Wall clock time and date at job start Tue Mar 31 2020 01:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.09002 * 109.47173 * 55.13397 * 3 2 1 5 5 C 1.50697 * 109.47211 * 175.13554 * 3 2 1 6 6 H 1.08005 * 119.99770 * 119.99836 * 5 3 2 7 7 C 1.37873 * 120.00120 * 300.00018 * 5 3 2 8 8 N 1.31516 * 119.99824 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00151 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47122 * 60.00013 * 9 7 5 11 11 H 1.48498 * 109.47301 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47327 * 300.00454 * 9 7 5 13 13 N 1.46897 * 109.47386 * 295.13740 * 3 2 1 14 14 C 1.46897 * 111.00385 * 154.14789 * 13 3 2 15 15 C 1.53001 * 109.47278 * 184.77890 * 14 13 3 16 16 H 1.09000 * 109.47291 * 60.00042 * 15 14 13 17 17 O 1.42902 * 109.47081 * 299.99749 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.97438 * 15 14 13 19 19 O 1.42899 * 109.47249 * 184.99908 * 18 15 14 20 20 C 1.35908 * 116.99927 * 180.02562 * 19 18 15 21 21 C 1.38728 * 120.05624 * 359.72255 * 20 19 18 22 22 C 1.38151 * 119.94059 * 179.74533 * 21 20 19 23 23 C 1.38265 * 120.05671 * 0.50852 * 22 21 20 24 24 C 1.38274 * 120.10890 * 359.76802 * 23 22 21 25 25 C 1.38136 * 120.05836 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.47142 * 185.11236 * 1 2 3 27 27 H 1.08998 * 109.47026 * 305.10966 * 1 2 3 28 28 H 1.08993 * 109.47083 * 65.10969 * 1 2 3 29 29 H 1.08996 * 109.46923 * 240.00347 * 2 1 3 30 30 H 1.09000 * 109.47013 * 119.99952 * 2 1 3 31 31 H 0.96999 * 119.99788 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00340 * 278.10592 * 13 3 2 33 33 H 1.09000 * 109.47268 * 64.77287 * 14 13 3 34 34 H 1.09006 * 109.47047 * 304.77344 * 14 13 3 35 35 H 0.96697 * 113.99832 * 300.00291 * 17 15 14 36 36 H 1.09000 * 109.47252 * 304.99924 * 18 15 14 37 37 H 1.09004 * 109.47110 * 64.99777 * 18 15 14 38 38 H 1.07998 * 120.02548 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.96787 * 180.28137 * 22 21 20 40 40 H 1.07994 * 119.94449 * 179.75006 * 23 22 21 41 41 H 1.07997 * 119.96782 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.03147 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6073 1.9809 0.8432 5 6 3.5422 1.4442 0.1205 6 1 4.1457 1.8894 -0.6567 7 6 4.1460 0.8775 1.2228 8 7 3.4111 0.3349 2.1689 9 14 6.0081 0.8790 1.3718 10 1 6.5035 2.2789 1.3714 11 1 6.4038 0.2137 2.6390 12 1 6.5972 0.1452 0.2230 13 7 1.6486 2.1003 -1.2538 14 6 1.5505 3.5553 -1.0767 15 6 1.0272 4.1918 -2.3658 16 1 0.0421 3.7868 -2.5972 17 8 1.9255 3.9021 -3.4388 18 6 0.9245 5.7071 -2.1811 19 8 0.3273 6.2891 -3.3416 20 6 0.1626 7.6381 -3.3402 21 6 0.5622 8.3857 -2.2420 22 6 0.3985 9.7574 -2.2452 23 6 -0.1726 10.3842 -3.3373 24 6 -0.5769 9.6406 -4.4307 25 6 -0.4105 8.2693 -4.4347 26 1 -0.3633 -1.0235 0.0916 27 1 -0.3633 0.5910 0.8407 28 1 -0.3633 0.4325 -0.9322 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8359 -0.0635 2.9446 32 1 2.2887 1.8691 -1.9987 33 1 2.5356 3.9604 -0.8452 34 1 0.8653 3.7763 -0.2583 35 1 2.8232 4.2339 -3.3007 36 1 0.3100 5.9259 -1.3079 37 1 1.9213 6.1241 -2.0376 38 1 1.0042 7.8960 -1.3868 39 1 0.7136 10.3403 -1.3923 40 1 -0.3034 11.4562 -3.3362 41 1 -1.0231 10.1324 -5.2824 42 1 -0.7269 7.6889 -5.2888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579729021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:54 Heat of formation + Delta-G solvation = -75.144045 kcal Electronic energy + Delta-G solvation = -21330.972580 eV Core-core repulsion = 18082.784270 eV Total energy + Delta-G solvation = -3248.188310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23512 -38.15763 -36.92205 -35.55128 -32.51277 -31.43925 -31.14613 -30.37141 -29.16901 -26.65649 -24.61530 -22.95335 -22.53350 -21.83892 -21.14216 -19.48262 -18.32975 -16.94082 -16.69020 -16.37559 -16.04318 -15.34479 -14.92088 -14.75135 -14.61235 -13.98062 -13.78190 -13.57830 -13.28412 -12.98823 -12.66292 -12.63382 -12.03542 -11.83797 -11.73563 -11.31375 -11.19914 -11.13177 -11.06762 -10.92812 -10.68361 -10.56393 -10.22194 -10.03020 -9.61722 -9.40935 -9.19049 -9.11003 -8.42562 -8.33574 -7.31824 -6.04538 -4.18279 1.15531 1.28841 3.04838 3.23929 3.29876 3.31895 3.62340 4.34602 4.53927 4.60907 4.68920 4.82343 4.93727 5.04585 5.13152 5.20038 5.21257 5.36631 5.39232 5.55866 5.60250 5.81934 5.84048 6.14257 6.17735 6.23352 6.34356 6.38787 6.44099 6.49791 6.61141 6.69980 7.09108 7.15997 7.32135 7.39784 7.54605 7.72951 7.83848 8.04765 8.09459 8.27284 8.61514 8.94523 9.49668 10.95442 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.003256 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.949633 B = 8598.488054 C = 9214.393488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.682 5.682 14 C 0.041 3.959 15 C 0.114 3.886 16 H 0.111 0.889 17 O -0.550 6.550 18 C 0.028 3.972 19 O -0.303 6.303 20 C 0.134 3.866 21 C -0.212 4.212 22 C -0.080 4.080 23 C -0.166 4.166 24 C -0.082 4.082 25 C -0.156 4.156 26 H 0.025 0.975 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.090 0.910 31 H 0.262 0.738 32 H 0.336 0.664 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.370 0.630 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 15.937 -8.463 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.313 5.313 14 C -0.089 4.089 15 C 0.054 3.946 16 H 0.129 0.871 17 O -0.354 6.354 18 C -0.048 4.048 19 O -0.216 6.216 20 C 0.088 3.912 21 C -0.231 4.231 22 C -0.099 4.099 23 C -0.184 4.184 24 C -0.100 4.100 25 C -0.174 4.174 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.216 0.784 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.146 0.854 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.486 15.280 -8.558 19.047 hybrid contribution 2.629 0.643 0.870 2.842 sum -4.857 15.923 -7.689 18.337 Atomic orbital electron populations 1.21691 0.98959 0.98373 1.00348 1.21498 0.92143 0.99124 1.01738 1.19168 0.92798 0.91313 0.85938 0.95136 1.21826 0.92727 1.38563 1.05642 0.92926 1.24936 0.97988 0.94901 0.95670 1.69867 1.34986 1.37955 1.09429 0.86705 0.85953 0.78159 0.77446 1.20448 1.21199 1.20208 1.60765 1.55754 1.04545 1.10221 1.22289 0.99519 0.92074 0.95066 1.22093 0.95401 0.88834 0.88269 0.87078 1.86626 1.23520 1.81426 1.43836 1.23717 0.97931 0.95961 0.87236 1.86165 1.76613 1.17468 1.41382 1.19150 0.94769 0.83032 0.94236 1.21343 1.07243 0.95307 0.99177 1.20964 0.96988 0.93811 0.98098 1.21041 1.02809 0.99947 0.94605 1.20960 0.98027 0.92890 0.98173 1.20484 1.04183 0.94572 0.98182 0.95599 0.94501 0.93437 0.94995 0.89141 0.92757 0.84700 0.94987 0.91063 0.78391 0.91037 0.91742 0.85389 0.85901 0.86100 0.85523 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.74 37.16 0.36 -2.44 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.19 1.98 -68.87 -0.14 5.06 16 4 H 0.03 0.81 7.71 -51.93 -0.40 0.41 16 5 C -0.55 -14.40 8.46 -34.44 -0.29 -14.69 16 6 H 0.05 1.36 7.73 -52.48 -0.41 0.96 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.57 11.29 55.43 0.63 -23.94 16 9 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.68 -13.87 5.76 -107.95 -0.62 -14.49 16 14 C 0.04 0.71 5.21 -3.83 -0.02 0.69 16 15 C 0.11 1.66 3.52 -26.73 -0.09 1.56 16 16 H 0.11 1.73 8.14 -51.93 -0.42 1.30 16 17 O -0.55 -8.38 12.73 -40.06 -0.51 -8.89 16 18 C 0.03 0.34 4.38 37.16 0.16 0.51 16 19 O -0.30 -4.22 10.10 -24.28 -0.25 -4.46 16 20 C 0.13 1.69 6.69 -39.22 -0.26 1.43 16 21 C -0.21 -2.38 9.04 -39.43 -0.36 -2.74 16 22 C -0.08 -0.78 10.04 -39.60 -0.40 -1.18 16 23 C -0.17 -1.50 10.04 -39.56 -0.40 -1.90 16 24 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 25 C -0.16 -1.74 9.99 -39.43 -0.39 -2.14 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.94 7.89 -51.93 -0.41 0.53 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 2.39 5.95 -51.93 -0.31 2.09 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.34 6.95 7.92 -39.29 -0.31 6.64 16 33 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 35 H 0.37 4.53 9.05 45.56 0.41 4.94 16 36 H 0.07 0.81 7.65 -51.93 -0.40 0.42 16 37 H 0.06 0.73 7.67 -51.93 -0.40 0.34 16 38 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -29.09 347.62 -8.90 -37.99 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.90 Total: 10.83 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.46 Total: -17.97 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.00 Total: -38.43 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.76 Total: -13.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.09 -8.90 -37.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579729021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.154 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds