029 0.94520 1.69977 1.11579 1.23759 1.49928 0.85708 0.79113 0.79492 0.78256 1.20433 1.20165 1.20082 1.20932 0.80723 0.83291 0.85517 1.90677 1.38421 1.29511 1.86630 1.22296 0.98287 1.00921 0.90817 0.88160 1.22708 0.91224 1.01896 0.98803 1.23680 1.00482 0.91222 0.93931 0.83181 1.23212 0.93095 1.00634 1.04362 1.25709 0.91849 0.89347 0.68384 1.90317 1.55537 1.50768 1.38268 1.24175 1.01328 0.94927 0.96064 0.88022 1.23563 0.90827 1.03202 0.96589 0.92902 0.90269 0.94219 0.90022 0.92721 0.90091 0.92965 0.96788 0.92784 0.92286 0.92398 0.89627 0.86025 0.89798 0.88462 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 9.19 71.98 0.66 -5.13 16 2 C 0.14 5.28 3.28 44.99 0.15 5.43 16 3 C -0.15 -5.17 9.14 71.98 0.66 -4.51 16 4 N -0.59 -24.97 2.40 -802.14 -1.93 -26.90 16 5 C 0.24 11.29 4.74 85.63 0.41 11.69 16 6 C -0.55 -28.04 9.39 25.60 0.24 -27.80 16 7 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 8 C 0.03 1.43 5.46 84.65 0.46 1.89 16 9 N -0.91 -48.33 13.29 21.45 0.28 -48.05 16 10 Si 0.95 41.36 29.54 68.60 2.03 43.38 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 14 C 0.51 20.94 5.83 87.66 0.51 21.45 16 15 O -0.57 -25.94 9.31 18.83 0.18 -25.77 16 16 C -0.10 -3.54 2.19 -9.98 -0.02 -3.56 16 17 H 0.10 3.82 8.02 -2.39 -0.02 3.80 16 18 C -0.11 -3.09 3.97 32.17 0.13 -2.96 16 19 C -0.08 -1.49 5.24 -7.32 -0.04 -1.53 16 20 H 0.15 1.92 8.14 -2.38 -0.02 1.90 16 21 C -0.18 -4.18 6.09 31.35 0.19 -3.99 16 22 C 0.37 12.37 5.25 30.57 0.16 12.53 16 23 O -0.47 -20.13 16.46 20.41 0.34 -19.79 16 24 C -0.15 -4.37 4.66 -8.14 -0.04 -4.41 16 25 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 26 C -0.10 -2.08 6.45 33.38 0.22 -1.86 16 27 H 0.05 2.22 6.12 -2.39 -0.01 2.20 16 28 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 3.08 7.78 -2.39 -0.02 3.07 16 31 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.05 2.03 6.06 -2.39 -0.01 2.01 16 34 H 0.01 0.70 7.90 -2.39 -0.02 0.68 16 35 H 0.05 2.45 4.63 -2.38 -0.01 2.44 16 36 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 37 H 0.06 1.80 7.16 -2.39 -0.02 1.78 16 38 H 0.09 2.46 7.69 -2.39 -0.02 2.44 16 39 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.08 2.18 7.84 -2.38 -0.02 2.16 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -65.05 325.80 5.58 -59.47 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 1.00 Total: 20.40 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 3.68 Total: -2.75 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.64 Total: -74.95 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: 0.51 Total: -45.56 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -65.05 5.58 -59.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570605708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.643 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds