Wall clock time and date at job start Tue Mar 31 2020 00:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99826 * 89.99904 * 5 4 3 7 7 H 1.08000 * 120.00069 * 353.18034 * 6 5 4 8 8 C 1.38811 * 119.99918 * 172.90767 * 6 5 4 9 9 N 1.31619 * 120.00245 * 41.73097 * 8 6 5 10 10 Si 1.86801 * 119.99988 * 221.73277 * 8 6 5 11 11 H 1.48504 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47408 * 119.99688 * 10 8 6 13 13 H 1.48502 * 109.47256 * 240.00096 * 10 8 6 14 14 C 1.46498 * 120.00101 * 270.00105 * 5 4 3 15 15 C 1.50698 * 109.46993 * 263.50100 * 14 5 4 16 16 C 1.38278 * 120.00753 * 261.79999 * 15 14 5 17 17 C 1.38208 * 120.15308 * 180.02562 * 16 15 14 18 18 C 1.38287 * 120.14555 * 359.97438 * 17 16 15 19 19 C 1.38528 * 119.99475 * 0.02562 * 18 17 16 20 20 O 1.36001 * 120.06800 * 179.97438 * 19 18 17 21 21 C 1.38529 * 119.99841 * 81.53245 * 15 14 5 22 22 O 1.35997 * 120.06855 * 359.97438 * 21 15 14 23 23 C 1.42897 * 116.99816 * 90.00437 * 22 21 15 24 24 H 1.09000 * 109.47223 * 60.00013 * 1 2 3 25 25 H 1.09005 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46971 * 299.99920 * 1 2 3 27 27 H 1.08996 * 109.46971 * 240.00080 * 2 1 3 28 28 H 1.09000 * 109.47223 * 119.99986 * 2 1 3 29 29 H 1.09004 * 109.46888 * 59.99868 * 3 2 1 30 30 H 1.09000 * 109.47014 * 300.00114 * 3 2 1 31 31 H 1.08999 * 109.46857 * 59.99556 * 4 3 2 32 32 H 1.09006 * 109.47050 * 300.00403 * 4 3 2 33 33 H 0.97005 * 120.00029 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47063 * 23.50439 * 14 5 4 35 35 H 1.09002 * 109.47129 * 143.50682 * 14 5 4 36 36 H 1.08001 * 119.92396 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.92981 * 180.02562 * 17 16 15 38 38 H 1.07991 * 120.00267 * 179.97438 * 18 17 16 39 39 H 0.96696 * 113.99877 * 90.00506 * 20 19 18 40 40 H 1.08998 * 109.47572 * 59.99724 * 23 22 21 41 41 H 1.09007 * 109.46869 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47582 * 299.99380 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2861 3.4699 1.1857 7 1 4.0029 3.0037 2.1178 8 6 4.8861 4.7216 1.1898 9 7 4.5368 5.6218 0.2955 10 14 6.1894 5.1284 2.4647 11 1 6.3995 3.9545 3.3497 12 1 7.4630 5.4669 1.7800 13 1 5.7415 6.2872 3.2782 14 6 4.3031 3.5135 -1.2690 15 6 5.7643 3.4108 -1.6229 16 6 6.6198 4.4596 -1.3398 17 6 7.9604 4.3689 -1.6635 18 6 8.4523 3.2285 -2.2717 19 6 7.6006 2.1741 -2.5581 20 8 8.0827 1.0520 -3.1566 21 6 6.2516 2.2634 -2.2270 22 8 5.4127 1.2285 -2.5007 23 6 4.7698 1.2348 -3.7769 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 4.9563 6.4964 0.2981 34 1 3.7055 3.0515 -2.0548 35 1 4.0259 4.5632 -1.1713 36 1 6.2394 5.3521 -0.8653 37 1 8.6254 5.1900 -1.4404 38 1 9.5000 3.1602 -2.5240 39 1 8.3898 0.3766 -2.5366 40 1 5.5238 1.2166 -4.5637 41 1 4.1308 0.3562 -3.8660 42 1 4.1646 2.1360 -3.8744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233257708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:10 Heat of formation + Delta-G solvation = -33.299973 kcal Electronic energy + Delta-G solvation = -23154.343344 eV Core-core repulsion = 19907.969528 eV Total energy + Delta-G solvation = -3246.373815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.74608 -37.04825 -36.61422 -35.71605 -34.05155 -31.40415 -30.45600 -28.85957 -27.85441 -26.54031 -25.39144 -23.79648 -21.77508 -21.48555 -20.65488 -19.83308 -17.75887 -16.97579 -16.73396 -15.79761 -15.24088 -14.90806 -14.79736 -14.57353 -13.87618 -13.70496 -13.61954 -13.44913 -13.31839 -12.74425 -12.25844 -11.98712 -11.87077 -11.58905 -11.39484 -11.25102 -11.10766 -10.79845 -10.76325 -10.56001 -10.48569 -10.34178 -10.29233 -9.90356 -9.82890 -9.70702 -9.15324 -8.47704 -7.89525 -7.80615 -6.90182 -5.89055 -3.05874 1.78200 1.96809 3.38555 3.50478 3.55489 4.01343 4.41129 4.53940 4.77322 5.14202 5.31728 5.40346 5.47135 5.60571 5.63997 5.67003 5.76797 5.79406 5.87357 6.00930 6.08140 6.16925 6.17566 6.30478 6.31351 6.39530 6.44155 6.53358 6.66027 6.69227 6.74283 6.94049 7.01104 7.14795 7.20829 7.37557 7.49177 7.72455 7.81713 7.84781 8.25187 8.36042 9.13202 9.85011 10.29801 11.07793 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.009096 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.122718 B = 3077.497451 C = 4948.961239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.145 3.855 5 N -0.580 5.580 6 C -0.246 4.246 7 H 0.079 0.921 8 C 0.009 3.991 9 N -0.872 5.872 10 Si 0.857 3.143 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.296 1.296 14 C 0.164 3.836 15 C -0.064 4.064 16 C -0.095 4.095 17 C -0.126 4.126 18 C -0.155 4.155 19 C 0.066 3.934 20 O -0.499 6.499 21 C 0.066 3.934 22 O -0.324 6.324 23 C 0.039 3.961 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.254 0.746 34 H 0.025 0.975 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.381 0.619 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.753 -6.962 -6.076 9.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.177 4.177 4 C 0.019 3.981 5 N -0.298 5.298 6 C -0.374 4.374 7 H 0.097 0.903 8 C -0.189 4.189 9 N -0.518 5.518 10 Si 0.686 3.314 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.223 1.223 14 C 0.038 3.962 15 C -0.068 4.068 16 C -0.113 4.113 17 C -0.144 4.144 18 C -0.174 4.174 19 C 0.022 3.978 20 O -0.308 6.308 21 C 0.021 3.979 22 O -0.241 6.241 23 C -0.055 4.055 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.236 0.764 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.571 -6.674 -6.474 9.316 hybrid contribution 1.135 0.046 1.000 1.513 sum 1.705 -6.628 -5.475 8.764 Atomic orbital electron populations 1.21765 0.96787 1.00516 1.01564 1.21493 0.94979 0.98360 1.01163 1.22238 0.99558 0.94384 1.01557 1.20953 0.90961 0.86265 0.99952 1.44074 1.74491 1.09144 1.02052 1.19203 1.32711 1.00066 0.85419 0.90315 1.24404 1.01565 0.95367 0.97518 1.70032 1.39983 1.03410 1.38377 0.86889 0.84986 0.77619 0.81945 1.20523 1.21058 1.22346 1.20497 0.87020 1.02997 0.85719 1.21314 1.01364 0.90465 0.93635 1.21837 0.91956 1.00683 0.96870 1.21099 0.96327 0.97352 0.99622 1.21099 0.99081 0.94721 1.02469 1.18768 0.91429 0.88357 0.99263 1.84752 1.83170 1.27134 1.35762 1.19042 0.88249 0.89421 1.01153 1.86006 1.59937 1.43675 1.34451 1.22866 0.96334 1.01778 0.84559 0.93123 0.93622 0.93013 0.92690 0.92647 0.92418 0.93093 0.92336 0.94151 0.93425 0.95670 0.85122 0.83221 0.86671 0.86441 0.76420 0.94131 0.89723 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.79 5.93 -26.73 -0.16 -1.95 16 3 C -0.14 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.15 3.00 5.64 -4.04 -0.02 2.98 16 5 N -0.58 -13.88 2.53 -174.61 -0.44 -14.32 16 6 C -0.25 -6.48 9.55 -15.06 -0.14 -6.62 16 7 H 0.08 2.09 8.06 -52.49 -0.42 1.67 16 8 C 0.01 0.23 3.66 -17.43 -0.06 0.17 16 9 N -0.87 -22.73 8.50 55.49 0.47 -22.26 16 10 Si 0.86 20.81 29.69 -169.99 -5.05 15.76 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 14 C 0.16 3.78 5.01 -5.20 -0.03 3.76 16 15 C -0.06 -1.41 5.31 -104.50 -0.55 -1.97 16 16 C -0.09 -2.06 8.66 -39.58 -0.34 -2.41 16 17 C -0.13 -2.39 10.04 -39.57 -0.40 -2.79 16 18 C -0.15 -2.76 9.98 -39.46 -0.39 -3.15 16 19 C 0.07 1.24 6.72 -39.12 -0.26 0.98 16 20 O -0.50 -8.12 13.29 -34.22 -0.45 -8.57 16 21 C 0.07 1.34 5.71 -39.12 -0.22 1.11 16 22 O -0.32 -6.13 7.42 -34.20 -0.25 -6.38 16 23 C 0.04 0.60 10.83 101.05 1.09 1.69 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.18 5.86 -51.93 -0.30 0.88 16 32 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.25 6.39 8.04 -40.82 -0.33 6.06 16 34 H 0.03 0.55 6.39 -51.93 -0.33 0.21 16 35 H 0.13 3.35 5.04 -51.93 -0.26 3.09 16 36 H 0.15 3.49 5.09 -52.49 -0.27 3.22 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.38 4.64 9.06 45.56 0.41 5.06 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.66 7.13 -51.93 -0.37 0.29 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -28.19 337.36 -7.65 -35.84 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.74 Total: 7.24 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.28 Total: -12.40 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.03 Total: -36.58 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.71 Total: -14.96 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.05 Total: 15.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.19 -7.65 -35.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233257708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.542 kcal (2) G-P(sol) polarization free energy of solvation -28.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds