Wall clock time and date at job start Tue Mar 31 2020 01:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46987 * 2 1 4 4 H 1.09001 * 109.46916 * 54.79804 * 3 2 1 5 5 N 1.46892 * 109.47266 * 294.79447 * 3 2 1 6 6 C 1.46897 * 111.00040 * 154.69587 * 5 3 2 7 7 C 1.53002 * 109.47136 * 178.02303 * 6 5 3 8 8 H 1.09004 * 109.46943 * 60.00276 * 7 6 5 9 9 O 1.42897 * 109.47247 * 299.99808 * 7 6 5 10 10 C 1.50705 * 109.46987 * 179.97438 * 7 6 5 11 11 H 1.08001 * 120.00200 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99661 * 180.02562 * 10 7 6 13 13 N 1.31510 * 120.00270 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99546 * 180.02562 * 12 10 7 15 15 H 1.48493 * 109.47307 * 59.99910 * 14 12 10 16 16 H 1.48507 * 109.46874 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47110 * 299.99951 * 14 12 10 18 18 C 1.50703 * 109.46935 * 174.79414 * 3 2 1 19 19 C 1.38260 * 119.94570 * 79.73017 * 18 3 2 20 20 C 1.38145 * 120.05330 * 179.72898 * 19 18 3 21 21 C 1.38725 * 119.94698 * 0.54115 * 20 19 18 22 22 O 1.35896 * 120.05778 * 179.75029 * 21 20 19 23 23 C 1.42905 * 117.00196 * 359.97438 * 22 21 20 24 24 C 1.38735 * 119.88687 * 359.72989 * 21 20 19 25 25 C 1.38138 * 119.94533 * 0.02562 * 24 21 20 26 26 H 1.08997 * 109.47626 * 295.93357 * 1 2 3 27 27 H 1.09010 * 109.47154 * 55.93137 * 1 2 3 28 28 H 1.08998 * 109.47294 * 175.92987 * 1 2 3 29 29 H 1.08997 * 109.47252 * 240.00608 * 2 1 3 30 30 H 1.09001 * 109.47204 * 120.00056 * 2 1 3 31 31 H 1.00902 * 110.99836 * 278.64706 * 5 3 2 32 32 H 1.09004 * 109.46979 * 58.02601 * 6 5 3 33 33 H 1.09000 * 109.46992 * 298.02316 * 6 5 3 34 34 H 0.96698 * 114.00293 * 299.99811 * 9 7 6 35 35 H 0.96995 * 120.00244 * 180.02562 * 13 12 10 36 36 H 1.08001 * 119.97497 * 359.97438 * 19 18 3 37 37 H 1.08007 * 120.02615 * 180.27089 * 20 19 18 38 38 H 1.09003 * 109.47282 * 59.99658 * 23 22 21 39 39 H 1.09003 * 109.47535 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.46472 * 300.00008 * 23 22 21 41 41 H 1.07996 * 120.02604 * 179.97438 * 24 21 20 42 42 H 1.07999 * 119.97551 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6025 1.9825 0.8397 5 7 1.6556 2.0978 -1.2572 6 6 1.5692 3.5543 -1.0868 7 6 1.2156 4.2044 -2.4260 8 1 0.2560 3.8217 -2.7735 9 8 2.2276 3.8966 -3.3868 10 6 1.1264 5.6986 -2.2509 11 1 1.3044 6.1404 -1.2816 12 6 0.8174 6.5016 -3.3283 13 7 0.6001 5.9637 -4.5085 14 14 0.7074 8.3538 -3.1115 15 1 2.0149 8.8753 -2.6386 16 1 0.3630 8.9847 -4.4110 17 1 -0.3437 8.6736 -2.1125 18 6 3.5414 1.4445 0.1289 19 6 4.3296 1.1962 -0.9795 20 6 5.7063 1.2030 -0.8651 21 6 6.2977 1.4481 0.3657 22 8 7.6517 1.4502 0.4819 23 6 8.4051 1.1920 -0.7047 24 6 5.5045 1.6913 1.4776 25 6 4.1284 1.6885 1.3569 26 1 -0.3634 0.4494 0.9241 27 1 -0.3634 0.5757 -0.8514 28 1 -0.3634 -1.0250 -0.0729 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2949 1.8580 -2.0001 32 1 2.5288 3.9370 -0.7392 33 1 0.7973 3.7892 -0.3539 34 1 3.1098 4.2081 -3.1425 35 1 0.3831 6.5286 -5.2665 36 1 3.8688 1.0008 -1.9365 37 1 6.3217 1.0133 -1.7322 38 1 8.1742 1.9495 -1.4538 39 1 9.4698 1.2233 -0.4731 40 1 8.1460 0.2068 -1.0923 41 1 5.9625 1.8820 2.4369 42 1 3.5105 1.8782 2.2221 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332701921.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:43 Heat of formation + Delta-G solvation = -73.310677 kcal Electronic energy + Delta-G solvation = -21966.798146 eV Core-core repulsion = 18718.689336 eV Total energy + Delta-G solvation = -3248.108810 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24786 -38.41053 -36.39376 -35.07452 -32.15292 -31.87855 -31.05401 -30.19727 -28.06033 -27.21669 -25.25161 -23.74135 -22.66195 -21.76776 -20.45107 -20.04834 -18.25111 -16.96878 -16.35321 -15.86458 -15.82245 -14.89749 -14.72445 -14.56512 -14.45974 -13.98234 -13.72217 -13.57643 -13.38827 -12.81860 -12.76310 -12.61810 -12.18482 -12.09574 -11.93975 -11.48937 -11.14261 -11.01271 -10.92428 -10.84279 -10.82588 -10.69483 -10.56068 -10.44086 -10.06319 -9.00624 -8.96173 -8.55126 -8.17553 -8.07000 -7.75220 -5.98292 -4.16263 1.37130 1.44742 3.19274 3.30260 3.35388 3.37382 3.78078 4.38690 4.74168 4.76867 4.84583 4.90591 4.98960 5.01786 5.28776 5.28992 5.34610 5.39952 5.46908 5.47805 5.60511 5.77721 5.84702 6.05335 6.09518 6.17665 6.20922 6.27422 6.36153 6.39557 6.42448 6.46785 6.66450 6.69793 6.76965 6.93374 7.34296 7.58628 7.78735 7.89522 8.03054 8.26217 8.86980 9.39168 9.60406 11.05975 Molecular weight = 279.16amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.004705 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.938258 B = 5949.095224 C = 7123.911149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C 0.125 3.875 4 H 0.079 0.921 5 N -0.674 5.674 6 C 0.036 3.964 7 C 0.232 3.768 8 H 0.063 0.937 9 O -0.565 6.565 10 C -0.572 4.572 11 H 0.054 0.946 12 C 0.080 3.920 13 N -0.859 5.859 14 Si 0.888 3.112 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.138 4.138 19 C -0.072 4.072 20 C -0.201 4.201 21 C 0.117 3.883 22 O -0.321 6.321 23 C 0.028 3.972 24 C -0.151 4.151 25 C -0.076 4.076 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.343 0.657 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.340 0.660 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.127 0.873 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.198 -12.024 9.538 18.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C 0.014 3.986 4 H 0.097 0.903 5 N -0.306 5.306 6 C -0.093 4.093 7 C 0.174 3.826 8 H 0.081 0.919 9 O -0.367 6.367 10 C -0.611 4.611 11 H 0.072 0.928 12 C -0.126 4.126 13 N -0.495 5.495 14 Si 0.716 3.284 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.140 4.140 19 C -0.091 4.091 20 C -0.220 4.220 21 C 0.072 3.928 22 O -0.235 6.235 23 C -0.067 4.067 24 C -0.170 4.170 25 C -0.095 4.095 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.183 0.817 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.047 -12.334 9.263 17.882 hybrid contribution 1.432 1.642 0.219 2.190 sum 10.479 -10.691 9.482 17.721 Atomic orbital electron populations 1.21677 0.95233 1.00689 1.02616 1.21462 0.96526 0.94960 1.01123 1.20635 0.87536 0.95814 0.94578 0.90252 1.60734 1.54879 1.09964 1.05045 1.22850 0.98848 0.85577 1.01992 1.19415 0.88540 0.92358 0.82254 0.91909 1.86574 1.18617 1.81320 1.50222 1.21600 1.51339 0.92493 0.95646 0.92822 1.25017 0.93925 0.98448 0.95186 1.70066 1.44483 1.35113 0.99788 0.86751 0.78594 0.85736 0.77359 1.20243 1.21196 1.20137 1.20780 0.97870 1.01807 0.93501 1.20797 0.92620 0.97001 0.98653 1.21190 0.96050 1.08177 0.96584 1.19010 0.82327 0.97273 0.94206 1.86037 1.15403 1.86656 1.35424 1.23033 0.95889 1.00730 0.87094 1.20371 0.92932 1.06303 0.97400 1.20861 0.93467 0.97884 0.97277 0.93576 0.90759 0.93798 0.92153 0.92598 0.83608 0.96405 0.91829 0.81684 0.92981 0.85451 0.85581 0.92510 0.88456 0.92745 0.85550 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.85 37.16 0.37 -1.48 16 2 C -0.10 -1.30 5.58 -26.73 -0.15 -1.45 16 3 C 0.13 1.80 2.22 -68.86 -0.15 1.65 16 4 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 5 N -0.67 -11.74 5.64 -107.95 -0.61 -12.35 16 6 C 0.04 0.75 5.12 -3.82 -0.02 0.73 16 7 C 0.23 5.86 3.09 -27.88 -0.09 5.77 16 8 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 9 O -0.57 -14.28 12.04 -35.23 -0.42 -14.70 16 10 C -0.57 -15.80 8.76 -34.44 -0.30 -16.11 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 12 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 13 N -0.86 -25.52 12.84 55.43 0.71 -24.81 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C -0.14 -1.92 4.70 -104.60 -0.49 -2.41 16 19 C -0.07 -1.00 9.10 -39.61 -0.36 -1.36 16 20 C -0.20 -2.60 9.04 -39.44 -0.36 -2.96 16 21 C 0.12 1.55 6.69 -39.22 -0.26 1.29 16 22 O -0.32 -3.96 10.50 -19.41 -0.20 -4.16 16 23 C 0.03 0.23 9.81 101.05 0.99 1.23 16 24 C -0.15 -1.95 9.99 -39.43 -0.39 -2.35 16 25 C -0.08 -0.99 9.66 -39.60 -0.38 -1.37 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.10 7.65 -51.92 -0.40 0.71 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.34 6.07 5.69 -39.29 -0.22 5.84 16 32 H 0.02 0.37 7.98 -51.93 -0.41 -0.04 16 33 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.34 7.78 9.04 45.56 0.41 8.19 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.13 1.73 6.52 -52.49 -0.34 1.38 16 37 H 0.13 1.37 6.30 -52.48 -0.33 1.04 16 38 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 41 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 42 H 0.13 1.39 8.03 -52.49 -0.42 0.97 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -30.81 346.17 -7.86 -38.67 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.83 Total: 12.48 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.70 Total: -16.65 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.10 Total: -37.16 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.63 Total: -18.86 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.81 -7.86 -38.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332701921.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.643 kcal (2) G-P(sol) polarization free energy of solvation -30.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds