Wall clock time and date at job start Tue Mar 31 2020 01:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39836 * 126.45421 * 2 1 4 4 C 1.35456 * 107.86308 * 179.71877 * 3 2 1 5 5 N 1.35536 * 108.87160 * 0.43207 * 4 3 2 6 6 C 1.46498 * 125.67731 * 179.82578 * 5 4 3 7 7 C 1.37655 * 108.63977 * 359.56429 * 5 4 3 8 8 C 1.46679 * 126.22821 * 180.23956 * 7 5 4 9 9 O 1.21698 * 119.99848 * 99.34549 * 8 7 5 10 10 N 1.34771 * 120.00422 * 279.34685 * 8 7 5 11 11 C 1.46501 * 120.00327 * 185.15675 * 10 8 7 12 12 C 1.52998 * 109.47292 * 179.97438 * 11 10 8 13 13 H 1.08999 * 109.47876 * 305.00312 * 12 11 10 14 14 C 1.53003 * 109.47040 * 65.00225 * 12 11 10 15 15 C 1.53003 * 109.47493 * 184.99668 * 12 11 10 16 16 N 1.46497 * 109.47198 * 175.00057 * 15 12 11 17 17 C 1.36938 * 119.99607 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.38811 * 119.99778 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00036 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00128 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47253 * 90.00431 * 21 19 17 23 23 H 1.48502 * 109.47270 * 210.00388 * 21 19 17 24 24 H 1.48502 * 109.47029 * 330.00326 * 21 19 17 25 25 H 1.08998 * 109.46653 * 270.01973 * 1 2 3 26 26 H 1.08997 * 109.47169 * 30.01842 * 1 2 3 27 27 H 1.09003 * 109.47050 * 150.02545 * 1 2 3 28 28 H 1.07997 * 126.07180 * 359.97438 * 3 2 1 29 29 H 1.07998 * 125.56630 * 180.25991 * 4 3 2 30 30 H 1.08997 * 109.47381 * 264.60434 * 6 5 4 31 31 H 1.08999 * 109.46671 * 144.60951 * 6 5 4 32 32 H 1.09001 * 109.47035 * 24.61336 * 6 5 4 33 33 H 0.97008 * 119.99971 * 5.15402 * 10 8 7 34 34 H 1.08996 * 109.47370 * 300.00057 * 11 10 8 35 35 H 1.08998 * 109.46971 * 60.00066 * 11 10 8 36 36 H 1.09002 * 109.47439 * 59.99458 * 14 12 11 37 37 H 1.08995 * 109.47771 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.47045 * 299.99909 * 14 12 11 39 39 H 1.08995 * 109.47025 * 295.01144 * 15 12 11 40 40 H 1.09007 * 109.46519 * 55.00111 * 15 12 11 41 41 H 0.96991 * 120.00385 * 0.02562 * 16 15 12 42 42 H 0.97003 * 120.00023 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0063 5 7 3.6285 -0.6624 0.0006 6 6 4.8227 -1.5110 0.0010 7 6 2.3263 -1.1088 0.0004 8 6 1.8900 -2.5092 0.0000 9 8 1.5455 -3.0395 1.0398 10 7 1.8706 -3.2087 -1.1518 11 6 1.3291 -4.5698 -1.1732 12 6 1.4239 -5.1342 -2.5921 13 1 0.9259 -4.4574 -3.2864 14 6 2.8952 -5.2778 -2.9866 15 6 0.7465 -6.5052 -2.6421 16 7 0.7316 -6.9925 -4.0235 17 6 0.1715 -8.2077 -4.3149 18 1 -0.2596 -8.8066 -3.5263 19 6 0.1578 -8.6696 -5.6238 20 7 -0.3809 -9.8374 -5.9039 21 14 0.9027 -7.6334 -6.9878 22 1 2.3386 -7.9784 -7.1436 23 1 0.1878 -7.9033 -8.2611 24 1 0.7738 -6.1947 -6.6431 25 1 -0.3632 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 2.0136 2.1549 -0.0004 29 1 4.4972 1.3253 0.0119 30 1 5.0663 -1.7959 -1.0225 31 1 4.6316 -2.4068 0.5918 32 1 5.6586 -0.9616 0.4341 33 1 2.2152 -2.8110 -1.9667 34 1 1.9018 -5.1995 -0.4923 35 1 0.2855 -4.5506 -0.8592 36 1 3.3932 -5.9545 -2.2923 37 1 2.9628 -5.6802 -3.9973 38 1 3.3778 -4.3011 -2.9511 39 1 1.2980 -7.2060 -2.0154 40 1 -0.2767 -6.4184 -2.2763 41 1 1.1183 -6.4544 -4.7318 42 1 -0.3902 -10.1604 -6.8185 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753611044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:11 Heat of formation + Delta-G solvation = 16.122104 kcal Electronic energy + Delta-G solvation = -21483.815513 eV Core-core repulsion = 18271.877551 eV Total energy + Delta-G solvation = -3211.937962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.61047 -39.33511 -36.97615 -34.52762 -33.96989 -32.57289 -30.79682 -30.29593 -28.57800 -26.71524 -25.77912 -25.21437 -22.67107 -21.64484 -20.54147 -20.35928 -19.34172 -17.85876 -17.37500 -16.42753 -15.97666 -15.55215 -15.30508 -14.58357 -14.53251 -14.15178 -13.78030 -13.59010 -13.48391 -13.39069 -13.16523 -13.03398 -12.63160 -12.51780 -12.27537 -12.23698 -12.19302 -11.72539 -11.48989 -11.08942 -10.82090 -10.67836 -10.66744 -10.22113 -10.08662 -9.60450 -9.19146 -8.92531 -8.79257 -8.30941 -7.25849 -5.78730 -3.14584 1.66013 2.09922 2.62361 2.75018 3.21352 3.34050 3.35980 3.42546 4.37447 4.53957 4.56438 4.74916 4.76232 4.84277 5.00825 5.03276 5.07015 5.11477 5.18356 5.49802 5.51378 5.60710 5.61458 5.68525 5.79929 5.81033 5.84948 5.87453 6.01917 6.13021 6.17508 6.30549 6.39047 6.62197 6.63742 6.71116 6.79474 6.97330 7.31397 7.97451 8.00329 8.40182 9.18898 9.90946 10.10493 11.39759 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.003203 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.619405 B = 8738.356708 C = 8866.758642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.111 4.111 3 C -0.201 4.201 4 C 0.004 3.996 5 N -0.426 5.426 6 C 0.067 3.933 7 C -0.045 4.045 8 C 0.590 3.410 9 O -0.526 6.526 10 N -0.715 5.715 11 C 0.125 3.875 12 C -0.115 4.115 13 H 0.077 0.923 14 C -0.143 4.143 15 C 0.165 3.835 16 N -0.754 5.754 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.884 3.116 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.278 1.278 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.141 0.859 29 H 0.166 0.834 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.361 0.639 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 23.153 11.008 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.226 4.226 4 C -0.129 4.129 5 N -0.101 5.101 6 C -0.074 4.074 7 C -0.158 4.158 8 C 0.374 3.626 9 O -0.401 6.401 10 N -0.366 5.366 11 C 0.002 3.998 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.200 4.200 15 C 0.037 3.963 16 N -0.400 5.400 17 C -0.374 4.374 18 H 0.109 0.891 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.159 0.841 29 H 0.184 0.816 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.194 0.806 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.407 22.253 11.789 27.249 hybrid contribution 0.805 0.860 -1.523 1.925 sum 11.211 23.113 10.266 27.664 Atomic orbital electron populations 1.20211 0.89685 1.02224 1.02106 1.19777 0.95380 0.90896 1.05783 1.20681 0.91705 0.98483 1.11705 1.21875 0.99420 0.82416 1.09161 1.43836 1.05010 1.06320 1.54946 1.22149 0.85913 0.95589 1.03774 1.20100 0.83998 0.93543 1.18197 1.17108 0.78179 0.83581 0.83775 1.90856 1.47914 1.69646 1.31716 1.46134 1.63070 1.16326 1.11102 1.21470 0.99565 0.81159 0.97642 1.21612 0.97527 0.99209 0.95059 0.90474 1.21809 0.95051 1.00471 1.02691 1.20547 0.97316 0.90569 0.87823 1.42681 1.72622 1.21531 1.03185 1.19068 1.30589 0.93351 0.94410 0.89146 1.24675 1.00820 0.96755 0.96927 1.69702 1.50049 1.19320 1.19126 0.86550 0.79140 0.80056 0.82786 1.21081 1.21668 1.20402 0.91436 0.91435 0.92157 0.84131 0.81623 0.90326 0.89811 0.89146 0.76378 0.90906 0.90867 0.92317 0.91775 0.93822 0.95082 0.95190 0.80641 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.20 36.01 0.37 -0.50 16 2 C -0.11 -1.26 6.21 -104.16 -0.65 -1.91 16 3 C -0.20 -1.91 10.76 -39.98 -0.43 -2.34 16 4 C 0.00 0.03 11.37 -16.91 -0.19 -0.16 16 5 N -0.43 -4.02 3.16 -120.24 -0.38 -4.40 16 6 C 0.07 0.43 10.89 59.85 0.65 1.08 16 7 C -0.05 -0.54 6.63 -81.98 -0.54 -1.09 16 8 C 0.59 7.92 6.75 -12.86 -0.09 7.84 16 9 O -0.53 -9.03 17.12 5.19 0.09 -8.94 16 10 N -0.71 -8.24 5.28 -61.62 -0.33 -8.56 16 11 C 0.13 1.61 5.07 -4.04 -0.02 1.59 16 12 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 13 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 14 C -0.14 -1.86 8.94 37.16 0.33 -1.52 16 15 C 0.17 3.07 5.65 -4.04 -0.02 3.05 16 16 N -0.75 -17.55 5.13 -59.91 -0.31 -17.86 16 17 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -29.36 13.97 55.49 0.78 -28.59 16 21 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.65 7.96 -51.93 -0.41 0.24 16 28 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.62 7.95 -51.93 -0.41 0.21 16 32 H 0.09 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.40 3.91 7.64 -40.82 -0.31 3.60 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.95 7.18 -51.93 -0.37 0.58 16 38 H 0.04 0.45 7.18 -51.93 -0.37 0.08 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.36 8.11 4.71 -40.82 -0.19 7.92 16 42 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 350.52 15.07 5.28 5.28 Total: -1.00 -34.74 350.52 -7.39 -42.13 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.74 Total: 6.63 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.07 Total: -2.84 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.24 Total: -59.41 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.74 -7.39 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753611044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.251 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds