Wall clock time and date at job start Tue Mar 31 2020 00:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.53000 * 109.47214 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99826 * 89.99904 * 5 4 3 7 7 H 1.08000 * 120.00069 * 353.18034 * 6 5 4 8 8 C 1.38811 * 119.99918 * 172.90767 * 6 5 4 9 9 N 1.31619 * 120.00245 * 41.73097 * 8 6 5 10 10 Si 1.86801 * 119.99988 * 221.73277 * 8 6 5 11 11 H 1.48504 * 109.46934 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47408 * 119.99688 * 10 8 6 13 13 H 1.48502 * 109.47256 * 240.00096 * 10 8 6 14 14 C 1.46498 * 120.00101 * 270.00105 * 5 4 3 15 15 C 1.50698 * 109.46993 * 263.50100 * 14 5 4 16 16 C 1.38278 * 120.00753 * 261.79999 * 15 14 5 17 17 C 1.38208 * 120.15308 * 180.02562 * 16 15 14 18 18 C 1.38287 * 120.14555 * 359.97438 * 17 16 15 19 19 C 1.38528 * 119.99475 * 0.02562 * 18 17 16 20 20 O 1.36001 * 120.06800 * 179.97438 * 19 18 17 21 21 C 1.38529 * 119.99841 * 81.53245 * 15 14 5 22 22 O 1.35997 * 120.06855 * 359.97438 * 21 15 14 23 23 C 1.42897 * 116.99816 * 90.00437 * 22 21 15 24 24 H 1.09000 * 109.47223 * 60.00013 * 1 2 3 25 25 H 1.09005 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46971 * 299.99920 * 1 2 3 27 27 H 1.08996 * 109.46971 * 240.00080 * 2 1 3 28 28 H 1.09000 * 109.47223 * 119.99986 * 2 1 3 29 29 H 1.09004 * 109.46888 * 59.99868 * 3 2 1 30 30 H 1.09000 * 109.47014 * 300.00114 * 3 2 1 31 31 H 1.08999 * 109.46857 * 59.99556 * 4 3 2 32 32 H 1.09006 * 109.47050 * 300.00403 * 4 3 2 33 33 H 0.97005 * 120.00029 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47063 * 23.50439 * 14 5 4 35 35 H 1.09002 * 109.47129 * 143.50682 * 14 5 4 36 36 H 1.08001 * 119.92396 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.92981 * 180.02562 * 17 16 15 38 38 H 1.07991 * 120.00267 * 179.97438 * 18 17 16 39 39 H 0.96696 * 113.99877 * 90.00506 * 20 19 18 40 40 H 1.08998 * 109.47572 * 59.99724 * 23 22 21 41 41 H 1.09007 * 109.46869 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47582 * 299.99380 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2861 3.4699 1.1857 7 1 4.0029 3.0037 2.1178 8 6 4.8861 4.7216 1.1898 9 7 4.5368 5.6218 0.2955 10 14 6.1894 5.1284 2.4647 11 1 6.3995 3.9545 3.3497 12 1 7.4630 5.4669 1.7800 13 1 5.7415 6.2872 3.2782 14 6 4.3031 3.5135 -1.2690 15 6 5.7643 3.4108 -1.6229 16 6 6.6198 4.4596 -1.3398 17 6 7.9604 4.3689 -1.6635 18 6 8.4523 3.2285 -2.2717 19 6 7.6006 2.1741 -2.5581 20 8 8.0827 1.0520 -3.1566 21 6 6.2516 2.2634 -2.2270 22 8 5.4127 1.2285 -2.5007 23 6 4.7698 1.2348 -3.7769 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 4.9563 6.4964 0.2981 34 1 3.7055 3.0515 -2.0548 35 1 4.0259 4.5632 -1.1713 36 1 6.2394 5.3521 -0.8653 37 1 8.6254 5.1900 -1.4404 38 1 9.5000 3.1602 -2.5240 39 1 8.3898 0.3766 -2.5366 40 1 5.5238 1.2166 -4.5637 41 1 4.1308 0.3562 -3.8660 42 1 4.1646 2.1360 -3.8744 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233257708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:09 Heat of formation + Delta-G solvation = -48.662703 kcal Electronic energy + Delta-G solvation = -23155.009522 eV Core-core repulsion = 19907.969528 eV Total energy + Delta-G solvation = -3247.039993 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21222 -38.49685 -38.15912 -37.17869 -35.54603 -33.24292 -31.97971 -30.31037 -29.36081 -27.96640 -27.06145 -25.39013 -23.28861 -22.96404 -22.06132 -21.46803 -19.26878 -18.59525 -18.31893 -17.33843 -16.70112 -16.59540 -16.25704 -16.02143 -15.54560 -15.20934 -15.07570 -14.95626 -14.80056 -14.20273 -13.72906 -13.37999 -13.35895 -13.07671 -12.98617 -12.88849 -12.60604 -12.46338 -12.31571 -12.17427 -11.96036 -11.89483 -11.77406 -11.61490 -11.55856 -11.26197 -10.59069 -10.37785 -9.41289 -9.35512 -8.79217 -7.85884 -5.04701 0.30186 0.46896 1.42227 1.51549 1.57551 2.52046 2.60521 3.00340 3.13968 3.39210 3.81935 4.08840 4.17892 4.23744 4.31747 4.43843 4.46913 4.51512 4.58184 4.61127 4.63821 4.71210 4.84630 4.88635 4.97250 5.03667 5.08853 5.13609 5.16198 5.22465 5.42189 5.44374 5.52309 5.56858 5.63715 5.70768 5.79463 5.87963 6.00670 6.42289 6.54716 6.93464 7.17577 7.94801 8.36899 9.08351 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.009096 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.122718 B = 3077.497451 C = 4948.961239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.125 4.125 4 C 0.146 3.854 5 N -0.592 5.592 6 C -0.265 4.265 7 H 0.067 0.933 8 C -0.014 4.014 9 N -0.881 5.881 10 Si 0.898 3.102 11 H -0.286 1.286 12 H -0.281 1.281 13 H -0.299 1.299 14 C 0.173 3.827 15 C -0.087 4.087 16 C -0.119 4.119 17 C -0.127 4.127 18 C -0.146 4.146 19 C 0.070 3.930 20 O -0.497 6.497 21 C 0.058 3.942 22 O -0.336 6.336 23 C 0.037 3.963 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.255 0.745 34 H 0.030 0.970 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.402 0.598 40 H 0.046 0.954 41 H 0.113 0.887 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -8.587 -7.049 11.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.165 4.165 4 C 0.021 3.979 5 N -0.310 5.310 6 C -0.393 4.393 7 H 0.085 0.915 8 C -0.211 4.211 9 N -0.528 5.528 10 Si 0.728 3.272 11 H -0.212 1.212 12 H -0.208 1.208 13 H -0.227 1.227 14 C 0.047 3.953 15 C -0.090 4.090 16 C -0.138 4.138 17 C -0.145 4.145 18 C -0.164 4.164 19 C 0.025 3.975 20 O -0.309 6.309 21 C 0.014 3.986 22 O -0.253 6.253 23 C -0.057 4.057 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.146 0.854 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.131 0.869 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.585 -8.322 -7.454 11.284 hybrid contribution 0.831 0.499 1.234 1.569 sum 2.416 -7.823 -6.220 10.282 Atomic orbital electron populations 1.21734 0.95162 1.01990 1.01443 1.21436 0.96369 0.95585 1.01941 1.22062 0.97753 0.96747 0.99981 1.21035 0.92350 0.84780 0.99757 1.44202 1.75155 1.10056 1.01614 1.19260 1.33675 1.00378 0.85994 0.91534 1.24726 1.02163 0.95419 0.98827 1.70114 1.40146 1.03436 1.39060 0.86267 0.83657 0.76829 0.80481 1.21157 1.20752 1.22705 1.20228 0.88380 1.01212 0.85510 1.21188 1.00508 0.91806 0.95510 1.21735 0.93497 1.00166 0.98406 1.21321 0.95384 0.98609 0.99194 1.21415 1.00548 0.93576 1.00898 1.18811 0.90882 0.89384 0.98387 1.84702 1.82933 1.26991 1.36293 1.19118 0.89346 0.89023 1.01124 1.85958 1.60081 1.43039 1.36235 1.23057 0.96576 1.02852 0.83250 0.92961 0.91324 0.93503 0.91465 0.92277 0.94680 0.93905 0.91609 0.95011 0.93435 0.95168 0.87952 0.85374 0.84464 0.83088 0.74019 0.93509 0.86869 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.12 -3.21 5.93 30.59 0.18 -3.03 16 3 C -0.13 -4.58 5.54 30.59 0.17 -4.41 16 4 C 0.15 6.08 5.64 86.38 0.49 6.57 16 5 N -0.59 -28.94 2.53 -706.36 -1.79 -30.73 16 6 C -0.26 -14.30 9.55 84.03 0.80 -13.50 16 7 H 0.07 3.67 8.06 -2.91 -0.02 3.64 16 8 C -0.01 -0.75 3.66 84.86 0.31 -0.44 16 9 N -0.88 -47.24 8.50 21.65 0.18 -47.06 16 10 Si 0.90 43.33 29.69 68.60 2.04 45.37 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 14 C 0.17 8.18 5.01 85.63 0.43 8.60 16 15 C -0.09 -3.84 5.31 -19.79 -0.11 -3.95 16 16 C -0.12 -5.21 8.66 22.27 0.19 -5.01 16 17 C -0.13 -4.62 10.04 22.27 0.22 -4.40 16 18 C -0.15 -4.76 9.98 22.35 0.22 -4.54 16 19 C 0.07 2.45 6.72 22.57 0.15 2.60 16 20 O -0.50 -14.49 13.29 -79.73 -1.06 -15.55 16 21 C 0.06 2.31 5.71 22.57 0.13 2.44 16 22 O -0.34 -12.21 7.42 -79.68 -0.59 -12.81 16 23 C 0.04 1.05 10.83 113.37 1.23 2.28 16 24 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.07 2.62 5.86 -2.39 -0.01 2.61 16 32 H 0.03 1.35 8.04 -2.38 -0.02 1.33 16 33 H 0.25 13.14 8.04 -92.70 -0.75 12.39 16 34 H 0.03 1.34 6.39 -2.39 -0.02 1.33 16 35 H 0.10 5.47 5.04 -2.39 -0.01 5.46 16 36 H 0.13 6.13 5.09 -2.91 -0.01 6.12 16 37 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.15 3.90 8.06 -2.92 -0.02 3.87 16 39 H 0.40 8.33 9.06 -74.06 -0.67 7.66 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.04 1.09 7.13 -2.39 -0.02 1.07 16 Total: -1.00 -60.81 337.36 4.29 -56.53 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.37 Total: 23.79 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 5.14 Total: -19.55 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.60 Total: -77.79 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -1.65 Total: -28.36 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.04 Total: 45.37 kcal Total: -60.81 4.29 -56.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233257708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.864 kcal (2) G-P(sol) polarization free energy of solvation -60.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds