Wall clock time and date at job start Tue Mar 31 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39828 * 126.46333 * 2 1 4 4 C 1.35444 * 107.86541 * 179.97438 * 3 2 1 5 5 N 1.35530 * 108.87486 * 359.73471 * 4 3 2 6 6 C 1.46499 * 125.67757 * 180.30488 * 5 4 3 7 7 C 1.37651 * 108.64202 * 0.43508 * 5 4 3 8 8 C 1.46676 * 126.23349 * 179.83279 * 7 5 4 9 9 O 1.21694 * 120.00181 * 99.11038 * 8 7 5 10 10 N 1.34775 * 119.99853 * 279.11084 * 8 7 5 11 11 C 1.46502 * 119.99739 * 174.84929 * 10 8 7 12 12 C 1.53004 * 109.46813 * 179.97438 * 11 10 8 13 13 H 1.09000 * 109.46713 * 55.00337 * 12 11 10 14 14 C 1.52995 * 109.47471 * 294.99884 * 12 11 10 15 15 C 1.53002 * 109.47104 * 174.99896 * 12 11 10 16 16 N 1.46492 * 109.47241 * 185.00118 * 15 12 11 17 17 C 1.36945 * 120.00081 * 179.72529 * 16 15 12 18 18 H 1.07996 * 119.99732 * 0.27956 * 17 16 15 19 19 C 1.38812 * 120.00184 * 180.27672 * 17 16 15 20 20 N 1.31618 * 119.99527 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99982 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47095 * 60.00107 * 21 19 17 23 23 H 1.48505 * 109.47137 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47126 * 299.99976 * 21 19 17 25 25 H 1.08998 * 109.47077 * 270.04149 * 1 2 3 26 26 H 1.09007 * 109.46786 * 30.04069 * 1 2 3 27 27 H 1.08999 * 109.47327 * 150.04050 * 1 2 3 28 28 H 1.08007 * 126.06336 * 359.93340 * 3 2 1 29 29 H 1.08009 * 125.56408 * 179.97438 * 4 3 2 30 30 H 1.09005 * 109.46928 * 275.04952 * 6 5 4 31 31 H 1.08994 * 109.47353 * 35.05781 * 6 5 4 32 32 H 1.09004 * 109.46734 * 155.06008 * 6 5 4 33 33 H 0.96998 * 120.00239 * 354.84962 * 10 8 7 34 34 H 1.09004 * 109.47344 * 60.00393 * 11 10 8 35 35 H 1.08993 * 109.47363 * 299.99477 * 11 10 8 36 36 H 1.09004 * 109.46699 * 60.00223 * 14 12 11 37 37 H 1.08994 * 109.47385 * 179.97438 * 14 12 11 38 38 H 1.09001 * 109.47497 * 300.00511 * 14 12 11 39 39 H 1.09004 * 109.46854 * 64.99968 * 15 12 11 40 40 H 1.08995 * 109.47154 * 305.00567 * 15 12 11 41 41 H 0.96996 * 120.00309 * 0.02562 * 16 15 12 42 42 H 0.97004 * 119.99640 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6926 0.0006 5 7 3.6283 -0.6627 0.0069 6 6 4.8224 -1.5113 0.0158 7 6 2.3262 -1.1090 0.0005 8 6 1.8897 -2.5093 0.0007 9 8 1.5435 -3.0387 1.0404 10 7 1.8720 -3.2098 -1.1506 11 6 1.5450 -4.6378 -1.1342 12 6 1.5945 -5.1886 -2.5608 13 1 2.5676 -4.9706 -3.0008 14 6 0.4966 -4.5316 -3.3997 15 6 1.3761 -6.7027 -2.5307 16 7 1.5418 -7.2469 -3.8807 17 6 1.3979 -8.5910 -4.0995 18 1 1.1577 -9.2492 -3.2777 19 6 1.5606 -9.1075 -5.3777 20 7 1.8537 -8.3053 -6.3791 21 14 1.3649 -10.9411 -5.6760 22 1 -0.0063 -11.3617 -5.2910 23 1 1.5878 -11.2351 -7.1145 24 1 2.3581 -11.6842 -4.8597 25 1 -0.3633 0.0007 1.0276 26 1 -0.3633 0.8897 -0.5145 27 1 -0.3634 -0.8903 -0.5132 28 1 2.0137 2.1548 -0.0010 29 1 4.4974 1.3250 0.0003 30 1 5.1753 -1.6528 -1.0058 31 1 5.6034 -1.0334 0.6072 32 1 4.5769 -2.4793 0.4526 33 1 2.0757 -2.7685 -1.9900 34 1 0.5438 -4.7766 -0.7261 35 1 2.2671 -5.1688 -0.5141 36 1 0.6523 -3.4530 -3.4211 37 1 0.5322 -4.9237 -4.4160 38 1 -0.4765 -4.7496 -2.9596 39 1 0.3690 -6.9174 -2.1734 40 1 2.1043 -7.1616 -1.8620 41 1 1.7578 -6.6558 -4.6188 42 1 1.9670 -8.6662 -7.2724 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753611045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:13 Heat of formation + Delta-G solvation = 11.661730 kcal Electronic energy + Delta-G solvation = -21400.206976 eV Core-core repulsion = 18188.075598 eV Total energy + Delta-G solvation = -3212.131378 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 279.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55622 -39.26324 -36.81046 -34.38601 -33.91455 -32.53337 -30.59148 -29.96877 -28.49287 -26.51675 -25.59432 -25.10025 -22.87873 -21.76208 -20.47006 -20.22496 -19.16897 -17.72889 -17.00380 -16.39076 -15.79673 -15.37918 -15.37317 -14.64324 -14.39004 -14.03062 -13.70158 -13.49184 -13.42714 -13.33702 -12.99612 -12.97880 -12.62603 -12.32897 -12.20455 -12.16891 -12.05642 -11.68180 -11.08242 -10.92257 -10.73594 -10.60451 -10.46737 -10.21380 -10.00071 -9.68882 -9.11130 -8.88811 -8.74234 -8.25739 -6.94183 -5.78516 -3.07058 1.71037 2.14876 2.67302 2.84322 3.27153 3.43531 3.47841 3.48906 4.45239 4.57683 4.61620 4.81710 4.83509 5.01107 5.08078 5.12735 5.16395 5.17943 5.35781 5.53688 5.56159 5.63471 5.78779 5.86602 5.89802 5.92444 5.94573 6.07640 6.17768 6.22263 6.36431 6.41948 6.63411 6.68799 6.74704 6.83874 6.85327 7.02922 7.39653 7.68607 8.06798 8.40683 9.51854 10.08952 10.43719 11.44434 Molecular weight = 279.17amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.002927 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.186951 B = 9564.938052 C = 9711.528718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.113 4.113 3 C -0.201 4.201 4 C 0.004 3.996 5 N -0.424 5.424 6 C 0.067 3.933 7 C -0.044 4.044 8 C 0.589 3.411 9 O -0.528 6.528 10 N -0.714 5.714 11 C 0.125 3.875 12 C -0.110 4.110 13 H 0.076 0.924 14 C -0.142 4.142 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.240 4.240 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.141 0.859 29 H 0.166 0.834 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.403 0.597 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.023 0.977 40 H 0.020 0.980 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 19.939 11.534 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C -0.226 4.226 4 C -0.129 4.129 5 N -0.099 5.099 6 C -0.074 4.074 7 C -0.157 4.157 8 C 0.373 3.627 9 O -0.403 6.403 10 N -0.366 5.366 11 C 0.001 3.999 12 C -0.129 4.129 13 H 0.094 0.906 14 C -0.199 4.199 15 C 0.033 3.967 16 N -0.375 5.375 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.158 0.842 29 H 0.184 0.816 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.746 19.078 12.311 23.012 hybrid contribution 0.265 -0.586 -0.898 1.105 sum 4.011 18.492 11.413 22.097 Atomic orbital electron populations 1.20202 0.89736 1.02172 1.02043 1.19777 0.95349 0.90957 1.06017 1.20668 0.91707 0.98455 1.11733 1.21858 0.99413 0.82431 1.09207 1.43820 1.05009 1.06320 1.54781 1.22151 0.85909 0.95518 1.03817 1.20094 0.84026 0.93588 1.18041 1.17111 0.78072 0.83635 0.83859 1.90847 1.47450 1.69958 1.32077 1.46147 1.70159 1.10972 1.09281 1.21496 1.01586 0.78918 0.97879 1.21550 1.00252 0.97637 0.93441 0.90603 1.21794 0.98168 0.98594 1.01384 1.20570 0.97998 0.88847 0.89319 1.42327 1.85454 1.06010 1.03735 1.19196 1.40171 0.84228 0.93527 0.91197 1.24734 1.02621 0.97864 0.95753 1.69647 1.55134 1.33779 0.99790 0.86252 0.77910 0.85133 0.76801 1.21231 1.21687 1.21276 0.91509 0.91468 0.92184 0.84169 0.81631 0.90167 0.89382 0.89691 0.76216 0.90975 0.91290 0.93867 0.91104 0.92707 0.95923 0.96182 0.78206 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.20 36.01 0.37 -0.50 16 2 C -0.11 -1.33 6.21 -104.16 -0.65 -1.98 16 3 C -0.20 -1.98 10.76 -39.98 -0.43 -2.41 16 4 C 0.00 0.03 11.38 -16.92 -0.19 -0.16 16 5 N -0.42 -4.28 3.16 -120.24 -0.38 -4.66 16 6 C 0.07 0.49 10.98 59.85 0.66 1.15 16 7 C -0.04 -0.55 6.63 -81.98 -0.54 -1.10 16 8 C 0.59 8.26 6.57 -12.85 -0.08 8.18 16 9 O -0.53 -9.33 17.12 5.19 0.09 -9.24 16 10 N -0.71 -8.77 5.28 -61.62 -0.33 -9.10 16 11 C 0.12 1.70 5.07 -4.04 -0.02 1.68 16 12 C -0.11 -1.67 2.46 -90.62 -0.22 -1.89 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 14 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 15 C 0.16 3.16 5.65 -4.05 -0.02 3.13 16 16 N -0.73 -18.17 5.33 -59.91 -0.32 -18.49 16 17 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 20 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.65 7.96 -51.93 -0.41 0.24 16 28 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.40 4.31 7.64 -40.82 -0.31 3.99 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.53 7.18 -51.93 -0.37 0.16 16 37 H 0.07 1.22 7.18 -51.93 -0.37 0.85 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -33.60 353.33 -7.73 -41.33 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.77 Total: 7.81 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.05 Total: -3.01 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.30 Total: -59.56 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.60 -7.73 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753611045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.992 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds